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/*!
*
*
* \brief Weighted data sets for (un-)supervised learning.
*
*
* \par
* This file provides containers for data used by the models, loss
* functions, and learning algorithms (trainers). The reason for
* dedicated containers of this type is that data often need to be
* split into subsets, such as training and test data, or folds in
* cross-validation. The containers in this file provide memory
* efficient mechanisms for managing and providing such subsets.
* The speciality of these containers are that they are weighted.
*
*
*
* \author O. Krause
* \date 2014
*
*
* \par Copyright 1995-2015 Shark Development Team
*
* <BR><HR>
* This file is part of Shark.
* <http://image.diku.dk/shark/>
*
* Shark is free software: you can redistribute it and/or modify
* it under the terms of the GNU Lesser General Public License as published
* by the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* Shark is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU Lesser General Public License for more details.
*
* You should have received a copy of the GNU Lesser General Public License
* along with Shark. If not, see <http://www.gnu.org/licenses/>.
*
*/
//===========================================================================
#ifndef SHARK_DATA_WEIGHTED_DATASET_H
#define SHARK_DATA_WEIGHTED_DATASET_H
#include <shark/Data/Dataset.h>
namespace shark {
namespace detail{
template <class DataContainerT>
class BaseWeightedDataset : public ISerializable
{
private:
typedef BaseWeightedDataset<DataContainerT> self_type;
public:
typedef typename DataContainerT::element_type DataType;
typedef double WeightType;
typedef DataContainerT DataContainer;
typedef Data<WeightType> WeightContainer;
typedef typename DataContainer::IndexSet IndexSet;
// TYPEDEFS fOR PAIRS
typedef WeightedDataPair<
DataType,
WeightType
> element_type;
typedef typename Batch<element_type>::type batch_type;
// TYPEDEFS FOR RANGES
typedef typename PairRangeType<
element_type,
typename DataContainer::element_range,
typename WeightContainer::element_range
>::type element_range;
typedef typename PairRangeType<
element_type,
typename DataContainer::const_element_range,
typename WeightContainer::const_element_range
>::type const_element_range;
typedef typename PairRangeType<
batch_type,
typename DataContainer::batch_range,
typename WeightContainer::batch_range
>::type batch_range;
typedef typename PairRangeType<
batch_type,
typename DataContainer::const_batch_range,
typename WeightContainer::const_batch_range
>::type const_batch_range;
// TYPEDEFS FOR REFERENCES
typedef typename boost::range_reference<batch_range>::type batch_reference;
typedef typename boost::range_reference<const_batch_range>::type const_batch_reference;
typedef typename boost::range_reference<element_range>::type element_reference;
typedef typename boost::range_reference<const_element_range>::type const_element_reference;
///\brief Returns the range of elements.
///
///It is compatible to boost::range and STL and can be used whenever an algorithm requires
///element access via begin()/end() in which case data.elements() provides the correct interface
const_element_range elements()const{
return zipPairRange<element_type>(m_data.elements(),m_weights.elements());
}
///\brief Returns therange of elements.
///
///It is compatible to boost::range and STL and can be used whenever an algorithm requires
///element access via begin()/end() in which case data.elements() provides the correct interface
element_range elements(){
return zipPairRange<element_type>(m_data.elements(),m_weights.elements());
}
///\brief Returns the range of batches.
///
///It is compatible to boost::range and STL and can be used whenever an algorithm requires
///element access via begin()/end() in which case data.elements() provides the correct interface
const_batch_range batches()const{
return zipPairRange<batch_type>(m_data.batches(),m_weights.batches());
}
///\brief Returns the range of batches.
///
///It is compatible to boost::range and STL and can be used whenever an algorithm requires
///element access via begin()/end() in which case data.elements() provides the correct interface
batch_range batches(){
return zipPairRange<batch_type>(m_data.batches(),m_weights.batches());
}
///\brief Returns the number of batches of the set.
std::size_t numberOfBatches() const{
return m_data.numberOfBatches();
}
///\brief Returns the total number of elements.
std::size_t numberOfElements() const{
return m_data.numberOfElements();
}
///\brief Check whether the set is empty.
bool empty() const{
return m_data.empty();
}
///\brief Access to the stored data points as a separate container.
DataContainer const& data() const{
return m_data;
}
///\brief Access to the stored data points as a separate container.
DataContainer& data(){
return m_data;
}
///\brief Access to weights as a separate container.
WeightContainer const& weights() const{
return m_weights;
}
///\brief Access to weights as a separate container.
WeightContainer& weights(){
return m_weights;
}
// CONSTRUCTORS
///\brief Constructs an Empty data set.
BaseWeightedDataset()
{}
///\brief Create an empty set with just the correct number of batches.
///
/// The user must initialize the dataset after that by himself.
BaseWeightedDataset(std::size_t numBatches)
: m_data(numBatches),m_weights(numBatches)
{}
/// \brief Construtor using a single element as blueprint to create a dataset with a specified number of elements.
