/usr/include/libpwiz/pwiz/analysis/passive/SpectrumBinaryData.hpp is in libpwiz-dev 3.0.9393-1+b2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 | //
// $Id: SpectrumBinaryData.hpp 7297 2015-03-12 05:30:33Z paragmallick $
//
//
// Original author: Darren Kessner <darren@proteowizard.org>
//
// Copyright 2008 Spielberg Family Center for Applied Proteomics
// Cedars-Sinai Medical Center, Los Angeles, California 90048
//
// Licensed under the Apache License, Version 2.0 (the "License");
// you may not use this file except in compliance with the License.
// You may obtain a copy of the License at
//
// http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing, software
// distributed under the License is distributed on an "AS IS" BASIS,
// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
// See the License for the specific language governing permissions and
// limitations under the License.
//
#ifndef _SPECTRUMBINARYDATA_HPP_
#define _SPECTRUMBINARYDATA_HPP_
#include "pwiz/utility/misc/Export.hpp"
#include "MSDataAnalyzer.hpp"
#include "MSDataCache.hpp"
namespace pwiz {
namespace analysis {
/// writes table of spectrum metadata to a file
class PWIZ_API_DECL SpectrumBinaryData : public MSDataAnalyzer
{
public:
struct PWIZ_API_DECL Config
{
size_t begin;
size_t end;
bool interpretAsScanNumbers;
size_t precision;
Config(const std::string& args = "");
bool operator == (const Config &rhs) const
{
return begin==rhs.begin &&
end == rhs.end &&
interpretAsScanNumbers == rhs.interpretAsScanNumbers &&
precision == rhs.precision;
}
};
SpectrumBinaryData(const MSDataCache& cache, const Config& config);
/// \name MSDataAnalyzer interface
//@{
virtual UpdateRequest updateRequested(const DataInfo& dataInfo,
const SpectrumIdentity& spectrumIdentity) const;
virtual void update(const DataInfo& dataInfo,
const Spectrum& spectrum);
//@}
private:
const MSDataCache& cache_;
const Config config_;
};
template<>
struct analyzer_strings<SpectrumBinaryData>
{
static const char* id() {return "binary";}
#define BINARY_INDEX_ARG "index"
#define BINARY_SCAN_ARG "sn"
#define BINARY_PRECISION_ARG "precision"
static const char* argsFormat() {return BINARY_INDEX_ARG "=<spectrumIndexLow>[,<spectrumIndexHigh>] | " BINARY_SCAN_ARG "=<scanNumberLow>[,<scanNumberHigh>] [" BINARY_PRECISION_ARG "=<precision>]";}
static const char* description() {return "write binary data for selected spectra";}
static std::vector<std::string> argsUsage()
{
std::vector<std::string> result;
result.push_back(BINARY_INDEX_ARG": write data for spectra in this index range");
result.push_back(BINARY_SCAN_ARG": write data for spectra in this scan number range");
result.push_back(BINARY_PRECISION_ARG": write d decimal places");
return result;
}
};
} // namespace analysis
} // namespace pwiz
#endif // _SPECTRUMBINARYDATA_HPP_
|