/usr/include/sbml/math/ASTNode.h is in libsbml5-dev 5.13.0+dfsg-1.
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* @file ASTNode.h
* @brief Abstract Syntax Tree (AST) for representing formula trees.
* @author Sarah Keating
*
* <!--------------------------------------------------------------------------
* This file is part of libSBML. Please visit http://sbml.org for more
* information about SBML, and the latest version of libSBML.
*
* Copyright (C) 2013-2016 jointly by the following organizations:
* 1. California Institute of Technology, Pasadena, CA, USA
* 2. EMBL European Bioinformatics Institute (EMBL-EBI), Hinxton, UK
* 3. University of Heidelberg, Heidelberg, Germany
*
* Copyright (C) 2009-2013 jointly by the following organizations:
* 1. California Institute of Technology, Pasadena, CA, USA
* 2. EMBL European Bioinformatics Institute (EMBL-EBI), Hinxton, UK
*
* Copyright (C) 2006-2008 by the California Institute of Technology,
* Pasadena, CA, USA
*
* Copyright (C) 2002-2005 jointly by the following organizations:
* 1. California Institute of Technology, Pasadena, CA, USA
* 2. Japan Science and Technology Agency, Japan
*
* This library is free software; you can redistribute it and/or modify it
* under the terms of the GNU Lesser General Public License as published by
* the Free Software Foundation. A copy of the license agreement is provided
* in the file named "LICENSE.txt" included with this software distribution and
* also available online as http://sbml.org/software/libsbml/license.html
* ------------------------------------------------------------------------ -->
*
* @class ASTNode
* @sbmlbrief{core} Abstract Syntax Trees for mathematical expressions.
*
* @htmlinclude not-sbml-warning.html
*
* <a target="_blank"
* href="http://en.wikipedia.org/wiki/Abstract_syntax_tree">Abstract Syntax
* Trees</a> (ASTs) are a simple kind of data structure used in libSBML for
* storing mathematical expressions. LibSBML ASTs provide a canonical,
* in-memory representation for all mathematical formulas regardless of their
* original format (which might be MathML or might be text strings).
*
* @copydetails doc_what_is_astnode
*
* @if clike <h3><a class="anchor" name="ASTNodeType_t">
* ASTNodeType_t</a></h3> @else <h3><a class="anchor"
* name="ASTNodeType_t">The set of possible %ASTNode types</a></h3> @endif@~
*
* @copydetails doc_astnode_types
*
* <h3><a class="anchor" name="math-convert">Converting between ASTs and text
* strings</a></h3>
*
* The text-string form of mathematical formulas produced by
* @sbmlfunction{formulaToString, String} and
* @sbmlfunction{formulaToL3String, String}, and read by
* @sbmlfunction{parseFormula, ASTNode} and
* @sbmlfunction{parseL3Formula, ASTNode}, are in a simple C-inspired
* infix notation. A formula in one of these two text-string formats can be
* handed to a program that understands SBML mathematical expressions, or
* used as part of a translation system. The libSBML distribution comes with
* example programs in the @c "examples" subdirectory that demonstrate such
* things as translating infix formulas into MathML and vice-versa.
*
* Please see the documentation for the functions @sbmlfunction{parseFormula,
* ASTNode} and @sbmlfunction{parseL3Formula, ASTNode} for detailed
* explanations of the infix syntax they accept.
*
* <h3><a class="anchor" name="math-history">Historical notes</a></h3>
*
* Readers may wonder why this part of libSBML uses a seemingly less
* object-oriented design thanother parts. Originally, much of libSBML was
* written in C. All subsequent development was done in C++, but the
* complexity of some of the functionality for converting between infix, AST
* and MathML, coupled with the desire to maintain stability and backward
* compatibility, means that some of the underlying code is still written
* in C. This has lead to the exposed API being more C-like.
* @see @sbmlfunction{parseL3Formula, String}
* @see @sbmlfunction{parseL3FormulaWithSettings, String\, L3ParserSettings}
* @see @sbmlfunction{parseL3FormulaWithModel, String\, Model}
* @see @sbmlfunction{parseFormula, String}
* @see @sbmlfunction{formulaToL3StringWithSettings, ASTNode\, L3ParserSettings}
* @see @sbmlfunction{formulaToL3String, ASTNode}
* @see @sbmlfunction{formulaToString, ASTNode}
* @see @sbmlfunction{getDefaultL3ParserSettings,}
*/
/**
* <!-- ~ ~ ~ ~ ~ Start of common documentation strings ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~
* The following text is used as common documentation blocks copied multiple
* times elsewhere in this file. The use of @class is a hack needed because
* Doxygen's @copydetails command has limited functionality. Symbols
* beginning with "doc_" are marked as ignored in our Doxygen configuration.
* ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ -->
*
* @class doc_warning_modifying_structure
*
* @warning Explicitly adding, removing or replacing children of an
* @if conly ASTNode_t structure@else ASTNode object@endif@~ may change the
* structure of the mathematical formula it represents, and may even render
* the representation invalid. Callers need to be careful to use this method
* in the context of other operations to create complete and correct
* formulas. The method
* @if conly ASTNode_isWellFormedASTNode()@else ASTNode::isWellFormedASTNode()@endif@~
* may also be useful for checking the results of node modifications.
*
* <!-- ------------------------------------------------------------------- -->
* @class doc_about_mathml_semantic_annotations
*
* The <code><semantics></code> element is a MathML 2.0 construct
* that can be used to associate additional information with a MathML
* construct. The construct can be used to decorate a MathML expressions with
* a sequence of one or more <code><annotation></code> or
* <code><annotation-xml></code> elements. Each such element contains a
* pair of items; the first is a symbol that acts as an attribute or key, and
* the second is the value associated with the attribute or key. Please refer
* to the MathML 2.0 documentation, particularly the <a target="_blank"
* href="http://www.w3.org/TR/2007/WD-MathML3-20071005/chapter5.html#mixing.semantic.annotations">Section
* 5.2, Semantic Annotations</a> for more information about these constructs.
*
* <!-- ------------------------------------------------------------------- -->
* @class doc_note_mathml_semantic_annotations_uncommon
*
* @note Although SBML permits the use of the MathML
* <code><semantics></code> annotation construct, the truth is that
* this construct has so far (at this time of this writing, which is early
* 2014) seen very little use in SBML software. The full implications of
* using these annotations are still poorly understood. If you wish to
* use this construct, we urge you to discuss possible uses and applications
* on the SBML discussion lists, particularly <a target="_blank"
* href="http://sbml.org/Forums">sbml-discuss</a> and/or <a target="_blank"
* href="http://sbml.org/Forums">sbml-interoperability</a>.
*/
#ifndef ASTNode_h
#define ASTNode_h
#include <sbml/common/extern.h>
#include <sbml/common/sbmlfwd.h>
#include <sbml/math/FormulaTokenizer.h>
#include <sbml/math/ASTFunction.h>
#include <sbml/math/ASTNumber.h>
#include <sbml/math/ASTTypes.h>
#include <sbml/math/ASTBase.h>
LIBSBML_CPP_NAMESPACE_BEGIN
/**
* @typedef ASTNodePredicate
* @brief Function signature for use with
* @if conly ASTNode_fillListOfNodes() @else ASTNode::fillListOfNodes() @endif
* and @if conly ASTNode_getListOfNodes() @else ASTNode::getListOfNodes() @endif.
*
* A pointer to a function that takes an ASTNode and returns @if conly @c 1
* (true) or @c 0 (false) @else @c true (nonzero) or @c false (0)@endif.
*
* @if conly @see ASTNode_getListOfNodes()@else @see ASTNode::getListOfNodes()@endif
* @if conly @see ASTNode_fillListOfNodes()@else @see ASTNode::fillListOfNodes()@endif
*
* @if conly
* @memberof ASTNode_t
* @endif
*/
typedef int (*ASTNodePredicate) (const ASTNode_t *node);
LIBSBML_CPP_NAMESPACE_END
#ifdef __cplusplus
LIBSBML_CPP_NAMESPACE_BEGIN
class LIBSBML_EXTERN ASTNode : public ASTBase
{
public:
/**
* Creates a new ASTNode.
*
* Unless the argument @p type is given, the returned node will by default
* have a type of @sbmlconstant{AST_UNKNOWN, ASTNodeType_t}. If the type
* isn't supplied when caling this constructor, the caller should set the
* node type to something else as soon as possible using
* @if clike setType()@else ASTNode::setType(int)@endif.
*
* @param type an optional
* @if clike #ASTNodeType_t@else integer type@endif@~
* code indicating the type of node to create.
*
* @ifnot hasDefaultArgs @htmlinclude warn-default-args-in-docs.html @endif@~
*/
ASTNode (ASTNodeType_t type);
/** @cond doxygenLibsbmlInternal */
/* constructor for use by mathml reader */
ASTNode(SBMLNamespaces* sbmlns, ASTNodeType_t type);
/** @endcond */
/** @cond doxygenLibsbmlInternal */
/*
* Creates and returns a new ASTNode.
*/
ASTNode (int type = AST_UNKNOWN);
/** @endcond */
/** @cond doxygenLibsbmlInternal */
/* constructor for use by mathml reader */
ASTNode(SBMLNamespaces* sbmlns, int type = AST_UNKNOWN);
/** @endcond */
/**
* Creates a new ASTNode from the given Token.
*
* The resulting ASTNode will contain the same data as the given @p token.
*
* @param token the token to use as a starting point for creating the
* ASTNode object.
*/
ASTNode (Token_t *token);
/**
* Copy constructor; creates a deep copy of the given ASTNode.
*
* @param orig the ASTNode to be copied.
*/
ASTNode (const ASTNode& orig);
/**
* Assignment operator for ASTNode.
*/
ASTNode& operator=(const ASTNode& rhs);
/**
* Destroys this ASTNode, including any child nodes.
*/
virtual ~ASTNode ();
/**
* Frees the name of this ASTNode and sets it to @c NULL.
*
* This operation is only applicable to ASTNode objects corresponding to
* operators, numbers, or @sbmlconstant{AST_UNKNOWN, ASTNodeType_t}. This
* method has no effect on other types of nodes.
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_UNEXPECTED_ATTRIBUTE, OperationReturnValues_t}
*/
int freeName ();
/**
* Converts this ASTNode to a canonical form.
*
* The rules determining the canonical form conversion are as follows:
*
* @li If the node type is @sbmlconstant{AST_NAME, ASTNodeType_t}
* and the node name matches @c "ExponentialE", @c "Pi", @c "True" or @c
* "False" the node type is converted to the corresponding
* <code>AST_CONSTANT_</code><em><span class="placeholder">X</span></em> type.
* @li If the node type is an @sbmlconstant{AST_FUNCTION, ASTNodeType_t} and
* the node name matches an SBML (MathML) function name, logical operator name,
* or relational operator name, the node is converted to the corresponding
* <code>AST_FUNCTION_</code><em><span class="placeholder">X</span></em> or
* <code>AST_LOGICAL_</code><em><span class="placeholder">X</span></em> type.
*
* SBML Level 1 function names are searched first; thus, for example,
* canonicalizing @c log will result in a node type of
* @sbmlconstant{AST_FUNCTION_LN, ASTNodeType_t}. (See the SBML
* Level 1 Version 2 Specification, Appendix C.)
*
* Sometimes, canonicalization of a node results in a structural conversion
* of the node as a result of adding a child. For example, a node with the
* SBML Level 1 function name @c sqr and a single child node (the
* argument) will be transformed to a node of type
* @sbmlconstant{AST_FUNCTION_POWER, ASTNodeType_t} with two children. The
* first child will remain unchanged, but the second child will be an
* ASTNode of type @sbmlconstant{AST_INTEGER, ASTNodeType_t} and a value of
* 2. The function names that result in structural changes are: @c log10,
* @c sqr, and @c sqrt.
*
* @return @c true if this node was successfully converted to
* canonical form, @c false otherwise.
*/
bool canonicalize ();
/**
* Adds the given node as a child of this ASTNode.
*
* Child nodes are added in-order, from left to right.
*
* @param disownedChild the ASTNode instance to add
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_OPERATION_FAILED, OperationReturnValues_t}
*
* @copydetails doc_warning_modifying_structure
*
* @see prependChild(ASTNode* disownedChild)
* @see replaceChild(unsigned int n, ASTNode* disownedChild, bool delreplaced)
* @see insertChild(unsigned int n, ASTNode* disownedChild)
* @see removeChild(unsigned int n)
* @see isWellFormedASTNode()
*/
int addChild (ASTNode* disownedChild);
/**
* Adds the given node as a child of this ASTNode.
*
* This method adds child nodes from right to left.