///
/// Optionally the desired batch Size can be set
///
///@param size the new size of the container
///@param element the blueprint element from which to create the Container
///@param batchSize the size of the batches. if this is 0, the size is unlimited
BaseWeightedDataset(std::size_t size, element_type const& element, std::size_t batchSize)
: m_data(size,element.data,batchSize)
, m_weights(size,element.weight,batchSize)
{}
///\brief Construction from data and a dataset rpresnting the weights
///
/// Beware that when calling this constructor the organization of batches must be equal in both
/// containers. This Constructor will not reorganize the data!
BaseWeightedDataset(DataContainer const& data, Data<WeightType> const& weights)
: m_data(data), m_weights(weights)
{
SHARK_CHECK(data.numberOfElements() == weights.numberOfElements(), "[ BaseWeightedDataset::WeightedUnlabeledData] number of data and number of weights must agree");
#ifndef DNDEBUG
for(std::size_t i = 0; i != data.numberOfBatches(); ++i){
SIZE_CHECK(shark::size(data.batch(i))==shark::size(weights.batch(i)));
}
#endif
}
///\brief Construction from data. All points get the same weight assigned
BaseWeightedDataset(DataContainer const& data, double weight)
: m_data(data), m_weights(data.numberOfBatches())
{
for(std::size_t i = 0; i != numberOfBatches(); ++i){
std::size_t batchSize = boost::size(m_data.batch(i));
m_weights.batch(i) = Batch<WeightType>::type(batchSize,weight);
}
}
// ELEMENT ACCESS
element_reference element(std::size_t i){
return element_reference(m_data.element(i),m_weights.element(i));
}
const_element_reference element(std::size_t i) const{
return const_element_reference(m_data.element(i),m_weights.element(i));
}
// BATCH ACCESS
batch_reference batch(std::size_t i){
return batch_reference(m_data.batch(i),m_weights.batch(i));
}
const_batch_reference batch(std::size_t i) const{
return const_batch_reference(m_data.batch(i),m_weights.batch(i));
}
// MISC
/// from ISerializable
void read(InArchive& archive){
archive & m_data;
archive & m_weights;
}
/// from ISerializable
void write(OutArchive& archive) const{
archive & m_data;
archive & m_weights;
}
///\brief This method makes the vector independent of all siblings and parents.
virtual void makeIndependent(){
m_weights.makeIndependent();
m_data.makeIndependent();
}
///\brief shuffles all elements in the entire dataset (that is, also across the batches)
virtual void shuffle(){
DiscreteUniform<Rng::rng_type> uni(Rng::globalRng);
shark::shuffle(this->elements().begin(),this->elements().end(), uni);
}
void splitBatch(std::size_t batch, std::size_t elementIndex){
m_data.splitBatch(batch,elementIndex);
m_weights.splitBatch(batch,elementIndex);
}
/// \brief Appends the contents of another data object to the end
///
/// The batches are not copied but now referenced from both datasets. Thus changing the appended
/// dataset might change this one as well.
void append(self_type const& other){
m_data.append(other.m_data);
m_weights.append(other.m_weights);
}
///\brief Reorders the batch structure in the container to that indicated by the batchSizes vector
///
///After the operation the container will contain batchSizes.size() batches with the i-th batch having size batchSize[i].
///However the sum of all batch sizes must be equal to the current number of elements
template<class Range>
void repartition(Range const& batchSizes){
m_data.repartition(batchSizes);
m_weights.repartition(batchSizes);
}
/// \brief Creates a vector with the batch sizes of every batch.
///
/// This method can be used together with repartition to ensure
/// that two datasets have the same batch structure.
std::vector<std::size_t> getPartitioning()const{
return m_data.getPartitioning();
}
friend void swap( self_type& a, self_type& b){
swap(a.m_data,b.m_data);
swap(a.m_weights,b.m_weights);
}
// SUBSETS
///\brief Fill in the subset defined by the list of indices.
void indexedSubset(IndexSet const& indices, self_type& subset) const{
m_data.indexedSubset(indices,subset.m_data);
m_weights.indexedSubset(indices,subset.m_weights);
}
///\brief Fill in the subset defined by the list of indices as well as its complement.
void indexedSubset(IndexSet const& indices, self_type& subset, self_type& complement)const{
IndexSet comp;
detail::complement(indices,m_data.numberOfBatches(),comp);
m_data.indexedSubset(indices,subset.m_data);
m_weights.indexedSubset(indices,subset.m_weights);
m_data.indexedSubset(comp,complement.m_data);
m_weights.indexedSubset(comp,complement.m_weights);
}
private:
DataContainer m_data; /// point data
WeightContainer m_weights; /// weight data
};
}
///
/// \brief Weighted data set for unsupervised learning
///
/// The WeightedUnlabeledData class extends UnlabeledData for the
/// representation of data. In addition it holds and provides access to the corresponding weights.
///
/// WeightedUnlabeledData tries to mimic the underlying data as pairs of data points and weights.
