/usr/include/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.h is in libsbml5-dev 5.13.0+dfsg-1.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 | /**
* @file LayoutSBMLDocumentPlugin.h
* @brief Implementation of the LayoutSBMLDocumentPlugin class
* @author Generated by autocreate code
*
* <!--------------------------------------------------------------------------
* This file is part of libSBML. Please visit http://sbml.org for more
* information about SBML, and the latest version of libSBML.
*
* Copyright (C) 2013-2016 jointly by the following organizations:
* 1. California Institute of Technology, Pasadena, CA, USA
* 2. EMBL European Bioinformatics Institute (EMBL-EBI), Hinxton, UK
* 3. University of Heidelberg, Heidelberg, Germany
*
* Copyright (C) 2009-2013 jointly by the following organizations:
* 1. California Institute of Technology, Pasadena, CA, USA
* 2. EMBL European Bioinformatics Institute (EMBL-EBI), Hinxton, UK
*
* Copyright (C) 2006-2008 by the California Institute of Technology,
* Pasadena, CA, USA
*
* Copyright (C) 2002-2005 jointly by the following organizations:
* 1. California Institute of Technology, Pasadena, CA, USA
* 2. Japan Science and Technology Agency, Japan
*
* This library is free software; you can redistribute it and/or modify it
* under the terms of the GNU Lesser General Public License as published by
* the Free Software Foundation. A copy of the license agreement is provided
* in the file named "LICENSE.txt" included with this software distribution
* and also available online as http://sbml.org/software/libsbml/license.html
* ------------------------------------------------------------------------ -->
*
* @class LayoutSBMLDocumentPlugin
* @sbmlbrief{layout} Extension of SBMLDocument.
*
* The LayoutSBMLDocumentPlugin class inherits from the SBMLDocumentPlugin
* class, and codifies the extensions to the SBMLDocument class defined in
* the SBML Level 3 @ref layout (“layout”) package.
*
* The LayoutSBMLDocumentPlugin defines a
* required flag named <code>required</code>, which indicates whether the
* 'fbc' constructs can be used to change the core mathematics of the
* <code><model></code> child of the <code><sbml></code> element.
* Because they can not, this attribute must be set @c false.
*/
#ifndef LayoutSBMLDocumentPlugin_H__
#define LayoutSBMLDocumentPlugin_H__
#include <sbml/common/extern.h>
#ifdef __cplusplus
#include <sbml/extension/SBMLDocumentPlugin.h>
#include <sbml/packages/layout/extension/LayoutExtension.h>
#include <sbml/util/IdList.h>
LIBSBML_CPP_NAMESPACE_BEGIN
class LIBSBML_EXTERN LayoutSBMLDocumentPlugin : public SBMLDocumentPlugin
{
public:
/**
* Creates a new LayoutSBMLDocumentPlugin
*/
LayoutSBMLDocumentPlugin(const std::string& uri, const std::string& prefix,
LayoutPkgNamespaces* layoutns);
/**
* Copy constructor for LayoutSBMLDocumentPlugin.
*
* @param orig; the LayoutSBMLDocumentPlugin instance to copy.
*/
LayoutSBMLDocumentPlugin(const LayoutSBMLDocumentPlugin& orig);
/**
* Assignment operator for LayoutSBMLDocumentPlugin.
*
* @param rhs; the object whose values are used as the basis
* of the assignment
*/
LayoutSBMLDocumentPlugin& operator=(const LayoutSBMLDocumentPlugin& rhs);
/**
* Creates and returns a deep copy of this LayoutSBMLDocumentPlugin object.
*
* @return a (deep) copy of this LayoutSBMLDocumentPlugin object.
*/
virtual LayoutSBMLDocumentPlugin* clone () const;
/**
* Destructor for LayoutSBMLDocumentPlugin.
*/
virtual ~LayoutSBMLDocumentPlugin();
#ifndef SWIG
/** @cond doxygenLibsbmlInternal */
/**
* Reads the attributes of corresponding package in SBMLDocument element
*/
virtual void readAttributes (const XMLAttributes& attributes,
const ExpectedAttributes& expectedAttributes);
/** @endcond */
#endif // SWIG
/** @cond doxygenLibsbmlInternal */
/**
* Returns boolean based on whether flattening of a comp model has been implemented.
*
* @returns @c true if flattening for composed models has been implemented,
* false otherwise.
*/
virtual bool isCompFlatteningImplemented() const;
/** @endcond */
/** @cond doxygenLibsbmlInternal */
/**
* Check consistency function.
*/
virtual unsigned int checkConsistency();
/** @endcond */
/** @cond doxygenLibsbmlInternal */
/**
* Accepts the SBMLVisitor.
*/
IdList getMetaidList() const;
bool haveValidationListsBeenPopulated() const;
void populateValidationLists();
IdList getIdList() const;
List * getListElementsWithId() const;
/** @endcond */
protected:
/** @cond doxygenLibsbmlInternal */
IdList mMetaIdList;
IdList mIdList;
List* mElementsWithId;
bool mValidationListsPopulated;
/** @endcond */
};
LIBSBML_CPP_NAMESPACE_END
#endif /* __cplusplus */
#endif /* LayoutSBMLDocumentPlugin_H__ */
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