*
* @param disownedChild the ASTNode instance to add
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_OPERATION_FAILED, OperationReturnValues_t}
*
* @copydetails doc_warning_modifying_structure
*
* @see addChild(ASTNode* disownedChild)
* @see replaceChild(unsigned int n, ASTNode* disownedChild, bool delreplaced)
* @see insertChild(unsigned int n, ASTNode* disownedChild)
* @see removeChild(unsigned int n)
*/
int prependChild (ASTNode* disownedChild);
/**
* Removes the nth child of this ASTNode object.
*
* @param n unsigned int the index of the child to remove
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_INDEX_EXCEEDS_SIZE, OperationReturnValues_t}
*
* @copydetails doc_warning_modifying_structure
*
* @see addChild(ASTNode* disownedChild)
* @see prependChild(ASTNode* disownedChild)
* @see replaceChild(unsigned int n, ASTNode* disownedChild, bool delreplaced)
* @see insertChild(unsigned int n, ASTNode* disownedChild)
*/
int removeChild(unsigned int n);
/**
* Replaces the nth child of this ASTNode with the given ASTNode.
*
* @param n unsigned int the index of the child to replace
* @param disownedChild ASTNode to replace the nth child
* @param delreplaced boolean indicating whether to delete the replaced child.
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_INDEX_EXCEEDS_SIZE, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_INVALID_OBJECT, OperationReturnValues_t}
*
* @copydetails doc_warning_modifying_structure
*
* @see addChild(ASTNode* disownedChild)
* @see prependChild(ASTNode* disownedChild)
* @see insertChild(unsigned int n, ASTNode* disownedChild)
* @see removeChild(unsigned int n)
*/
int replaceChild(unsigned int n, ASTNode *disownedChild, bool delreplaced=false);
/**
* Inserts the given ASTNode node at a given point in the current ASTNode's
* list of children.
*
* @param n unsigned int the index of the ASTNode being added
* @param disownedChild ASTNode to insert as the nth child
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_INDEX_EXCEEDS_SIZE, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_INVALID_OBJECT, OperationReturnValues_t}
*
* @copydetails doc_warning_modifying_structure
*
* @see addChild(ASTNode* disownedChild)
* @see prependChild(ASTNode* disownedChild)
* @see replaceChild(unsigned int n, ASTNode* disownedChild, bool delreplaced)
* @see removeChild(unsigned int n)
*/
int insertChild(unsigned int n, ASTNode *disownedChild);
/**
* Creates a recursive copy of this node and all its children.
*
* @return a copy of this ASTNode and all its children. The caller owns
* the returned ASTNode and is responsible for deleting it.
*/
ASTNode* deepCopy () const;
/**
* Returns the child at index n of this node.
*
* @param n the index of the child to get
*
* @return the nth child of this ASTNode or @c NULL if this node has no nth
* child (<code>n > </code>
* @if clike getNumChildren()@else ASTNode::getNumChildren()@endif@~
* <code>- 1</code>).
*
* @see getNumChildren()
* @see getLeftChild()
* @see getRightChild()
*/
virtual ASTNode* getChild (unsigned int n) const;
/**
* Returns the left child of this node.
*
* @return the left child of this ASTNode. This is equivalent to calling
* @if clike getChild()@else ASTNode::getChild(unsigned int)@endif@~
* with an argument of @c 0.
*
* @see getNumChildren()
* @see getChild(@if java unsigned int@endif)
* @see getRightChild()
*/
ASTNode* getLeftChild () const;
/**
* Returns the right child of this node.
*
* @return the right child of this ASTNode, or @c NULL if this node has no
* right child. If
* @if clike getNumChildren()@else ASTNode::getNumChildren()@endif@~
* <code>> 1</code>, then this is equivalent to:
* @verbatim
getChild( getNumChildren() - 1 );
@endverbatim
*
* @see getNumChildren()
* @see getLeftChild()
* @see getChild(@if java unsigned int@endif)
*/
ASTNode* getRightChild () const;
/**
* Returns the number of children of this node.
*
* @return the number of children of this ASTNode, or 0 is this node has
* no children.
*/
unsigned int getNumChildren () const;
/**
* Adds the given XMLNode as a MathML <code><semantics></code>
* element to this ASTNode.
*
* @copydetails doc_about_mathml_semantic_annotations
*
* @param disownedAnnotation the annotation to add.
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_OPERATION_FAILED, OperationReturnValues_t}
*
* @copydetails doc_note_mathml_semantic_annotations_uncommon
*
* @see ASTNode::getNumSemanticsAnnotations()
* @see ASTNode::getSemanticsAnnotation(@if java unsigned int@endif)
*/
int addSemanticsAnnotation (XMLNode* disownedAnnotation);
/**
* Returns the number of MathML <code><semantics></code> element
* elements on this node.
*
* @copydetails doc_about_mathml_semantic_annotations
*
* @return the number of annotations of this ASTNode.
*
* @copydetails doc_note_mathml_semantic_annotations_uncommon
*
* @see ASTNode::addSemanticsAnnotation(@if java XMLNode@endif)
* @see ASTNode::getSemanticsAnnotation(@if java unsigned int@endif)
*/
unsigned int getNumSemanticsAnnotations () const;
/**
* Returns the nth MathML <code><semantics></code> element on this
* ASTNode.
*
* @copydetails doc_about_mathml_semantic_annotations
*
* @param n the index of the annotation to return. Callers should
* use ASTNode::getNumSemanticsAnnotations() to first find out how
* many annotations there are.
*
* @return the nth annotation inside this ASTNode, or @c NULL if this node has
* no nth annotation (<code>n ></code>
* @if clike getNumSemanticsAnnotations()@else ASTNode::getNumSemanticsAnnotations()@endif@~
* <code>- 1</code>).
*
* @copydetails doc_note_mathml_semantic_annotations_uncommon
*
* @see ASTNode::addSemanticsAnnotation(@if java XMLNode@endif)
* @see ASTNode::getNumSemanticsAnnotations()
*/
XMLNode* getSemanticsAnnotation (unsigned int n) const;
/**
* Returns a list of nodes satisfying a given predicate.
*
* This performs a depth-first search of the tree rooted at this ASTNode
* object, and returns a List of nodes for which the given function
* <code>predicate(node)</code> returns @c true. For portability between
* different programming languages, the predicate is passed in as a pointer
* to a function. @if clike The function definition must have the type
* @link ASTNode.h::ASTNodePredicate ASTNodePredicate@endlink, which is defined as
* @code{.cpp}
int (*ASTNodePredicate) (const ASTNode *node);
@endcode
* where a return value of nonzero represents @c true and zero
* represents @c false. @endif
*
* @param predicate the predicate to use
*
* @return the list of nodes for which the predicate returned @c true.
* The List returned is owned by the caller and should be
* deleted after the caller is done using it. The ASTNode objects in the
* list; however, are not owned by the caller (as they still belong to
* the tree itself), and therefore should not be deleted.
*
* @see ASTNode::fillListOfNodes(@if java ASTNodePredicate, List@endif)
*/
List* getListOfNodes (ASTNodePredicate predicate) const;
/**
* Returns a list of nodes rooted at a given node and satisfying a given
* predicate.
*
* This method is identical to calling
* ASTNode::getListOfNodes(@if java ASTNodePredicate@endif), except
* that instead of creating a new List object, it uses the one passed in as
* argument @p lst. This method a depth-first search of the tree rooted at
* this ASTNode object, and adds to the list @p lst the nodes for which the
* given function <code>predicate(node)</code> returns @c true.
*
* For portability between different programming languages, the predicate
* is passed in as a pointer to a function. The function definition must
* have the type @link ASTNode.h::ASTNodePredicate
* ASTNodePredicate@endlink, which is defined as
* @code{.cpp}
int (*ASTNodePredicate) (const ASTNode_t *node);
@endcode
* where a return value of nonzero represents @c true and zero
* represents @c false.
*
* @param predicate the predicate to use.
*
* @param lst the List to which ASTNode objects should be added.
*
* @see getListOfNodes(@if java ASTNodePredicate@endif)
*/
void fillListOfNodes (ASTNodePredicate predicate, List* lst) const;
/**
* Returns the value of this node as a single character.
*
* This function should be called only when ASTNode::getType() returns
* @sbmlconstant{AST_MINUS, ASTNodeType_t}, @sbmlconstant{AST_TIMES,
* ASTNodeType_t}, @sbmlconstant{AST_DIVIDE, ASTNodeType_t} or
* @sbmlconstant{AST_POWER, ASTNodeType_t}.
*
* @return the value of this ASTNode as a single character
*/
char getCharacter () const;
/**
* Returns the MathML @c id attribute value of this ASTNode.
*
* @return the MathML id of this ASTNode.
*
* @see isSetId()
* @see setId(@if java const std::string& id@endif)
* @see unsetId()
*/
std::string getId () const;
/**
* Returns the MathML @c class attribute value of this ASTNode.
*
* @return the MathML class of this ASTNode, if any exists.
*
* @see isSetClass()
* @see @if java setClassName(const std::string& id)@else setClass()@endif@~
* @see unsetClass()
*/
std::string getClass () const;
/**
* Returns the MathML @c style attribute value of this ASTNode.
*
* @return the MathML style of this ASTNode, if any exists.
*
* @see isSetStyle()
* @see setStyle(@if java const std::string& id@endif)
* @see unsetStyle()
*/
std::string getStyle () const;
/**
* Returns the value of this node as an integer.
*
* If this node type is @sbmlconstant{AST_RATIONAL, ASTNodeType_t}, this
* method returns the value of the numerator.
*
* @return the value of this ASTNode as a (<code>long</code>) integer.
*
* @note This function should be called only when
* @if clike getType()@else ASTNode::getType()@endif@~ returns
* @sbmlconstant{AST_INTEGER, ASTNodeType_t} or
* @sbmlconstant{AST_RATIONAL, ASTNodeType_t}.
* It will return @c 0 if the node type is @em not one of these, but since
* @c 0 may be a valid value for integer, it is important to be sure that
* the node type is one of the expected types in order to understand if @c
* 0 is the actual value.
*/
long getInteger () const;
/**
* Returns the value of this node as a string.
*
* This function may be called on nodes that (1) are not operators, i.e.,
* nodes for which @if clike isOperator()@else ASTNode::isOperator()@endif@~
* returns @c false, and (2) are not numbers, i.e.,
* @if clike isNumber()@else ASTNode::isNumber()@endif@~ returns @c false.
*
* @return the value of this ASTNode as a string, or @c NULL if it is
* a node that does not have a name equivalent (e.g., if it is a number).
*/
const char* getName () const;
/**
* Returns the value of this operator node as a string.
*
* This function may be called on nodes that are operators, i.e., nodes for
* which @if clike isOperator()@else ASTNode::isOperator()@endif@~ returns
* @c true.
*
* @return the name of this operator ASTNode as a string (or @c NULL if not
* an operator).
*/
const char* getOperatorName () const;
/**
* Returns the value of the numerator of this node.
*
* This function should be called only when
* @if clike getType()@else ASTNode::getType()@endif@~ returns
* @sbmlconstant{AST_RATIONAL, ASTNodeType_t} or
* @sbmlconstant{AST_INTEGER, ASTNodeType_t}.
*
* @return the value of the numerator of this ASTNode.
*/
long getNumerator () const;
/**
* Returns the value of the denominator of this node.
*
* @return the value of the denominator of this ASTNode, or @c 1 if
* this node has no numerical value.
*
* @note This function should be called only when
* @if clike getType()@else ASTNode::getType()@endif@~ returns
* @sbmlconstant{AST_RATIONAL, ASTNodeType_t}.
* It will return @c 1 if the node type is another type, but since @c 1 may
* be a valid value for the denominator of a rational number, it is
* important to be sure that the node type is the correct type in order to
* correctly interpret the returned value.
*/
long getDenominator () const;
/**
* Returns the real-numbered value of this node.
*
* This function performs the necessary arithmetic if the node type is
* @sbmlconstant{AST_REAL_E, ASTNodeType_t} (<em>mantissa *
* 10<sup> exponent</sup></em>) or
* @sbmlconstant{AST_RATIONAL, ASTNodeType_t}
* (<em>numerator / denominator</em>).
*
* @return the value of this ASTNode as a real (double), or @c 0
* if this is not a node that holds a number.
*
* @note This function should be called only when this ASTNode has a
* numerical value type. It will return @c 0 if the node type is another
* type, but since @c 0 may be a valid value, it is important to be sure
* that the node type is the correct type in order to correctly interpret
* the returned value.
*/
double getReal () const;
/**
* Returns the mantissa value of this node.
*
* If @if clike getType()@else ASTNode::getType()@endif@~ returns
* @sbmlconstant{AST_REAL, ASTNodeType_t}, this method is
* identical to ASTNode::getReal().
*
* @return the value of the mantissa of this ASTNode, or @c 0 if this
* node is not a type that has a real-numbered value.
