/usr/include/libpwiz/pwiz/data/msdata/Serializer_mzML.hpp is in libpwiz-dev 3.0.9393-1+b2.
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// $Id: Serializer_mzML.hpp 1189 2009-08-14 17:36:06Z chambm $
//
//
// Original author: Darren Kessner <darren@proteowizard.org>
//
// Copyright 2007 Spielberg Family Center for Applied Proteomics
// Cedars-Sinai Medical Center, Los Angeles, California 90048
//
// Licensed under the Apache License, Version 2.0 (the "License");
// you may not use this file except in compliance with the License.
// You may obtain a copy of the License at
//
// http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing, software
// distributed under the License is distributed on an "AS IS" BASIS,
// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
// See the License for the specific language governing permissions and
// limitations under the License.
//
#ifndef _SERIALIZER_MZML_HPP_
#define _SERIALIZER_MZML_HPP_
#include "pwiz/utility/misc/Export.hpp"
#include "MSData.hpp"
#include "BinaryDataEncoder.hpp"
#include "pwiz/utility/misc/IterationListener.hpp"
namespace pwiz {
namespace msdata {
/// MSData <-> mzML stream serialization
class PWIZ_API_DECL Serializer_mzML
{
public:
/// Serializer_mzML configuration
struct PWIZ_API_DECL Config
{
/// configuration for binary data encoding in write()
/// note: byteOrder is ignored (mzML always little endian)
BinaryDataEncoder::Config binaryDataEncoderConfig;
/// (indexed==true): read/write with <indexedmzML> wrapper
bool indexed;
Config() : indexed(true) {}
};
/// constructor
Serializer_mzML(const Config& config = Config());
/// write MSData object to ostream as mzML;
/// iterationListenerRegistry may be used to receive progress updates
void write(std::ostream& os, const MSData& msd,
const pwiz::util::IterationListenerRegistry* iterationListenerRegistry = 0) const;
/// read in MSData object from an mzML istream
/// note: istream may be managed by MSData's SpectrumList, to allow for
/// lazy evaluation of Spectrum data
void read(boost::shared_ptr<std::istream> is, MSData& msd) const;
private:
class Impl;
boost::shared_ptr<Impl> impl_;
Serializer_mzML(Serializer_mzML&);
Serializer_mzML& operator=(Serializer_mzML&);
};
PWIZ_API_DECL std::ostream& operator<<(std::ostream& os, const Serializer_mzML::Config& config);
} // namespace msdata
} // namespace pwiz
#endif // _SERIALIZER_MZML_HPP_
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