/usr/include/libpwiz/pwiz/analysis/passive/SpectrumTable.hpp is in libpwiz-dev 3.0.9393-1+b2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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// $Id: SpectrumTable.hpp 7297 2015-03-12 05:30:33Z paragmallick $
//
//
// Original author: Darren Kessner <darren@proteowizard.org>
//
// Copyright 2008 Spielberg Family Center for Applied Proteomics
// Cedars-Sinai Medical Center, Los Angeles, California 90048
//
// Licensed under the Apache License, Version 2.0 (the "License");
// you may not use this file except in compliance with the License.
// You may obtain a copy of the License at
//
// http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing, software
// distributed under the License is distributed on an "AS IS" BASIS,
// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
// See the License for the specific language governing permissions and
// limitations under the License.
//
#ifndef _SPECTRUMTABLE_HPP_
#define _SPECTRUMTABLE_HPP_
#include "pwiz/utility/misc/Export.hpp"
#include "MSDataAnalyzer.hpp"
#include "MSDataCache.hpp"
#include "TabularConfig.hpp"
namespace pwiz {
namespace analysis {
/// writes table of spectrum metadata to a file
class PWIZ_API_DECL SpectrumTable : public MSDataAnalyzer
{
public:
struct PWIZ_API_DECL Config : TabularConfig
{
Config(const std::string& args = "");
};
SpectrumTable(const MSDataCache& cache, const Config& config);
/// \name MSDataAnalyzer interface
//@{
virtual UpdateRequest updateRequested(const DataInfo& dataInfo,
const SpectrumIdentity& spectrumIdentity) const;
virtual void close(const DataInfo& dataInfo);
//@}
private:
const MSDataCache& cache_;
const Config config_;
};
template<>
struct analyzer_strings<SpectrumTable>
{
static const char* id() {return "spectrum_table";}
static const char* description() {return "write spectrum metadata as read from scan headers, in a table format";}
static const char* argsFormat() {return "[" TABULARCONFIG_DELIMITER_OPTIONS_STR "]";}
static std::vector<std::string> argsUsage()
{
return std::vector<std::string>(1, TABULARCONFIG_DELIMITER_USAGE_STR);
}
};
} // namespace analysis
} // namespace pwiz
#endif // _SPECTRUMTABLE_HPP_
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