*
* @note This function should be called only when
* @if clike getType()@else ASTNode::getType()@endif@~ returns
* @sbmlconstant{AST_REAL_E, ASTNodeType_t},
* @sbmlconstant{AST_REAL, ASTNodeType_t} or
* @sbmlconstant{AST_NAME_AVOGADRO, ASTNodeType_t}. It
* will return @c 0 if the node type is another type, but since @c 0 may be
* a valid value, it is important to be sure that the node type is the
* correct type in order to correctly interpret the returned value.
*/
double getMantissa () const;
/**
* Returns the exponent value of this ASTNode.
*
* @return the value of the exponent of this ASTNode, or @c 0 if this
* is not a type of node that has an exponent.
*
* @note This function should be called only when
* @if clike getType()@else ASTNode::getType()@endif@~
* returns @sbmlconstant{AST_REAL_E, ASTNodeType_t}.
* It will return @c 0 if the node type is another type, but since @c 0 may
* be a valid value, it is important to be sure that the node type is the
* correct type in order to correctly interpret the returned value.
*/
long getExponent () const;
/**
* Returns the numerical value of this ASTNode.
*
* @return the numerical value of this ASTNode, or @c NaN if this
* is not a type of node that has a numerical value.
*
* @note This function will return a numerical value (as a double) for
* any ASTNode_t that represents a number, a constant such as
* @sbmlconstant{AST_CONSTANT_PI, ASTNodeType_t},
* @sbmlconstant{AST_CONSTANT_E, ASTNodeType_t}, or
* @sbmlconstant{AST_NAME_AVOGADRO, ASTNodeType_t}, or
* @c 1 for nodes of type
* @sbmlconstant{AST_CONSTANT_TRUE, ASTNodeType_t} and @c 0 for nodes of type
* @sbmlconstant{AST_CONSTANT_FALSE, ASTNodeType_t}. It does not evaluate
* the node in any way so, for example, it will not return the value of
* a named ASTNode_t or attempt to evaluate a function.
* This includes a node representing @c time i.e. nodes
* of type @sbmlconstant{AST_NAME_TIME, ASTNodeType_t}.
*/
double getValue() const;
/**
* Returns the precedence of this node in the infix math syntax of SBML
* Level 1.
*
* For more information about the infix syntax, see the discussion about <a
* href="#math-convert">text string formulas</a> at the top of the
* documentation for ASTNode.
*
* @return an integer indicating the precedence of this ASTNode
*/
int getPrecedence () const;
/**
* Returns the type of this ASTNode.
*
* The value returned is one of the Core AST type codes such as
* @sbmlconstant{AST_LAMBDA, ASTNodeType_t},
* @sbmlconstant{AST_PLUS, ASTNodeType_t}, etc.
*
* @return the type of this ASTNode.
*
* @note The introduction of extensibility in SBML Level 3 brings with
* it a need to allow for the possibility of node types that are defined by
* plug-ins implementing SBML Level 3 packages. If a given ASTNode is
* a construct created by a package rather than libSBML Core, then
* getType() will return
* @sbmlconstant{AST_ORIGINATES_IN_PACKAGE, ASTNodeType_t}.
* Callers can then obtain the package-specific type by
* calling getExtendedType().
*
* @see getExtendedType()
*/
ASTNodeType_t getType () const;
/**
* Returns the extended type of this ASTNode.
*
* The type may be either a core
* @ifnot clike integer type code@else #ASTNodeType_t value@endif
* or a value of a type code defined by an SBML Level 3 package.
*
* @return the type of this ASTNode.
*
* @note When the ASTNode is of a type from a package, the value returned
* by ASTNode::getType() will be
* @sbmlconstant{AST_ORIGINATES_IN_PACKAGE, ASTNodeType_t}
* and getExtendedType() will return a package-specific type
* code. To find out the possible package-specific types (if any), please
* consult the documentation for the particular package.
*
* @see getType()
*/
virtual int getExtendedType() const;
/**
* Returns the units of this ASTNode.
*
* @htmlinclude about-sbml-units-attrib.html
*
* @return the units of this ASTNode.
*
* @note The <code>sbml:units</code> attribute is only available in SBML
* Level 3. It may not be used in Levels 1–2 of SBML.
*
* @see @sbmlfunction{parseL3Formula, String}
*/
std::string getUnits () const;
/**
* Returns @c true if this node represents the predefined
* value for Avogadro's constant.
*
* SBML Level 3 introduced a predefined MathML <code><csymbol></code>
* for the value of Avogadro's constant. LibSBML stores this internally as
* a node of type @sbmlconstant{AST_NAME_AVOGADRO, ASTNodeType_t}.
* This method returns @c true if this node has that type.
*
* @return @c true if this ASTNode is the special symbol avogadro,
* @c false otherwise.
*
* @see @sbmlfunction{parseL3Formula, String}
*/
virtual bool isAvogadro () const;
/**
* Returns @c true if this node has a Boolean type.
*
* The ASTNode objects that have Boolean types are the logical operators,
* relational operators, and the constants @c true or @c false.
*
* @return @c true if this ASTNode has a Boolean type, @c false otherwise.
*/
virtual bool isBoolean () const;
/**
* Returns @c true if this node returns a Boolean value.
*
* This function looks at the whole ASTNode rather than just the top level
* of the ASTNode. Thus, it will consider return values from piecewise
* statements. In addition, if this ASTNode uses a function call to a
* user-defined function, the return value of the corresponding
* FunctionDefinition object will be determined. Note that this is only
* possible where the ASTNode can trace its parent Model; that is, the
* ASTNode must represent the <code><math></code> element of some
* SBML object that has already been added to an instance of an
* SBMLDocument.
*
* @param model the Model to use as context
*
* @see isBoolean()
*
* @return true if this ASTNode returns a boolean, @c false otherwise.
*/
bool returnsBoolean (const Model* model=NULL) const;
/**
* Returns @c true if this node represents a MathML
* constant.
*
* Examples of MathML constants include such things as pi.
*
* @return @c true if this ASTNode is a MathML constant, @c false
* otherwise.
*
* @note This function will also return @c true for nodes of type
* @sbmlconstant{AST_NAME_AVOGADRO, ASTNodeType_t} in SBML Level 3.
*/
virtual bool isConstant () const;
/**
* Returns @c true if this node represents a function.
*
* The three types of functions in SBML are MathML functions (e.g.,
* <code>abs()</code>), SBML Level 1 functions (in the SBML
* Level 1 math syntax), and user-defined functions (using
* FunctionDefinition in SBML Level 2 and 3).
*
* @return @c true if this ASTNode is a function, @c false otherwise.
*/
virtual bool isFunction () const;
/**
* Returns @c true if this node represents the special IEEE 754
* value for infinity.
*
* @return @c true if this ASTNode is the special IEEE 754 value infinity,
* @c false otherwise.
*/
bool isInfinity () const;
/**
* Returns @c true if this node contains an integer value.
*
* @return @c true if this ASTNode is of type @sbmlconstant{AST_INTEGER,
* ASTNodeType_t}, @c false otherwise.
*/
virtual bool isInteger () const;
/**
* Returns @c true if this node is a MathML
* <code><lambda></code>.
*
* @return @c true if this ASTNode is of type @sbmlconstant{AST_LAMBDA,
* ASTNodeType_t}, @c false otherwise.
*/
virtual bool isLambda () const;
/**
* Returns @c true if this node represents a @c log10 function.
*
* More precisely, this predicate returns @c true if the node type is
* @sbmlconstant{AST_FUNCTION_LOG, ASTNodeType_t} with two children, the
* first of which is an @sbmlconstant{AST_INTEGER, ASTNodeType_t} equal to
* 10.
*
* @return @c true if the given ASTNode represents a @c log10() function, @c
* false otherwise.
*
* @see @sbmlfunction{parseL3Formula, String}
*/
virtual bool isLog10 () const;
/**
* Returns @c true if this node is a MathML logical operator.
*
* The possible MathML logical operators are @c and, @c or, @c not, and @c
* xor.
*
* @return @c true if this ASTNode is a MathML logical operator, @c false
* otherwise.
*/
virtual bool isLogical () const;
/**
* Returns @c true if this node is a user-defined variable name
* or the symbols for time or Avogadro's constant.
*
* SBML Levels 2 and 3 provides <code><csymbol></code>
* definitions for "time" and "avogadro", which can be used to represent
* simulation time and Avogadro's constant in MathML. Note that this
* method does @em not return @c true for the other <code>csymbol</code>
* values defined by SBML, "delay", because the "delay" is a function
* and not a constant or variable.
*
* @return @c true if this ASTNode is a user-defined variable name in SBML
* or the special symbols for time or Avogadro's constant. It returns @c
* false otherwise.
*/
virtual bool isName () const;
/**
* Returns @c true if this node represents the special IEEE 754
* value "not a number" (NaN).
*
* @return @c true if this ASTNode is the special IEEE 754 NaN, @c false
* otherwise.
*/
bool isNaN () const;
/**
* Returns @c true if this node represents the special IEEE 754
* value "negative infinity".
*
* @return @c true if this ASTNode is the special IEEE 754 value negative
* infinity, @c false otherwise.
*/
bool isNegInfinity () const;
/**
* Returns @c true if this node contains a number.
*
* @return @c true if this ASTNode is a number, @c false otherwise.
*/
virtual bool isNumber () const;
/**
* Returns @c true if this node is a mathematical
* operator.
*
* The possible mathematical operators in the MathML syntax supported by
* SBML are <code>+</code>, <code>-</code>, <code>*</code>, <code>/</code>
* and <code>^</code> (power).
*
* @return @c true if this ASTNode is an operator, @c false otherwise.
*/
virtual bool isOperator () const;
/**
* Returns @c true if this node is the MathML
* <code><piecewise></code> construct.
*
* @return @c true if this ASTNode is a MathML @c piecewise function,
* @c false otherwise.
*/
virtual bool isPiecewise () const;
/**
* Predicate returning @c true if this node is a MathML
* qualifier.
*
* The MathML qualifier node types are @c bvar, @c degree, @c base, @c
* piece, and @c otherwise.
*
* @return @c true if this ASTNode is a MathML qualifier, @c false
* otherwise.
*/
virtual bool isQualifier() const;
/**
* Returns @c true if this node represents a rational number.
*
* @return @c true if this ASTNode is of type @sbmlconstant{AST_RATIONAL,
* ASTNodeType_t}, @c false otherwise.
*/
virtual bool isRational () const;
/**
* Returns @c true if this node can represent a real number.
*
* More precisely, this node must be of one of the following types:
* @sbmlconstant{AST_REAL, ASTNodeType_t}, @sbmlconstant{AST_REAL_E,
* ASTNodeType_t} or @sbmlconstant{AST_RATIONAL, ASTNodeType_t}.
*
* @return @c true if the value of this ASTNode can represented as a real
* number, @c false otherwise.
*/
virtual bool isReal () const;
/**
* Returns @c true if this node is a MathML
* relational operator.
*
* The MathML relational operators are <code>==</code>, <code>>=</code>,
* <code>></code>, <code><</code>, and <code>!=</code>.
*
* @return @c true if this ASTNode is a MathML relational operator, @c
* false otherwise.
*/
virtual bool isRelational () const;
/**
* Predicate returning @c true if this node is a MathML
* semantics node.
*
* @return @c true if this ASTNode is a MathML semantics node, @c false
* otherwise.
*/
virtual bool isSemantics() const;
/**
* Returns @c true if this node represents a square root
* function.
*
* More precisely, the node type must be @sbmlconstant{AST_FUNCTION_ROOT,
* ASTNodeType_t} with two children, the first of which is an
* @sbmlconstant{AST_INTEGER, ASTNodeType_t} node having value equal to 2.
*
* @return @c true if the given ASTNode represents a <code>sqrt()</code>
* function, @c false otherwise.
*/
bool isSqrt () const;
/**
* Returns @c true if this node is a unary minus operator.
*
* A node is defined as a unary minus node if it is of type
* @sbmlconstant{AST_MINUS, ASTNodeType_t} and has exactly one child.
*
* For numbers, unary minus nodes can be "collapsed" by negating the
* number. In fact, @sbmlfunction{parseFormula, String} does this during
* its parsing process, and @sbmlfunction{parseL3Formula, String} has a
* configuration option that allows this behavior to be turned on or off.
* However, unary minus nodes for symbols (@sbmlconstant{AST_NAME,
* ASTNodeType_t}) cannot be "collapsed", so this predicate function is
* necessary.
*
* @return @c true if this ASTNode is a unary minus, @c false
* otherwise.
*
* @see @sbmlfunction{parseL3Formula, String}
*/
bool isUMinus () const;
/**
* Returns @c true if this node is a unary plus operator.
*
* A node is defined as a unary plus node if it is of type
* @sbmlconstant{AST_PLUS, ASTNodeType_t} and has exactly one child.
*
* @return @c true if this ASTNode is a unary plus, @c false otherwise.
