/usr/include/libpwiz/pwiz/data/identdata/Diff.hpp is in libpwiz-dev 3.0.9393-1+b2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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// $Id: Diff.hpp 2820 2011-06-27 22:51:16Z chambm $
//
//
// Original author: Robert Burke <robert.burke@proteowizard.org>
//
// Copyright 2009 Spielberg Family Center for Applied Proteomics
// University of Southern California, Los Angeles, California 90033
//
// Licensed under the Apache License, Version 2.0 (the "License");
// you may not use this file except in compliance with the License.
// You may obtain a copy of the License at
//
// http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing, software
// distributed under the License is distributed on an "AS IS" BASIS,
// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
// See the License for the specific language governing permissions and
// limitations under the License.
//
#ifndef _MSIDDATA_DIFF_HPP_
#define _MSIDDATA_DIFF_HPP_
#include "pwiz/utility/misc/Export.hpp"
#include "IdentData.hpp"
namespace pwiz { namespace identdata { struct DiffConfig; } }
namespace pwiz {
namespace data {
namespace diff_impl {
using namespace identdata;
PWIZ_API_DECL
void diff(const FragmentArray& a,
const FragmentArray& b,
FragmentArray& a_b,
FragmentArray& b_a,
const DiffConfig& config);
PWIZ_API_DECL
void diff(const IonType& a,
const IonType& b,
IonType& a_b,
IonType& b_a,
const DiffConfig& config);
PWIZ_API_DECL
void diff(const Measure& a,
const Measure& b,
Measure& a_b,
Measure& b_a,
const DiffConfig& config);
PWIZ_API_DECL
void diff(const PeptideEvidence& a,
const PeptideEvidence& b,
PeptideEvidence& a_b,
PeptideEvidence& b_a,
const DiffConfig& config);
PWIZ_API_DECL
void diff(const ProteinAmbiguityGroup& a,
const ProteinAmbiguityGroup& b,
ProteinAmbiguityGroup& a_b,
ProteinAmbiguityGroup& b_a,
const DiffConfig& config);
PWIZ_API_DECL
void diff(const PeptideHypothesis& a,
const PeptideHypothesis& b,
PeptideHypothesis& a_b,
PeptideHypothesis& b_a,
const DiffConfig& config);
PWIZ_API_DECL
void diff(const ProteinDetectionHypothesis& a,
const ProteinDetectionHypothesis& b,
ProteinDetectionHypothesis& a_b,
ProteinDetectionHypothesis& b_a,
const DiffConfig& config);
PWIZ_API_DECL
void diff(const DataCollection& a,
const DataCollection& b,
DataCollection& a_b,
DataCollection& b_a,
const DiffConfig& config);
PWIZ_API_DECL
void diff(const SpectrumIdentificationListPtr a,
const SpectrumIdentificationListPtr b,
SpectrumIdentificationListPtr a_b,
SpectrumIdentificationListPtr b_a,
const DiffConfig& config);
PWIZ_API_DECL
void diff(const SpectrumIdentificationList& a,
const SpectrumIdentificationList& b,
SpectrumIdentificationList& a_b,
SpectrumIdentificationList& b_a,
const DiffConfig& config);
PWIZ_API_DECL
void diff(const ProteinDetectionList& a,
const ProteinDetectionList& b,
ProteinDetectionList& a_b,
ProteinDetectionList& b_a,
const DiffConfig& config);
PWIZ_API_DECL
void diff(const AnalysisData& a,
const AnalysisData& b,
AnalysisData& a_b,
AnalysisData& b_a,
const DiffConfig& config);
PWIZ_API_DECL
void diff(const SearchDatabase& a,
const SearchDatabase& b,
SearchDatabase& a_b,
SearchDatabase& b_a,
const DiffConfig& config);
PWIZ_API_DECL
void diff(const SpectraData& a,
const SpectraData& b,
SpectraData& a_b,
SpectraData& b_a,
const DiffConfig& config);
PWIZ_API_DECL
void diff(const SourceFile& a,
const SourceFile& b,
SourceFile& a_b,
SourceFile& b_a,
const DiffConfig& config);
PWIZ_API_DECL
void diff(const Inputs& a,
const Inputs& b,
Inputs& a_b,
Inputs& b_a,
const DiffConfig& config);
PWIZ_API_DECL
void diff(const Enzyme& a,
const Enzyme& b,
Enzyme& a_b,
Enzyme& b_a,
const DiffConfig& config);
PWIZ_API_DECL
void diff(const Enzymes& a,
const Enzymes& b,
Enzymes& a_b,
Enzymes& b_a,
const DiffConfig& config);
PWIZ_API_DECL
void diff(const MassTable& a,
const MassTable& b,
MassTable& a_b,
MassTable& b_a,
const DiffConfig& config);
PWIZ_API_DECL
void diff(const Residue& a,
const Residue& b,
Residue& a_b,
Residue& b_a,
const DiffConfig& config);
PWIZ_API_DECL
void diff(const AmbiguousResidue& a,
const AmbiguousResidue& b,
AmbiguousResidue& a_b,
AmbiguousResidue& b_a,
const DiffConfig& config);
PWIZ_API_DECL
void diff(const Filter& a,
const Filter& b,
Filter& a_b,
Filter& b_a,
const DiffConfig& config);
PWIZ_API_DECL
void diff(const DatabaseTranslation& a,
const DatabaseTranslation& b,
DatabaseTranslation& a_b,
DatabaseTranslation& b_a,
const DiffConfig& config);
PWIZ_API_DECL
void diff(const SpectrumIdentificationProtocol& a,
