/usr/include/libpwiz/pwiz/utility/misc/MSIHandler.hpp is in libpwiz-dev 3.0.9393-1+b2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 | //
// $Id: MSIHandler.hpp 7297 2015-03-12 05:30:33Z paragmallick $
//
//
// Original author: Robert Burke <robert.burke@proteowizard.org>
//
// Copyright 2008 Spielberg Family Center for Applied Proteomics
// Cedars-Sinai Medical Center, Los Angeles, California 90048
//
// Licensed under the Apache License, Version 2.0 (the "License");
// you may not use this file except in compliance with the License.
// You may obtain a copy of the License at
//
// http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing, software
// distributed under the License is distributed on an "AS IS" BASIS,
// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
// See the License for the specific language governing permissions and
// limitations under the License.
//
#ifndef _MSIREADER_HPP_
#define _MSIREADER_HPP_
#include "pwiz/utility/misc/Export.hpp"
#include "TabReader.hpp"
#include "boost/shared_ptr.hpp"
namespace pwiz {
namespace util {
class PWIZ_API_DECL MSIHandler : public DefaultTabHandler
{
public:
struct Record
{
Record() : scan(0), time(0), mz(0), intensity(0), charge(0), chargeStates(0), kl(0), background(0), median(0), peaks(0), scanFirst(0), scanLast(0), scanCount(0) {}
Record(const std::vector<std::string>& fields);
Record(const Record& r);
size_t scan;
float time;
float mz;
float mass;
float intensity;
int charge;
int chargeStates;
float kl;
float background;
float median;
int peaks;
int scanFirst;
int scanLast;
int scanCount;
};
MSIHandler();
virtual ~MSIHandler() {}
virtual bool updateRecord(const std::vector<std::string>& fields);
size_t size() const;
Record record(size_t index) const;
Record lastRecord() const;
private:
class Impl;
boost::shared_ptr<Impl> pimpl;
};
} // namespace pwiz
} // namespace utility
#endif // _MSIREADER_HPP_
|