*/
bool isUPlus () const;
/**
* Returns @c true if this node is of a certain type with a specific number
* of children.
*
* Designed for use in cases where it is useful to discover if the node is a
* unary not or unary minus, or a times node with no children, etc.
*
* @param type the type of ASTNode sought.
* @param numchildren the number of child nodes sought.
*
* @return @c true if this ASTNode is has the specified type and number of
* children, @c false otherwise.
*/
int hasTypeAndNumChildren(int type, unsigned int numchildren) const;
/**
* Returns @c true if this node has an unknown type.
*
* "Unknown" nodes have the type @sbmlconstant{AST_UNKNOWN, ASTNodeType_t}.
* Nodes with unknown types will not appear in an ASTNode tree returned by
* libSBML based upon valid SBML input; the only situation in which a node
* with type @sbmlconstant{AST_UNKNOWN, ASTNodeType_t} may appear is
* immediately after having create a new, untyped node using the ASTNode
* constructor. Callers creating nodes should endeavor to set the type to
* a valid node type as soon as possible after creating new nodes.
*
* @return @c true if this ASTNode is of type @sbmlconstant{AST_UNKNOWN,
* ASTNodeType_t}, @c false otherwise.
*/
virtual bool isUnknown() const;
/**
* Returns @c true if this node has a value for the MathML
* attribute @c id.
*
* @return true if this ASTNode has an attribute id, @c false
* otherwise.
*
* @see isSetClass()
* @see isSetStyle()
* @see setId(@if java const std::string& id@endif)
* @see unsetId()
*/
bool isSetId() const;
/**
* Returns @c true if this node has a value for the MathML
* attribute @c class.
*
* @return true if this ASTNode has an attribute class, @c false
* otherwise.
*
* @see isSetId()
* @see isSetStyle()
* @see @if java setClassName(const std::string& id)@else setClass()@endif@~
* @see unsetClass()
*/
bool isSetClass() const;
/**
* Returns @c true if this node has a value for the MathML
* attribute @c style.
*
* @return true if this ASTNode has an attribute style, @c false
* otherwise.
*
* @see isSetClass()
* @see isSetId()
* @see setStyle(@if java const std::string& id@endif)
* @see unsetStyle()
*/
bool isSetStyle() const;
/**
* Returns @c true if this node has the attribute
* <code>sbml:units</code>.
*
* @htmlinclude about-sbml-units-attrib.html
*
* @return @c true if this ASTNode has units associated with it, @c false
* otherwise.
*
* @note The <code>sbml:units</code> attribute is only available in SBML
* Level 3. It may not be used in Levels 1–2 of SBML.
*
* @see hasUnits()
* @see setUnits(@if java const std::string& units@endif)
*/
bool isSetUnits() const;
/**
* Returns @c true if this node or any of its
* children nodes have the attribute <code>sbml:units</code>.
*
* @htmlinclude about-sbml-units-attrib.html
*
* @return @c true if this ASTNode or its children has units associated
* with it, @c false otherwise.
*
* @note The <code>sbml:units</code> attribute is only available in SBML
* Level 3. It may not be used in Levels 1–2 of SBML.
*
* @see isSetUnits()
* @see setUnits(@if java const std::string& units@endif)
*/
bool hasUnits() const;
/**
* Sets the value of this ASTNode to the given character. If character
* is one of @c +, @c -, <code>*</code>, <code>/</code> or @c ^, the node
* type will be set accordingly. For all other characters, the node type
* will be set to @sbmlconstant{AST_UNKNOWN, ASTNodeType_t}.
*
* @param value the character value to which the node's value should be
* set.
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
*/
int setCharacter(char value);
/**
* Sets the MathML attribute @c id of this ASTNode.
*
* @param id @c string representing the identifier.
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
*
* @see isSetId()
* @see getId()
* @see unsetId()
*/
int setId(const std::string& id);
/**
* Sets the MathML attribute @c class of this ASTNode.
*
* @param className @c string representing the MathML class for this node.
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
*
* @if java
* @note In the API interfaces for languages other than Java, this method
* is named <code>setClass()</code>, but in Java it is renamed
* <code>setClassName()</code> to avoid a name collision with Java's
* standard object method of the same name.
* @endif@~
*
* @see isSetClass()
* @see getClass()
* @see unsetClass()
*/
int setClass(const std::string& className);
/**
* Sets the MathML attribute @c style of this ASTNode.
*
* @param style @c string representing the identifier.
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
*
* @see isSetStyle()
* @see getStyle()
* @see unsetStyle()
*/
int setStyle(const std::string& style);
/**
* Sets the value of this ASTNode to the given name.
*
* As a side effect, this ASTNode object's type will be reset to
* @sbmlconstant{AST_NAME, ASTNodeType_t} if (and <em>only if</em>) the
* ASTNode was previously an operator (i.e., @if clike isOperator()@else
* ASTNode::isOperator()@endif@~ returns @c true), number (i.e., @if clike
* isNumber()@else ASTNode::isNumber()@endif@~ returns @c true), or
* unknown. This allows names to be set for @sbmlconstant{AST_FUNCTION,
* ASTNodeType_t} nodes and the like.
*
* @param name the string containing the name to which this node's value
* should be set.
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
*/
int setName(const char* name);
/**
* Sets the value of this ASTNode to the given integer
*
* As a side effect, this operation sets the node type to
* @sbmlconstant{AST_INTEGER, ASTNodeType_t}.
*
* @param value the integer to which this node's value should be set.
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
*/
int setValue(int value);
/**
* Sets the value of this ASTNode to the given (@c long) integer
*
* As a side effect, this operation sets the node type to
* @sbmlconstant{AST_INTEGER, ASTNodeType_t}.
*
* @param value the integer to which this node's value should be set.
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
*/
int setValue(long value);
/**
* Sets the value of this ASTNode to the given rational.
*
* As a side effect, this operation sets the node type to
* @sbmlconstant{AST_RATIONAL, ASTNodeType_t}.
*
* @param numerator the numerator value of the rational.
* @param denominator the denominator value of the rational.
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
*/
int setValue(long numerator, long denominator);
/**
* Sets the value of this ASTNode to the given real (@c double).
*
* As a side effect, this operation sets the node type to
* @sbmlconstant{AST_REAL, ASTNodeType_t}.
*
* This is functionally equivalent to:
* @verbatim
setValue(value, 0);
@endverbatim
*
* @param value the @c double format number to which this node's value
* should be set.
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
*/
int setValue(double value);
/**
* Sets the value of this ASTNode to the given real (@c double)
*
* As a side effet, this operation sets the node type to
* @sbmlconstant{AST_REAL_E, ASTNodeType_t}.
*
* @param mantissa the mantissa of this node's real-numbered value.
* @param exponent the exponent of this node's real-numbered value.
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
*/
int setValue(double mantissa, long exponent);
/**
* Sets the type of this ASTNode to the given type code.
*
* @param type the type to which this node should be set.
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_INVALID_ATTRIBUTE_VALUE, OperationReturnValues_t}
*
* @note A side-effect of doing this is that any numerical values
* previously stored in this node are reset to zero.
*
* @see getType()
* @see setType(int Type)
*/
int setType (ASTNodeType_t type);
/**
* Sets the type of this ASTNode.
*
* This uses integer type codes, which may come from @if clike the
* enumeration #ASTNodeType_t@else the set
* of static integer constants whose names begin with the prefix
* <code>AST_</code> @endif @if java defined in the interface class
* <code><a href="libsbmlConstants.html">libsbmlConstants</a></code>
* @endif@if python defined in the interface class @link libsbml
* libsbml@endlink@endif@~ or an enumeration of AST types in an SBML
* Level 3 package.
*
* @param type the integer representing the type to which this node should
* be set.
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_INVALID_ATTRIBUTE_VALUE, OperationReturnValues_t}
*
* @note A side-effect of doing this is that any numerical values
* previously stored in this node are reset to zero.
*
* @see getType()
* @see setType(@if java int@else ASTNodeType_t type@endif)
*/
int setType (int type);
/**
* Sets the units of this ASTNode to units.
*
* The units will be set @em only if this ASTNode object represents a
* MathML <code><cn></code> element, i.e., represents a number.
* Callers may use
* @if clike isNumber()@else ASTNode::isNumber()@endif@~
* to inquire whether the node is of that type.
*
* @htmlinclude about-sbml-units-attrib.html
*
* @param units @c string representing the unit identifier.
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_UNEXPECTED_ATTRIBUTE, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_INVALID_ATTRIBUTE_VALUE, OperationReturnValues_t}
*
* @note The <code>sbml:units</code> attribute is only available in SBML
* Level 3. It may not be used in Levels 1–2 of SBML.
*
* @see isSetUnits()
* @see hasUnits()
*/
int setUnits(const std::string& units);
/**
* Swaps the children of this node with the children of another node.
*
* @param that the other node whose children should be used to replace
* <em>this</em> node's children.
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_OPERATION_FAILED, OperationReturnValues_t}
*/
int swapChildren(ASTNode* that);
/**
* Renames all the SIdRef attributes on this node and its child nodes.
*
* @param oldid the old identifier.
* @param newid the new identifier.
*/
virtual void renameSIdRefs(const std::string& oldid, const std::string& newid);
/**
* Renames all the UnitSIdRef attributes on this node and its child nodes.
*
* The only place UnitSIDRefs appear in MathML <code><cn></code>
* elements, so the effects of this method are limited to that.
*
* @param oldid the old identifier.
* @param newid the new identifier.
*/
virtual void renameUnitSIdRefs(const std::string& oldid, const std::string& newid);
/** @cond doxygenLibsbmlInternal */
/**
* Replace any nodes of type AST_NAME with the name 'id' from the child
* 'math' object with the provided ASTNode.
*
*/
virtual void replaceIDWithFunction(const std::string& id, const ASTNode* function);
/** @endcond */
/** @cond doxygenLibsbmlInternal */
/**
* Replaces any 'AST_NAME_TIME' nodes with a node that multiplies time by
* the given function.
*
*/
//virtual void multiplyTimeBy(const ASTNode* function);
/** @endcond */
/** @cond doxygenLibsbmlInternal */
virtual void setIsChildFlag(bool flag);
/** @endcond */
/**
* Unsets the units of this ASTNode.
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_UNEXPECTED_ATTRIBUTE, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_OPERATION_FAILED, OperationReturnValues_t}
*/
int unsetUnits();
/**
* Unsets the MathML @c id attribute of this ASTNode.
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_OPERATION_FAILED, OperationReturnValues_t}
*/
int unsetId();
/**
* Unsets the MathML @c class attribute of this ASTNode.
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_OPERATION_FAILED, OperationReturnValues_t}
*/
int unsetClass();
/**
* Unsets the MathML @c style attribute of this ASTNode.
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_OPERATION_FAILED, OperationReturnValues_t}
*/
int unsetStyle();
/**
* Sets the MathML attribute @c definitionURL.
*
* @param url the URL value for the @c definitionURL attribute.
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_INVALID_OBJECT, OperationReturnValues_t}
*
* @see setDefinitionURL(const std::string& url)
* @see getDefinitionURL()
* @see getDefinitionURLString()
*/
int setDefinitionURL(XMLAttributes url);
/**
* Sets the MathML attribute @c definitionURL.
*
* @param url the URL value for the @c definitionURL attribute.
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_INVALID_OBJECT, OperationReturnValues_t}
*
* @see setDefinitionURL(XMLAttributes url)
* @see getDefinitionURL()
* @see getDefinitionURLString()
*/
int setDefinitionURL(const std::string& url);
/**
* Returns the MathML @c definitionURL attribute value.
*
* @return the value of the @c definitionURL attribute, in the form of
* a libSBML XMLAttributes object.
*
* @see setDefinitionURL(XMLAttributes url)
* @see setDefinitionURL(const std::string& url)
* @see getDefinitionURLString()
*/
XMLAttributes* getDefinitionURL() const;
/**
* Replaces occurrences of a given name with a given ASTNode.
*
* For example, if the formula in this ASTNode is <code>x + y</code>,
* then the <code><bvar></code> is @c x and @c arg is an ASTNode
* representing the real value @c 3. This method substitutes @c 3 for @c
* x within this ASTNode object.
*
* @param bvar a string representing the variable name to be substituted.
*
* @param arg an ASTNode representing the name/value/formula to use as
* a replacement.
*/
void replaceArgument(const std::string& bvar, ASTNode *arg);
/**
* Sets the parent SBML object.
*
* @param sb the parent SBML object of this ASTNode.
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_OPERATION_FAILED, OperationReturnValues_t}
*
* @see isSetParentSBMLObject()
* @see getParentSBMLObject()
*/
int setParentSBMLObject(SBase* sb);
/**
* Returns the parent SBML object.
*
* @return the parent SBML object of this ASTNode.