const SpectrumIdentificationProtocol& b,
SpectrumIdentificationProtocol& a_b,
SpectrumIdentificationProtocol& b_a,
const DiffConfig& config);
PWIZ_API_DECL
void diff(const ProteinDetectionProtocol& a,
const ProteinDetectionProtocol& b,
ProteinDetectionProtocol& a_b,
ProteinDetectionProtocol& b_a,
const DiffConfig& config);
PWIZ_API_DECL
void diff(const AnalysisProtocolCollection& a,
const AnalysisProtocolCollection& b,
AnalysisProtocolCollection& a_b,
AnalysisProtocolCollection& b_a,
const DiffConfig& config);
PWIZ_API_DECL
void diff(const Contact& a,
const Contact& b,
Contact& a_b,
Contact& b_a,
const DiffConfig& config);
PWIZ_API_DECL
void diff(const Person& a,
const Person& b,
Person& a_b,
Person& b_a,
const DiffConfig& config);
PWIZ_API_DECL
void diff(const Organization& a,
const Organization& b,
Organization& a_b,
Organization& b_a,
const DiffConfig& config);
PWIZ_API_DECL
void diff(const BibliographicReference& a,
const BibliographicReference& b,
BibliographicReference& a_b,
BibliographicReference& b_a,
const DiffConfig& config);
PWIZ_API_DECL
void diff(const ProteinDetection& a,
const ProteinDetection& b,
ProteinDetection& a_b,
ProteinDetection& b_a,
const DiffConfig& config);
PWIZ_API_DECL
void diff(const SpectrumIdentification& a,
const SpectrumIdentification& b,
SpectrumIdentification& a_b,
SpectrumIdentification& b_a,
const DiffConfig& config);
PWIZ_API_DECL
void diff(const AnalysisCollection& a,
const AnalysisCollection& b,
AnalysisCollection& a_b,
AnalysisCollection& b_a,
const DiffConfig& config);
PWIZ_API_DECL
void diff(const DBSequence& a,
const DBSequence& b,
DBSequence& a_b,
DBSequence& b_a,
const DiffConfig& config);
PWIZ_API_DECL
void diff(const Modification& a,
const Modification& b,
Modification& a_b,
Modification& b_a,
const DiffConfig& config);
PWIZ_API_DECL
void diff(const SubstitutionModification& a,
const SubstitutionModification& b,
SubstitutionModification& a_b,
SubstitutionModification& b_a,
const DiffConfig& config);
PWIZ_API_DECL
void diff(const Peptide& a,
const Peptide& b,
Peptide& a_b,
Peptide& b_a,
const DiffConfig& config);
PWIZ_API_DECL
void diff(const SequenceCollection& a,
const SequenceCollection& b,
SequenceCollection& a_b,
SequenceCollection& b_a,
const DiffConfig& config);
PWIZ_API_DECL
void diff(const Sample& a,
const Sample& b,
Sample& a_b,
Sample& b_a,
const DiffConfig& config);
PWIZ_API_DECL
void diff(const SearchModification& a,
const SearchModification& b,
SearchModification& a_b,
SearchModification& b_a,
const DiffConfig& config);
PWIZ_API_DECL
void diff(const SpectrumIdentificationItem& a,
const SpectrumIdentificationItem& b,
SpectrumIdentificationItem& a_b,
SpectrumIdentificationItem& b_a,
const DiffConfig& config);
PWIZ_API_DECL
void diff(const SpectrumIdentificationResult& a,
const SpectrumIdentificationResult& b,
SpectrumIdentificationResult& a_b,
SpectrumIdentificationResult& b_a,
const DiffConfig& config);
PWIZ_API_DECL
void diff(const AnalysisSampleCollection& a,
const AnalysisSampleCollection& b,
AnalysisSampleCollection& a_b,
AnalysisSampleCollection& b_a,
const DiffConfig& config);
PWIZ_API_DECL
void diff(const Provider& a,
const Provider& b,
Provider& a_b,
Provider& b_a,
const DiffConfig& config);
PWIZ_API_DECL
void diff(const ContactRole& a,
const ContactRole& b,
ContactRole& a_b,
ContactRole& b_a,
const DiffConfig& config);
PWIZ_API_DECL
void diff(const AnalysisSoftware& a,
const AnalysisSoftware& b,
AnalysisSoftware& a_b,
AnalysisSoftware& b_a,
const DiffConfig& config);
PWIZ_API_DECL
void diff(const IdentData& a,
const IdentData& b,
IdentData& a_b,
IdentData& b_a,
const DiffConfig& config);
PWIZ_API_DECL
void diff(const Identifiable& a,
const Identifiable& b,
Identifiable& a_b,
Identifiable& b_a,
const DiffConfig& config);
PWIZ_API_DECL
void diff(const IdentifiableParamContainer& a,
const IdentifiableParamContainer& b,
IdentifiableParamContainer& a_b,
IdentifiableParamContainer& b_a,
const DiffConfig& config);
} // namespace diff_impl
} // namespace data
} // namespace pwiz
// this include must come after the above declarations or GCC won't see them
#include "pwiz/data/common/diff_std.hpp"
namespace pwiz {
namespace identdata {
struct PWIZ_API_DECL DiffConfig : public pwiz::data::BaseDiffConfig
{
DiffConfig()
: BaseDiffConfig(1.2e-6) // Hack to make the maxdiff work
{}
};
PWIZ_API_DECL std::ostream& operator<<(std::ostream& os, const data::Diff<IdentData, DiffConfig>& diff);
} // namespace identdata
} // namespace pwiz
#endif // _MSIDDATA_DIFF_HPP_
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