*
* @see isSetParentSBMLObject()
* @if clike @see setParentSBMLObject()@endif@~
*/
SBase * getParentSBMLObject() const;
/**
* Unsets the parent SBML object.
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_OPERATION_FAILED, OperationReturnValues_t}
*
* @see isSetParentSBMLObject()
* @see getParentSBMLObject()
*/
int unsetParentSBMLObject();
/**
* Returns @c true if this node has a value for the parent SBML
* object.
*
* @return true if this ASTNode has an parent SBML object set, @c false otherwise.
*
* @see getParentSBMLObject()
* @if clike @see setParentSBMLObject()@endif@~
*/
bool isSetParentSBMLObject() const;
/**
* Reduces this ASTNode to a binary tree.
*
* Example: if this ASTNode is <code>and(x, y, z)</code>, then the
* formula of the reduced node is <code>and(and(x, y), z)</code>. The
* operation replaces the formula stored in the current ASTNode object.
*/
void reduceToBinary();
/**
* Sets the user data of this node.
*
* The user data can be used by the application developer to attach custom
* information to the node. In case of a deep copy, this attribute will
* passed as it is. The attribute will be never interpreted by this class.
*
* @param userData specifies the new user data.
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_OPERATION_FAILED, OperationReturnValues_t}
*
* @if clike
* @see ASTNode::isSetUserData()
* @see ASTNode::getUserData()
* @see ASTNode::unsetUserData()
* @endif
*/
int setUserData(void *userData);
/**
* Returns the user data that has been previously set via setUserData().
*
* @return the user data of this node, or @c NULL if no user data has been
* set.
*
* @if clike
* @see ASTNode::isSetUserData()
* @see ASTNode::setUserData()
* @see ASTNode::unsetUserData()
* @endif@~
*/
void *getUserData() const;
/**
* Unsets the user data of this node.
*
* The user data can be used by the application developer to attach custom
* information to the node. In case of a deep copy, this attribute will
* passed as it is. The attribute will be never interpreted by this class.
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_OPERATION_FAILED, OperationReturnValues_t}
*
* @if clike
* @see ASTNode::setUserData()
* @see ASTNode::getUserData()
* @see ASTNode::isSetUserData()
* @endif@~
*/
int unsetUserData();
/**
* Returns @c true if this node has a user data object.
*
* @return true if this ASTNode has a user data object set, @c false
* otherwise.
*
* @if clike
* @see ASTNode::setUserData()
* @see ASTNode::getUserData()
* @see ASTNode::unsetUserData()
* @endif@~
*/
bool isSetUserData() const;
/**
* Returns @c true or @c false depending on whether this
* ASTNode is well-formed.
*
* @note An ASTNode may be well-formed, with each node and its children
* having the appropriate number of children for the given type, but may
* still be invalid in the context of its use within an SBML model.
*
* @return @c true if this ASTNode is well-formed, @c false otherwise.
*
* @see hasCorrectNumberArguments()
*/
bool isWellFormedASTNode() const;
/**
* Returns @c true if this ASTNode has the correct number of children for
* its type.
*
* For example, an ASTNode with type @sbmlconstant{AST_PLUS, ASTNodeType_t}
* expects 2 child nodes.
*
* @return @c true if this ASTNode has the appropriate number of children
* for its type, @c false otherwise.
*
* @note This function performs a check on the top-level node only. Child
* nodes are not checked.
*
* @see isWellFormedASTNode()
*/
bool hasCorrectNumberArguments() const;
/* additional to original AST */
/**
* Returns the MathML @c definitionURL attribute value as a string.
*
* @return the value of the @c definitionURL attribute, as a string.
*
* @see getDefinitionURL()
* @see setDefinitionURL(const std::string& url)
* @see setDefinitionURL(XMLAttributes url)
*/
std::string getDefinitionURLString() const;
/** @cond doxygenLibsbmlInternal */
virtual bool representsBvar() const;
/** @endcond */
/** @cond doxygenLibsbmlInternal */
/*
* writes the node to the stream
*/
virtual void write(XMLOutputStream& stream) const;
/** @endcond */
/** @cond doxygenLibsbmlInternal */
/*
* reads the node from the stream
*/
virtual bool read(XMLInputStream& stream, const std::string& reqd_prefix="");
/** @endcond */
/** @cond doxygenLibsbmlInternal */
virtual void writeNodeOfType(XMLOutputStream& stream, int type,
bool inChildNode = false) const;
/** @endcond */
/** @cond doxygenLibsbmlInternal */
unsigned int getNumBvars() const;
/** @endcond */
/** @cond doxygenLibsbmlInternal */
virtual int getTypeCode () const;
/** @endcond */
/** @cond doxygenLibsbmlInternal */
virtual const std::string& getPackageName () const;
/** @endcond */
/** @cond doxygenLibsbmlInternal */
virtual ASTBasePlugin* getPlugin(const std::string& package);
virtual const ASTBasePlugin* getPlugin(const std::string& package) const;
virtual ASTBasePlugin* getPlugin(unsigned int n);
virtual const ASTBasePlugin* getPlugin(unsigned int n) const;
/** @endcond */
/** @cond doxygenLibsbmlInternal */
unsigned int getNumPiece () const;
/** @endcond */
protected:
/** @cond doxygenLibsbmlInternal */
ASTNumber * mNumber;
ASTFunction * mFunction;
/* put this here for historical purposes */
char mChar;
std::string mHistoricalName;
bool containsVariable(const std::string id) const;
unsigned int getNumVariablesWithUndeclaredUnits(Model * m = NULL) const;
friend class UnitFormulaFormatter;
friend class ASTFunctionBase;
/**
* Internal helper function for canonicalize().
*/
bool canonicalizeConstant ();
bool canonicalizeFunction ();
bool canonicalizeFunctionL1 ();
bool canonicalizeLogical ();
bool canonicalizeRelational ();
friend class MathML;
/* additional to original astnode */
bool hasCnUnits() const;
const std::string& getUnitsPrefix() const;
/* constructors for wrapping a number or a function node into
* a newASTNode
*/
ASTNode(ASTNumber* number);
ASTNode(ASTFunction* function);
void reset();
void connectPlugins();
/** @endcond */
/** @cond doxygenLibsbmlInternal */
/*
* return the number member variable
*/
virtual ASTNumber * getNumber() const;
/** @endcond */
/** @cond doxygenLibsbmlInternal */
/*
* return the function member variable
*/
virtual ASTFunction * getFunction() const;
/** @endcond */
friend class ASTSemanticsNode;
};
LIBSBML_CPP_NAMESPACE_END
#endif /* __cplusplus */
#ifndef SWIG
LIBSBML_CPP_NAMESPACE_BEGIN
BEGIN_C_DECLS
/**
* Creates a new ASTNode_t structure and returns a pointer to it.
*
* The returned node will have a type of @c AST_UNKNOWN. The caller should
* be set the node type to something else as soon as possible using
* ASTNode_setType().
*
* @returns a pointer to the fresh ASTNode_t structure.
*
* @see ASTNode_createWithType()
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
ASTNode_t *
ASTNode_create (void);
/**
* Creates a new ASTNode_t structure and sets its type.
*
* @param type the type of node to create
*
* @returns a pointer to the fresh ASTNode_t structure.
*
* @see ASTNode_create()
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
ASTNode_t *
ASTNode_createWithType (ASTNodeType_t type);
/**
* Creates a new ASTNode_t structure from the given Token_t data and returns
* a pointer to it.
*
* The returned ASTNode_t structure will contain the same data as the Token_t
* structure. The Token_t structure is used to store a token returned by
* FormulaTokenizer_nextToken(). It contains a union whose members can store
* different types of tokens, such as numbers and symbols.
*
* @param token the Token_t structure to use
*
* @returns a pointer to the new ASTNode_t structure.
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
ASTNode_t *
ASTNode_createFromToken (Token_t *token);
/**
* Frees the given ASTNode_t structure, including any child nodes.
*
* @param node the node to be freed.
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
void
ASTNode_free (ASTNode_t *node);
/**
* Frees the name field of a given node and sets it to null.
*
* This operation is only applicable to ASTNode_t structures corresponding to
* operators, numbers, or @sbmlconstant{AST_UNKNOWN, ASTNodeType_t}. This
* method will have no effect on other types of nodes.
*
* @param node the node whose name field should be freed.
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_INVALID_OBJECT, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_UNEXPECTED_ATTRIBUTE, OperationReturnValues_t}
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_freeName (ASTNode_t *node);
/**
* Converts a given node to a canonical form and returns @c 1 if successful,
* @c 0 otherwise.
*
* The rules determining the canonical form conversion are as follows:
*
* @li If the node type is @sbmlconstant{AST_NAME, ASTNodeType_t}
* and the node name matches @c "ExponentialE", @c "Pi", @c "True" or @c
* "False" the node type is converted to the corresponding
* <code>AST_CONSTANT_</code><em><span class="placeholder">X</span></em> type.
* @li If the node type is an @sbmlconstant{AST_FUNCTION, ASTNodeType_t} and
* the node name matches an SBML (MathML) function name, logical operator
* name, or relational operator name, the node is converted to the
* corresponding <code>AST_FUNCTION_</code><em><span
* class="placeholder">X</span></em> or <code>AST_LOGICAL_</code><em><span
* class="placeholder">X</span></em> type.
*
* SBML Level 1 function names are searched first; thus, for example,
* canonicalizing @c log will result in a node type of
* @sbmlconstant{AST_FUNCTION_LN, ASTNodeType_t}. (See the SBML Level 1
* Version 2 Specification, Appendix C.)
*
* Sometimes, canonicalization of a node results in a structural
* conversion of the node as a result of adding a child. For example, a
* node with the SBML Level 1 function name @c sqr and a single
* child node (the argument) will be transformed to a node of type
* @sbmlconstant{AST_FUNCTION_POWER, ASTNodeType_t} with
* two children. The first child will remain unchanged, but the second child
* will be an ASTNode_t of type @sbmlconstant{AST_INTEGER, ASTNodeType_t} and
* a value of 2. The function names that result in structural changes are:
* @c log10, @c sqr, and @c sqrt.
*
* @param node the node to be converted.
*
* @returns @c 1 if successful, @c 0 otherwise.
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_canonicalize (ASTNode_t *node);
/**
* Adds a node as a child of another node.
*
* Child nodes are added in order from "left-to-right".
*
* @param node the node which will get the new child node
* @param disownedChild the ASTNode_t instance to add
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_INVALID_OBJECT, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_OPERATION_FAILED, OperationReturnValues_t}
*
* @copydetails doc_warning_modifying_structure
*
* @see ASTNode_prependChild()
* @see ASTNode_replaceChild()
* @see ASTNode_insertChild()
* @see ASTNode_removeChild()
* @see ASTNode_isWellFormedASTNode()
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_addChild (ASTNode_t *node, ASTNode_t *disownedChild);
/**
* Adds a node as a child of another node.
*
* This method adds child nodes from right to left.
*
* @param node the node that will receive the given child node.
* @param disownedChild the ASTNode_t instance to add.
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_INVALID_OBJECT, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_OPERATION_FAILED, OperationReturnValues_t}
*
* @copydetails doc_warning_modifying_structure
*
* @see ASTNode_addChild()
* @see ASTNode_replaceChild()
* @see ASTNode_insertChild()
* @see ASTNode_removeChild()
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_prependChild (ASTNode_t *node, ASTNode_t *disownedChild);
/**
* Removes the nth child of a given node.
*
* @param node the node whose child element is to be removed.
* @param n unsigned int the index of the child to remove.
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_INDEX_EXCEEDS_SIZE, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_INVALID_OBJECT, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
*
* @copydetails doc_warning_modifying_structure
*
* @see ASTNode_addChild()
* @see ASTNode_prependChild()
* @see ASTNode_replaceChild()
* @see ASTNode_insertChild()
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_removeChild(ASTNode_t* node, unsigned int n);
/**
* Replaces but does not delete the nth child of a given node.
*
* @param node the ASTNode_t node to modify
* @param n unsigned int the index of the child to replace
* @param disownedChild ASTNode_t structure to replace the nth child
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_INDEX_EXCEEDS_SIZE, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_INVALID_OBJECT, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
*
* @copydetails doc_warning_modifying_structure
*
* @see ASTNode_addChild()
* @see ASTNode_prependChild()
* @see ASTNode_insertChild()
* @see ASTNode_removeChild()
* @see ASTNode_replaceAndDeleteChild()
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_replaceChild(ASTNode_t* node, unsigned int n, ASTNode_t * disownedChild);
/**
* Replaces and deletes the nth child of a given node.
*
* @param node the ASTNode_t node to modify
* @param n unsigned int the index of the child to replace
* @param disownedChild ASTNode_t structure to replace the nth child
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_INDEX_EXCEEDS_SIZE, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_INVALID_OBJECT, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
*
* @copydetails doc_warning_modifying_structure
*
* @see ASTNode_addChild()
* @see ASTNode_prependChild()
* @see ASTNode_insertChild()
* @see ASTNode_removeChild()
* @see ASTNode_replaceChild()
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_replaceAndDeleteChild(ASTNode_t* node, unsigned int n, ASTNode_t * disownedChild);
/**
* Insert a new child node at a given point in the list of children of a
* node.
*
* @param node the ASTNode_t structure to modify.
* @param n unsigned int the index of the location where the @p disownedChild is
* to be added.
* @param disownedChild ASTNode_t structure to insert as the nth child.
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_INDEX_EXCEEDS_SIZE, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_INVALID_OBJECT, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
*
* @copydetails doc_warning_modifying_structure
*
* @see ASTNode_addChild()
* @see ASTNode_prependChild()
* @see ASTNode_replaceChild()
* @see ASTNode_removeChild()
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_insertChild(ASTNode_t* node, unsigned int n, ASTNode_t * disownedChild);
/**
* Creates a recursive copy of a node and all its children.
*
* @param node the ASTNode_t structure to copy.
*
* @return a copy of this ASTNode_t structure and all its children. The
* caller owns the returned structure and is reponsible for deleting it.
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
ASTNode_t *
ASTNode_deepCopy (const ASTNode_t *node);
/**
* Returns a child of a node according to its index number.
*
* @param node the node whose child should be obtained.
* @param n the index of the desired child node.
*
* @return the nth child of this ASTNode_t or a null pointer if this node has
* no nth child (<code>n > </code> ASTNode_getNumChildre() <code>- 1</code>).
*
* @see ASTNode_getNumChildren()
* @see ASTNode_getLeftChild()
* @see ASTNode_getRightChild()
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
ASTNode_t *
ASTNode_getChild (const ASTNode_t *node, unsigned int n);
/**
* Returns the left-most child of a given node.
*
* This is equivalent to <code>ASTNode_getChild(node, 0)</code>.
*
* @param node the node whose child is to be returned.
*
* @return the left child, or a null pointer if there are no children.
*
* @see ASTNode_getNumChildren()
* @see ASTNode_getChild()
* @see ASTNode_getRightChild()
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
ASTNode_t *
ASTNode_getLeftChild (const ASTNode_t *node);
/**
* Returns the right-most child of a given node.
*
* If <code>ASTNode_getNumChildren(node) > 1</code>, then this is equivalent
* to:
* @verbatim
ASTNode_getChild(node, ASTNode_getNumChildren(node) - 1);
@endverbatim
*
* @param node the node whose child node is to be obtained.
*
* @return the right child of @p node, or a null pointer if @p node has no
* right child.
*
* @see ASTNode_getNumChildren()
* @see ASTNode_getLeftChild()
* @see ASTNode_getChild()
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
ASTNode_t *
ASTNode_getRightChild (const ASTNode_t *node);
/**
* Returns the number of children of a given node.
*
* @param node the ASTNode_t structure whose children are to be counted.
*
* @return the number of children of @p node, or @c 0 is it has no children.
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
unsigned int
ASTNode_getNumChildren (const ASTNode_t *node);
/**
* Returns a list of nodes rooted at a given node and satisfying a given
* predicate.
*
* This function performs a depth-first search of the tree rooted at the
* given ASTNode_t structure, and returns a List_t structure of nodes for
* which the given function <code>predicate(node)</code> returns true (i.e.,
* nonzero).
*
* The predicate is passed in as a pointer to a function. The function
* definition must have the type @sbmlconstant{AST_PLUS, ASTNode.h::ASTNodePredicate
* ASTNodePredicate@endlink, which is defined as
* @code{.c}
int (*ASTNodePredicate) (const ASTNode_t *node);
@endcode
* where a return value of nonzero represents true and zero
* represents false.
*
* @param node the node at which the search is to be started
* @param predicate the predicate to use
*
* @return the list of nodes for which the predicate returned true (i.e.,
* nonzero). The List_t structure returned is owned by the caller and
* should be deleted after the caller is done using it. The ASTNode_t
* structures in the list, however, are @em not owned by the caller (as they
* still belong to the tree itself), and therefore should @em not be deleted.
*
* @see ASTNode_fillListOfNodes()
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
List_t *
ASTNode_getListOfNodes (const ASTNode_t *node, ASTNodePredicate predicate);
/**
* Returns a list of nodes rooted at a given node and satisfying a given
* predicate.
*
* This method is identical to ASTNode_getListOfNodes(), except that instead
* of creating a new List_t structure, it uses the one passed in as argument
* @p lst. This function performs a depth-first search of the tree rooted at
* the given ASTNode_t structure, and adds to @p lst the nodes for which the
* given function <code>predicate(node)</code> returns true (i.e., nonzero).
*
* The predicate is passed in as a pointer to a function. The function
* definition must have the type @link ASTNode.h::ASTNodePredicate
* ASTNodePredicate@endlink, which is defined as
* @code{.c}
int (*ASTNodePredicate) (const ASTNode_t *node);
@endcode
* where a return value of nonzero represents true and zero
* represents false.
*
* @param node the node at which the search is to be started
* @param predicate the predicate to use
* @param lst the list to use
*
* @see ASTNode_getListOfNodes()
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
void
ASTNode_fillListOfNodes ( const ASTNode_t *node,
ASTNodePredicate predicate,
List_t *lst );
/**
* Returns the value of a node as a single character.
*
* This function should be called only when ASTNode_getType() returns
* @sbmlconstant{AST_PLUS, ASTNodeType_t},
* @sbmlconstant{AST_MINUS, ASTNodeType_t},
* @sbmlconstant{AST_TIMES, ASTNodeType_t},
* @sbmlconstant{AST_DIVIDE, ASTNodeType_t} or
* @sbmlconstant{AST_POWER, ASTNodeType_t} for the given
* @p node.
*
* @param node the node whose value is to be returned.
*
* @return the value of @p node as a single character, or the value @c
* CHAR_MAX if @p is null.
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
char
ASTNode_getCharacter (const ASTNode_t *node);
/**
* Returns the value of a node as an integer.
*
* This function should be called only when ASTNode_getType() returns
* @sbmlconstant{AST_INTEGER, ASTNodeType_t} for the given @p node.
*
* @param node the node whose value is to be returned.
*
* @return the value of the given ASTNode_t structure as a
* (<code>long</code>) integer, or the value @c LONG_MAX if @p is null.
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
long
ASTNode_getInteger (const ASTNode_t *node);
/**
* Returns the value of a node as a string.
*
* This function may be called on nodes that (1) are not operators, i.e.,
* nodes for which ASTNode_isOperator() returns false (@c 0), and (2) are not
* numbers, i.e., for which ASTNode_isNumber() also returns false (@c 0).
*
* @param node the node whose value is to be returned.
*
* @return the value of @p node as a string, or a null pointer if @p is null.
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
const char *
ASTNode_getName (const ASTNode_t *node);
/**
* Returns the numerator value of a node representing a rational number.
*
* This function should be called only when ASTNode_getType() returns
* @sbmlconstant{AST_RATIONAL, ASTNodeType_t} for the given @p node.
*
* @param node the node whose value is to be returned.
* @return the value of the numerator of @p node, or the value @c LONG_MAX if
* @p is null.
*
* @see ASTNode_getDenominator()
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
long
ASTNode_getNumerator (const ASTNode_t *node);
/**
* Returns the numerator value of a node representing a rational number.
*
* This function should be called only when ASTNode_getType() returns
* @sbmlconstant{AST_RATIONAL, ASTNodeType_t} for the given @p node.
*
* @param node the node whose value is to be returned.
*
* @return the value of the denominator of @p node, or the value @c LONG_MAX
* if @p is null.
*
* @see ASTNode_getNumerator()
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
long
ASTNode_getDenominator (const ASTNode_t *node);
/**
* Get the real-numbered value of a node.
*
* This function should be called only when ASTNode_isReal() returns nonzero
* for @p node. This function performs the necessary arithmetic if the node
* type is @sbmlconstant{AST_REAL_E, ASTNodeType_t} (<em>mantissa * 10<sup>
* exponent</sup></em>) or @sbmlconstant{AST_RATIONAL, ASTNodeType_t}
* (<em>numerator / denominator</em>).
*
* @param node the node whose value is to be returned.
*
* @return the value of @p node as a real (double), or NaN if @p
* is null.
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
double
ASTNode_getReal (const ASTNode_t *node);
/**
* Get the mantissa value of a node.
*
* This function should be called only when ASTNode_getType() returns
* @sbmlconstant{AST_REAL_E, ASTNodeType_t} or
* @sbmlconstant{AST_REAL, ASTNodeType_t} for the given @p node. If
* ASTNode_getType() returns @sbmlconstant{AST_REAL, ASTNodeType_t} for @p
* node, this method behaves identically to ASTNode_getReal().
*
* @param node the node whose value is to be returned.
*
* @return the value of the mantissa of @p node, or NaN if @p is null.
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
double
ASTNode_getMantissa (const ASTNode_t *node);
/**
* Get the exponent value of a node.
*
* This function should be called only when ASTNode_getType() returns
* @sbmlconstant{AST_REAL_E, ASTNodeType_t} or @sbmlconstant{AST_REAL,
* ASTNodeType_t} for the given @p node.
*
* @param node the node whose value is to be returned.
*
* @return the value of the exponent field in the given @p node ASTNode_t
* structure, or NaN if @p is null.
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
long
ASTNode_getExponent (const ASTNode_t *node);
/**
* Returns the numerical value of this ASTNode_t.
*
* @param node the ASTNode_t whose value is to be returned.
*
* @return the numerical value of this ASTNode_t, or @c NaN if this
* is not a type of node that has a numerical value.
*
* @note This function will return a numerical value (as a double) for
* any ASTNode_t that represents a number, a constant such as pi or
* avogadro or @c 1 for nodes of type
* @sbmlconstant{AST_CONSTANT_TRUE, ASTNodeType_t} and @c 0 for nodes of type
* @sbmlconstant{AST_CONSTANT_FALSE, ASTNodeType_t}. It does not evaluate
* the node in any way so, for example, it will not return the value of
* a named ASTNode_t or attempt to evaluate a function.
* This includes a node representing @c time i.e. nodes
* of type @sbmlconstant{AST_NAME_TIME, ASTNodeType_t}.
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
double
ASTNode_getValue(const ASTNode_t *node);
/**
* Returns the precedence of a node in the infix math syntax of SBML
* Level 1.
*
* @copydetails doc_summary_of_string_math
*
* @param node the node whose precedence is to be calculated.
*
* @return the precedence of @p node (as defined in the SBML Level 1
* specification).
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_getPrecedence (const ASTNode_t *node);
/**
* Returns the type of the given node.
*
* @param node the node
*
* @return the type of the given ASTNode_t structure.
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
ASTNodeType_t
ASTNode_getType (const ASTNode_t *node);
/**
* Returns the MathML @c id attribute of a given node.
*
* @param node the node whose identifier should be returned
*
* @returns the identifier of the node, or null if @p is a null pointer.
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
char *
ASTNode_getId(const ASTNode_t * node);
/**
* Returns the MathML @c class attribute of a given node.
*
* @param node the node whose class should be returned
*
* @returns the class identifier, or null if @p is a null pointer.
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
char *
ASTNode_getClass(const ASTNode_t * node);
/**
* Returns the MathML @c style attribute of a given node.
*
* @param node the node
*
* @return a string representing the @c style value, or a null value if @p is
* a null pointer.
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
char *
ASTNode_getStyle(const ASTNode_t * node);
/**
* Returns the SBML "units" attribute of a given node.
*
* @htmlinclude about-sbml-units-attrib.html
*
* @param node the node whose units are to be returned.
*
* @return the units, as a string, or a null value if @p is a null pointer.
*
* @note The <code>sbml:units</code> attribute for MathML expressions is only
* defined in SBML Level 3. It may not be used in Levels 1–2 of
* SBML.
*
* @see SBML_parseL3Formula()
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
char *
ASTNode_getUnits(const ASTNode_t * node);
/**
* Returns true if the given node represents the special symbol @c avogadro.
*
* @param node the node to query
*
* @return @c 1 if this stands for @c avogadro, @c 0 otherwise.
*
* @see SBML_parseL3Formula()
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_isAvogadro (const ASTNode_t * node);
/**
* Returns true if this node is some type of Boolean value or operator.
*
* @param node the node in question
*
* @return @c 1 (true) if @p node is a Boolean (a logical operator, a
* relational operator, or the constants @c true or @c false), @c 0
* otherwise.
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_isBoolean (const ASTNode_t * node);
/**
* Returns true if the given node is something that returns a Boolean value.
*
* This function looks at the whole ASTNode_t structure rather than just the
* top level of @p node. Thus, it will consider return values from MathML @c
* piecewise statements. In addition, if the ASTNode_t structure in @p node
* uses a function call, this function will examine the return value of the
* function. Note that this is only possible in cases the ASTNode_t
* structure can trace its parent Model_t structure; that is, the ASTNode_t
* structure must represent the <code><math></code> element of some
* SBML object that has already been added to an instance of an
* SBMLDocument_t structure.
*
* @param node the node to query
*
* @return @c 1 if @p node returns a boolean, @c 0 otherwise.
*
* @see ASTNode_isBoolean()
* @see ASTNode_returnsBooleanForModel()
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_returnsBoolean (const ASTNode_t *node);
/**
* Returns true if the given node is something that returns a Boolean value.
*
* This function looks at the whole ASTNode_t structure rather than just the
* top level of @p node. Thus, it will consider return values from MathML @c
* piecewise statements. In addition, if the ASTNode_t structure in @p node
* uses a function call, this function will examine the return value of the
* function using the definition of the function found in the given Model_t
* structure given by @p model (rather than the model that might be traced
* from @p node itself). This function is similar to
* ASTNode_returnsBoolean(), but is useful in situations where the ASTNode_t
* structure has not been hooked into a model yet.
*
* @param node the node to query
* @param model the model to use as the basis for finding the definition
* of the function
*
* @return @c 1 if @p node returns a boolean, @c 0 otherwise.
*
* @see ASTNode_isBoolean()
* @see ASTNode_returnsBoolean()
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_returnsBooleanForModel (const ASTNode_t *node, const Model_t* model);
/**
* Returns true if the given node represents a MathML constant.
*
* Examples of constants in this context are @c Pi, @c true, etc.
*
* @param node the node
*
* @return @c 1 if @p node is a MathML constant, @c 0 otherwise.
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_isConstant (const ASTNode_t * node);
/**
* Returns true if the given node represents a function.
*
* @param node the node
*
* @return @c 1 if @p node is a function in SBML, whether predefined (in SBML
* Level 1), defined by MathML (SBML Levels 2–3) or
* user-defined.
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_isFunction (const ASTNode_t * node);
/**
* Returns true if the given node stands for infinity.
*
* @param node the node to query
*
* @return @c 1 if @p node is the special IEEE 754 value for infinity, @c 0
* otherwise.
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_isInfinity (const ASTNode_t *node);
/**
* Returns true if the given node contains an integer value.
*
* @param node the node to query
*
* @return @c 1 if @p node is of type
* @sbmlconstant{AST_INTEGER, ASTNodeType_t}, @c 0 otherwise.
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_isInteger (const ASTNode_t *node);
/**
* Returns true if the given node is a MathML lambda function.
*
* @param node the node to query
*
* @return @c 1 if @p node is of type
* @sbmlconstant{AST_LAMBDA, ASTNodeType_t}, @c 0 otherwise.
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_isLambda (const ASTNode_t *node);
/**
* Returns true if the given node represents the log base-10 function.
*
* More precisely, this function tests if the given @p node's type is
* @sbmlconstant{AST_FUNCTION_LOG, ASTNodeType_t} with two children, the
* first of which is an @sbmlconstant{AST_INTEGER, ASTNodeType_t} equal to @c
* 10.
*
* @return @c 1 if @p node represents a @c log10() function, @c 0
* otherwise.
*
* @see SBML_parseL3Formula()
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_isLog10 (const ASTNode_t *node);
/**
* Returns true if the given node is a logical operator.
*
* @param node the node to query
*
* @return @c 1 if @p node is a MathML logical operator (@c and, @c or,
* @c not, @c xor), @c 0otherwise.
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_isLogical (const ASTNode_t *node);
/**
* Returns true if the given node is a named entity.
*
* More precisely, this returns a true value if @p node is a user-defined
* variable name or the special symbols @c time or @c avogadro.
* @param node the node to query
*
* @return @c 1 if @p node is a named variable, @c 0 otherwise.
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_isName (const ASTNode_t *node);
/**
* Returns true if the given node represents not-a-number.
*
* @param node the node to query
*
* @return @c 1 if @p node is the special IEEE 754 value NaN ("not a
* number"), @c 0 otherwise.
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_isNaN (const ASTNode_t *node);
/**
* Returns true if the given node represents negative infinity.
*
* @param node the node to query
*
* @return @c 1 if @p node is the special IEEE 754 value negative infinity,
* @c 0 otherwise.
*
* @see ASTNode_isInfinity()
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_isNegInfinity (const ASTNode_t *node);
/**
* Returns true if the given node contains a number.
*
* This is functionally equivalent to:
* @code{.c}
ASTNode_isInteger(node) || ASTNode_isReal(node).
@endcode
*
* @param node the node to query
*
* @return @c 1 if @p node is a number, @c 0 otherwise.
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_isNumber (const ASTNode_t *node);
/**
* Returns true if the given node is a mathematical operator.
*
* The possible mathematical operators are <code>+</code>, <code>-</code>,
* <code>*</code>, <code>/</code> and <code>^</code> (power).
*
* @param node the node to query
*
* @return @c 1 if @p node is an operator, @c 0 otherwise.
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_isOperator (const ASTNode_t *node);
/**
* Returns true if the given node represents the MathML
* <code><piecewise></code> operator.
*
* @param node the node to query
*
* @return @c 1 if @p node is the MathML piecewise function, @c 0 otherwise.
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_isPiecewise (const ASTNode_t *node);
/**
* Returns true if the given node represents a MathML
* qualifier (i.e., @c bvar, @c degree, @c base, @c piece, @c otherwise),
* @c false (zero) otherwise.
*
* More precisely, this node must be of one of the following types:
* @sbmlconstant{AST_QUALIFIER_BVAR, ASTNodeType_t},
* @sbmlconstant{AST_QUALIFIER_LOGBASE, ASTNodeType_t},
* @sbmlconstant{AST_QUALIFIER_DEGREE, ASTNodeType_t},
* @sbmlconstant{AST_CONSTRUCTOR_PIECE, ASTNodeType_t} or
* @sbmlconstant{AST_CONSTRUCTOR_OTHERWISE, ASTNodeType_t}.
*
* @param node the node to query
*
* @return @c 1 if @p node is a MathML qualifier, @c 0 otherwise.
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_isQualifier (const ASTNode_t *node);
/**
* Returns true if the given node represents a rational number.
*
* @param node the node to query
*
* @return @c 1 if @p node is of type @sbmlconstant{AST_RATIONAL,
* ASTNodeType_t}, @c 0 otherwise.
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_isRational (const ASTNode_t *node);
/**
* Returns true if the given node represents a real number.
*
* More precisely, this node must be of one of the following types:
* @sbmlconstant{AST_REAL, ASTNodeType_t}, @sbmlconstant{AST_REAL_E,
* ASTNodeType_t} or @sbmlconstant{AST_RATIONAL, ASTNodeType_t}.
*
* @param node the node to query
*
* @return @c 1 if the value of @p node can represent a real number,
* @c 0 otherwise.
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_isReal (const ASTNode_t *node);
/**
* Returns true if the given node represents a MathML relational operator.
*
* @param node the node to query
*
* @return @c 1 if @p node is a MathML relational operator, meaning
* <code>==</code>, <code>>=</code>, <code>></code>,
* <code><</code>, and <code>!=</code>.
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_isRelational (const ASTNode_t *node);
/**
* Returns true if the given node represents a semantics node.
*
* @param node the node to query
*
* @return @c 1 if @p node is of type
* @sbmlconstant{AST_SEMANTICS, ASTNodeType_t}, @c 0 otherwise.
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_isSemantics (const ASTNode_t *node);
/**
* Returns true if the given node is the MathML square-root operator.
*
* More precisely, the node type must be @sbmlconstant{AST_FUNCTION_ROOT,
* ASTNodeType_t} with two children, the first of which is an
* @sbmlconstant{AST_INTEGER, ASTNodeType_t} node having value equal to 2.
*
* @param node the node to query
*
* @return @c 1 if @p node represents a sqrt() function, @c 0 otherwise.
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_isSqrt (const ASTNode_t *node);
/**
* Returns true if the given node represents a unary minus.
*
* A node is defined as a unary minus node if it is of type
* @sbmlconstant{AST_MINUS, ASTNodeType_t} and has exactly one child.
*
* For numbers, unary minus nodes can be "collapsed" by negating the number.
* In fact, SBML_parseFormula() does this during its parsing process, and
* SBML_parseL3Formula() has a configuration option that allows this behavior
* to be turned on or off. However, unary minus nodes for symbols
* (@sbmlconstant{AST_NAME, ASTNodeType_t}) cannot be "collapsed", so this
* predicate function is still necessary.
*
* @param node the node to query
*
* @return @c 1 if @p node is a unary minus, @c 0 otherwise.
*
* @see SBML_parseL3Formula()
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_isUMinus (const ASTNode_t *node);
/**
* Returns true if the given node is a unary plus.
*
* A node is defined as a unary minus node if it is of type
* @sbmlconstant{AST_MINUS, ASTNodeType_t} and has exactly one child.
*
* @param node the node to query
*
* @return @c 1 if @p node is a unary plus, @c 0 otherwise.
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_isUPlus (const ASTNode_t *node);
/**
* Returns true if the given node is of a specific type and has a specific
* number of children.
*
* This function is designed for use in cases such as when callers want to
* determine if the node is a unary @c not or unary @c minus, or a @c times
* node with no children, etc.
*
* @param node the node to query
* @param type the type that the node should have
* @param numchildren the number of children that the node should have.
*
* @return @c 1 if @p node is has the specified type and number of children,
* @c 0 otherwise.
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_hasTypeAndNumChildren(const ASTNode_t *node, ASTNodeType_t type, unsigned int numchildren);
/**
* Returns true if the type of the node is unknown.
*
* "Unknown" nodes have the type @sbmlconstant{AST_UNKNOWN, ASTNodeType_t}.
* Nodes with unknown types will not appear in an ASTNode_t tree returned by
* libSBML based upon valid SBML input; the only situation in which a node
* with type @sbmlconstant{AST_UNKNOWN, ASTNodeType_t} may appear is
* immediately after having create a new, untyped node using the ASTNode_t
* constructor. Callers creating nodes should endeavor to set the type to a
* valid node type as soon as possible after creating new nodes.
*
* @param node the node to query
*
* @return @c 1 if @p node is of type @c AST_UNKNOWN, @c 0 otherwise.
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_isUnknown (const ASTNode_t *node);
/**
* Returns true if the given node's MathML @c id attribute is set.
*
* @param node the node to query
*
* @return @c 1 if it is set, @c 0 otherwise.
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_isSetId (const ASTNode_t *node);
/**
* Returns true if the given node's MathML @c class attribute is set.
*
* @param node the node to query
*
* @return @c 1 if the attribute is set, @c 0 otherwise.
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_isSetClass (const ASTNode_t *node);
/**
* Returns true if the given node's MathML @c style attribute is set.
*
* @param node the node to query
*
* @return @c 1 if the attribute is set, @c 0 otherwise.
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_isSetStyle (const ASTNode_t *node);
/**
* Returns true if this node's SBML "units" attribute is set.
*
* @htmlinclude about-sbml-units-attrib.html
*
* @param node the node to query
*
* @return @c 1 if the attribute is set, @c 0 otherwise.
*
* @note The <code>sbml:units</code> attribute is only available in SBML
* Level 3. It may not be used in Levels 1–2 of SBML.
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_isSetUnits (const ASTNode_t *node);
/**
* Returns true if the given node or any of its children have the SBML
* "units" attribute set.
*
* @htmlinclude about-sbml-units-attrib.html
*
* @param node the node to query
*
* @return @c 1 if the attribute is set, @c 0 otherwise.
*
* @note The <code>sbml:units</code> attribute is only available in SBML
* Level 3. It may not be used in Levels 1–2 of SBML.
*
* @see ASTNode_isSetUnits()
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_hasUnits (const ASTNode_t *node);
/**
* Sets the value of a given node to a character.
*
* If character is one of @c +, @c -, <code>*</code>, <code>/</code> or @c ^,
* the node type will be set accordingly. For all other characters, the node
* type will be set to @sbmlconstant{AST_UNKNOWN, ASTNodeType_t}.
*
* @param node the node to set
* @param value the character value for the node.
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_INVALID_OBJECT, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_setCharacter (ASTNode_t *node, char value);
/**
* Sets the node to represent a named entity.
*
* As a side-effect, this ASTNode_t object's type will be reset to
* @sbmlconstant{AST_NAME, ASTNodeType_t} if (and <em>only if</em>) the @p
* node was previously an operator (i.e., ASTNode_isOperator() returns true),
* number (i.e., ASTNode_isNumber() returns true), or unknown. This allows
* names to be set for @sbmlconstant{AST_FUNCTION, ASTNodeType_t} nodes and
* the like.
*
* @param node the node to set
* @param name the name value for the node
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_INVALID_OBJECT, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_setName (ASTNode_t *node, const char *name);
/**
* Sets the given node to a integer and sets it type
* to @sbmlconstant{AST_INTEGER, ASTNodeType_t}.
*
* @param node the node to set
* @param value the value to set it to
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_INVALID_OBJECT, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_setInteger (ASTNode_t *node, long value);
/**
* Sets the value of a given node to a rational number and sets its type to
* @sbmlconstant{AST_RATIONAL, ASTNodeType_t}.
*
* @param node the node to set
* @param numerator the numerator value to use
* @param denominator the denominator value to use
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_INVALID_OBJECT, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_setRational (ASTNode_t *node, long numerator, long denominator);
/**
* Sets the value of a given node to a real (@c double) and sets its type to
* @sbmlconstant{AST_REAL, ASTNodeType_t}.
*
* This is functionally equivalent to:
* @verbatim
ASTNode_setRealWithExponent(node, value, 0);
@endverbatim
*
* @param node the node to set
* @param value the value to set the node to
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_INVALID_OBJECT, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_setReal (ASTNode_t *node, double value);
/**
* Sets the value of a given node to a real (@c double) in two parts, a
* mantissa and an exponent.
*
* As a side-effect, the @p node's type will be set to
* @sbmlconstant{AST_REAL, ASTNodeType_t}.
*
* @param node the node to set
* @param mantissa the mantissa of this node's real-numbered value
* @param exponent the exponent of this node's real-numbered value
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_INVALID_OBJECT, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_setRealWithExponent (ASTNode_t *node, double mantissa, long exponent);
/**
* Explicitly sets the type of the given ASTNode_t structure.
*
* @param node the node to set
* @param type the new type
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_INVALID_OBJECT, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
*
* @note A side-effect of doing this is that any numerical values previously
* stored in this node are reset to zero.
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_setType (ASTNode_t *node, ASTNodeType_t type);
/**
* Sets the MathML @c id attribute of the given node.
*
* @param node the node to set
* @param id the identifier to use
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_INVALID_OBJECT, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_setId (ASTNode_t *node, const char *id);
/**
* Sets the MathML @c class of the given node.
*
* @param node the node to set
* @param className the new value for the @c class attribute
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_INVALID_OBJECT, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_setClass (ASTNode_t *node, const char *className);
/**
* Sets the MathML @c style of the given node.
*
* @param node the node to set
* @param style the new value for the @c style attribute
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_INVALID_OBJECT, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_setStyle (ASTNode_t *node, const char *style);
/**
* Sets the units of the given node.
*
* The units will be set @em only if the ASTNode_t structure in @p node
* represents a MathML <code><cn></code> element, i.e., represents a
* number. Callers may use ASTNode_isNumber() to inquire whether the node is
* of that type.
*
*
* @htmlinclude about-sbml-units-attrib.html
*
* @param node the node to modify
* @param units the units to set it to.
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_INVALID_OBJECT, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
*
* @note The <code>sbml:units</code> attribute is only available in SBML
* Level 3. It may not be used in Levels 1–2 of SBML.
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_setUnits (ASTNode_t *node, const char *units);
/**
* Swaps the children of two nodes.
*
* @param node the node to modify
*
* @param that the other node whose children should be used to replace those
* of @p node
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_INVALID_OBJECT, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_swapChildren (ASTNode_t *node, ASTNode_t *that);
/**
* Unsets the MathML @c id attribute of the given node.
*
* @param node the node to modify
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_INVALID_OBJECT, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_OPERATION_FAILED, OperationReturnValues_t}
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_unsetId (ASTNode_t *node);
/**
* Unsets the MathML @c class attribute of the given node.
*
* @param node the node to modify
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_INVALID_OBJECT, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_OPERATION_FAILED, OperationReturnValues_t}
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_unsetClass (ASTNode_t *node);
/**
* Unsets the MathML @c style attribute of the given node.
*
* @param node the node to modify
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_INVALID_OBJECT, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_OPERATION_FAILED, OperationReturnValues_t}
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_unsetStyle (ASTNode_t *node);
/**
* Unsets the units associated with the given node.
*
* @param node the node to modify
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_INVALID_OBJECT, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_OPERATION_FAILED, OperationReturnValues_t}
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_unsetUnits (ASTNode_t *node);
/**
* Replaces occurrences of a given name with a new ASTNode_t structure.
*
* For example, if the formula in @p node is <code>x + y</code>, then the
* <code><bvar></code> is @c x and @c arg is an ASTNode_t structure
* representing the real value @c 3. This function substitutes @c 3 for @c x
* within the @p node ASTNode_t structure.
*
* @param node the node to modify
* @param bvar the MathML <code><bvar></code> to use
* @param arg the replacement node or structure
*
* @memberof ASTNode_t
*
* @see ASTNode_replaceAndDeleteArgument()
*/
LIBSBML_EXTERN
void
ASTNode_replaceArgument(ASTNode_t* node, const char * bvar, ASTNode_t* arg);
/**
* Reduces the given node to a binary true.
*
* Example: if @p node is <code>and(x, y, z)</code>, then the formula of the
* reduced node is <code>and(and(x, y), z)</code>. The operation replaces
* the formula stored in the current ASTNode_t structure.
*
* @param node the node to modify
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
void
ASTNode_reduceToBinary(ASTNode_t* node);
/**
* Returns the parent SBase_t structure containing the given node.
*
* @param node the node to query
*
* @return a pointer to the structure containing the given node.
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
SBase_t *
ASTNode_getParentSBMLObject(ASTNode_t* node);
/**
* Returns true if the given node's parent SBML object is set.
*
* @param node the node to query
*
* @return @c 1 if the parent SBML object is set, @c 0 otherwise.
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_isSetParentSBMLObject(ASTNode_t* node);
/**
* Sets the parent SBase_t structure.
*
* @param node the node to modify
* @param sb the parent SBase_t structure of this ASTNode_t.
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_OPERATION_FAILED, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_INVALID_OBJECT, OperationReturnValues_t}
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_setParentSBMLObject(ASTNode_t* node, SBase_t * sb);
/**
* Unsets the parent SBase_t structure.
*
* @param node the node to modify
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_OPERATION_FAILED, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_INVALID_OBJECT, OperationReturnValues_t}
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_unsetParentSBMLObject(ASTNode_t* node);
/**
* Adds a given XML node structure as a MathML <code><semantics></code> element
* of a given ASTNode_t structure.
*
* @copydetails doc_about_mathml_semantic_annotations
*
* @param node the node to modify
* @param disownedAnnotation the annotation to add
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_INVALID_OBJECT, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_OPERATION_FAILED, OperationReturnValues_t}
*
* @copydetails doc_note_mathml_semantic_annotations_uncommon
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_addSemanticsAnnotation(ASTNode_t* node, XMLNode_t * disownedAnnotation);
/**
* Returns the number of MathML semantic annotations inside the given node.
*
* @htmlinclude about-semantic-annotations.html
*
* @param node the node to query
*
* @return a count of the semantic annotations.
*
* @see ASTNode_addSemanticsAnnotation()
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
unsigned int
ASTNode_getNumSemanticsAnnotations(ASTNode_t* node);
/**
* Returns the nth MathML semantic annotation attached to the given node.
*
* @copydetails doc_about_mathml_semantic_annotations
*
* @param node the node to query
* @param n the index of the semantic annotation to fetch
*
* @return the nth semantic annotation on @p node , or a null pointer if the
* node has no nth annotation (which would mean that <code>n >
* ASTNode_getNumSemanticsAnnotations(node) - 1</code>).
*
* @copydetails doc_note_mathml_semantic_annotations_uncommon
*
* @see ASTNode_addSemanticsAnnotation()
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
XMLNode_t *
ASTNode_getSemanticsAnnotation(ASTNode_t* node, unsigned int n);
/**
* Sets the user data of the given node.
*
* The user data can be used by the application developer to attach custom
* information to the node. In case of a deep copy, this attribute will
* passed as it is. The attribute will be never interpreted by this class.
*
* @param node the node to modify
* @param userData the new user data
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_INVALID_OBJECT, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_OPERATION_FAILED, OperationReturnValues_t}
*
* @see ASTNode_getUserData()
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_setUserData(ASTNode_t* node, void *userData);
/**
* Returns the user data associated with this node.
*
* @param node the node to query
*
* @return the user data of this node, or a null pointer if no user data has
* been set.
*
* @see ASTNode_setUserData()
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
void *
ASTNode_getUserData(const ASTNode_t* node);
/**
* Unsets the user data of the given node.
*
* The user data can be used by the application developer to attach custom
* information to the node. In case of a deep copy, this attribute will
* passed as it is. The attribute will be never interpreted by this class.
*
* @param node the node to modify
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_INVALID_OBJECT, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_OPERATION_FAILED, OperationReturnValues_t}
*
* @see ASTNode_getUserData()
* @see ASTNode_setUserData()
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_unsetUserData(ASTNode_t* node);
/**
* Returns true if the given node's user data object is set.
*
* @param node the node to query
*
* @return @c 1 if the user data object is set, @c 0 otherwise.
*
* @see ASTNode_setUserData()
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_isSetUserData(const ASTNode_t* node);
/**
* Returns true if the given node has the correct number of children for its
* type.
*
* For example, an ASTNode_t structure with type @sbmlconstant{AST_PLUS,
* ASTNodeType_t} expects 2 child nodes.
*
* @param node the node to query
*
* @return @c 1 if @p node has the appropriate number of children for its
* type, @c 0 otherwise.
*
* @note This function performs a check on the top-level node only. Child
* nodes are not checked.
*
* @see ASTNode_isWellFormedASTNode()
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_hasCorrectNumberArguments(ASTNode_t* node);
/**
* Returns true if the given node is well-formed.
*
* @param node the node to query
*
* @return @c 1 if @p node is well-formed, @c 0 otherwise.
*
* @note An ASTNode_t may be well-formed, with each node and its children
* having the appropriate number of children for the given type, but may
* still be invalid in the context of its use within an SBML model.
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_isWellFormedASTNode(ASTNode_t* node);
/**
* Returns the MathML @c definitionURL attribute value of the given node.
*
* @param node the node to query
*
* @return the value of the @c definitionURL attribute in the form of a
* libSBML XMLAttributes_t structure, or a null pointer if @p node does not
* have a value for the attribute.
*
* @see ASTNode_getDefinitionURLString()
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
XMLAttributes_t *
ASTNode_getDefinitionURL(ASTNode_t* node);
/**
* Returns the MathML @c definitionURL attribute value of the given node as a
* string.
*
* @param node the node to query
*
* @return the value of the @c definitionURL attribute in the form of a
* string, or a null pointer if @p node does not have a value for the
* attribute.
*
* @see ASTNode_getDefinitionURL()
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
char *
ASTNode_getDefinitionURLString(ASTNode_t* node);
/**
* Sets the MathML @c definitionURL attribute of the given node.
*
* @param node the node to modify
* @param defnURL the value to which the attribute should be set
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_INVALID_OBJECT, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_setDefinitionURL(ASTNode_t* node, XMLAttributes_t * defnURL);
/**
* Sets the MathML @c definitionURL attribute of the given node.
*
* @param node the node to modify
* @param defnURL a string to which the attribute should be set
*
* @copydetails doc_returns_success_code
* @li @sbmlconstant{LIBSBML_INVALID_OBJECT, OperationReturnValues_t}
* @li @sbmlconstant{LIBSBML_OPERATION_SUCCESS, OperationReturnValues_t}
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_setDefinitionURLString(ASTNode_t* node, const char * defnURL);
/** @cond doxygenLibsbmlInternal */
/**
*
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_true(const ASTNode_t *node);
/** @endcond */
/** @cond doxygenLibsbmlInternal */
/**
* Used internally for L3FormulaFormatter to know whether to write a package
* function as 'functioname(arguments)' or not.
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_isPackageInfixFunction(const ASTNode_t *node);
/** @endcond */
/** @cond doxygenLibsbmlInternal */
/**
* Used internally for L3FormulaFormatter to know whether writing a package
* function has special package-specific syntax.
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_hasPackageOnlyInfixSyntax(const ASTNode_t *node);
/** @endcond */
/** @cond doxygenLibsbmlInternal */
/**
* Used internally for L3FormulaFormatter to know what the precedence is for
* a package function.
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_getL3PackageInfixPrecedence(const ASTNode_t *node);
/** @endcond */
/** @cond doxygenLibsbmlInternal */
/**
* Used internally for L3FormulaFormatter to know whether writing a package
* function has special package-specific syntax.
*
* @memberof ASTNode_t
*/
LIBSBML_EXTERN
int
ASTNode_hasUnambiguousPackageInfixGrammar(const ASTNode_t *node, const ASTNode_t *child);
/** @endcond */
END_C_DECLS
LIBSBML_CPP_NAMESPACE_END
#endif /* !SWIG */
#endif /* ASTNode_h */
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