/// this means that when accessing a batch by calling batch(i) or choosing one of the iterators
/// one access the input batch by batch(i).data and the weights by batch(i).weight
///
///this also holds true for single element access using operator(). Be aware, that direct access to element is
///a linear time operation. So it is not advisable to iterate over the elements, but instead iterate over the batches.
template <class DataT>
class WeightedUnlabeledData : public detail::BaseWeightedDataset <UnlabeledData<DataT> >
{
private:
typedef WeightedUnlabeledData<DataT> self_type;
typedef detail::BaseWeightedDataset <UnlabeledData<DataT> > base_type;
public:
using base_type::data;
using base_type::weights;
typedef typename base_type::DataType DataType;
typedef typename base_type::WeightType WeightType;
typedef typename base_type::element_type element_type;
typedef DataT InputType;
BOOST_STATIC_CONSTANT(std::size_t, DefaultBatchSize = UnlabeledData<DataT>::DefaultBatchSize);
// CONSTRUCTORS
///\brief Empty data set.
WeightedUnlabeledData()
{}
///\brief Create an empty set with just the correct number of batches.
///
/// The user must initialize the dataset after that by himself.
WeightedUnlabeledData(std::size_t numBatches)
: base_type(numBatches)
{}
/// \brief Construtor using a single element as blueprint to create a dataset with a specified number of elements.
///
/// Optionally the desired batch Size can be set
///
///@param size the new size of the container
///@param element the blueprint element from which to create the Container
///@param batchSize the size of the batches. if this is 0, the size is unlimited
WeightedUnlabeledData(std::size_t size, element_type const& element, std::size_t batchSize = DefaultBatchSize)
: base_type(size,element,batchSize){}
///\brief Construction from data.
///
/// Beware that when calling this constructor the organization of batches must be equal in both
/// containers. This Constructor will not reorganize the data!
WeightedUnlabeledData(UnlabeledData<DataType> const& data, Data<WeightType> const& weights)
: base_type(data,weights)
{}
///\brief Construction from data and a constant weight for all elements
WeightedUnlabeledData(UnlabeledData<DataType> const& data, double weight)
: base_type(data,weight)
{}
//we additionally add the two below for compatibility with UnlabeledData
///\brief Access to the inputs as a separate container.
UnlabeledData<DataT> const& inputs() const{
return data();
}
///\brief Access to the inputs as a separate container.
UnlabeledData<DataT>& inputs(){
return data();
}
///\brief Splits the container into two independent parts. The left part remains in the container, the right is stored as return type
///
///Order of elements remain unchanged. The SharedVector is not allowed to be shared for
///this to work.
self_type splice(std::size_t batch){
return self_type(data().splice(batch),weights().splice(batch));
}
friend void swap(WeightedUnlabeledData& a, WeightedUnlabeledData& b){
swap(static_cast<base_type&>(a),static_cast<base_type&>(b));
}
};
///brief Outstream of elements for weighted data.
template<class T>
std::ostream &operator << (std::ostream &stream, const WeightedUnlabeledData<T>& d) {
typedef typename WeightedUnlabeledData<T>::const_element_reference reference;
typename WeightedUnlabeledData<T>::const_element_range elements = d.elements();
BOOST_FOREACH(reference elem,elements)
stream << elem.weight << " [" << elem.data<<"]"<< "\n";
return stream;
}
/// \brief creates a weighted unweighted data object from two ranges, representing data and weights
template<class DataRange, class WeightRange>
typename boost::disable_if<
boost::is_arithmetic<WeightRange>,
WeightedUnlabeledData<
typename boost::range_value<DataRange>::type
>
>::type createUnlabeledDataFromRange(DataRange const& data, WeightRange const& weights, std::size_t batchSize = 0){
SHARK_CHECK(boost::size(data) == boost::size(weights),
"[createDataFromRange] number of data points and number of weights must agree");
typedef typename boost::range_value<DataRange>::type Data;
if (batchSize == 0)
batchSize = WeightedUnlabeledData<Data>::DefaultBatchSize;
return WeightedUnlabeledData<Data>(
shark::createUnlabeledDataFromRange(data,batchSize),
createDataFromRange(weights,batchSize)
);
}
///
/// \brief Weighted data set for supervised learning
///
/// The WeightedLabeledData class extends LabeledData for the
/// representation of data. In addition it holds and provides access to the corresponding weights.
///
/// WeightedLabeledData tries to mimic the underlying data as pairs of data tuples(input,label) and weights.
/// this means that when accessing a batch by calling batch(i) or choosing one of the iterators
/// one access the databatch by batch(i).data and the weights by batch(i).weight. to access the points and labels
/// use batch(i).data.input and batch(i).data.label
///
///this also holds true for single element access using operator(). Be aware, that direct access to element is
///a linear time operation. So it is not advisable to iterate over the elements, but instead iterate over the batches.
///
/// It is possible to gains everal views on the set. one can either get access to inputs, labels and weights separately
/// or gain access to the unweighted dataset of inputs and labels. Additionally the sets support on-the-fly creation
/// of the (inputs,weights) subset for unsupervised weighted learning
template <class InputT, class LabelT>
class WeightedLabeledData : public detail::BaseWeightedDataset <LabeledData<InputT,LabelT> >
{
private:
typedef WeightedLabeledData<InputT,LabelT> self_type;
typedef detail::BaseWeightedDataset <LabeledData<InputT,LabelT> > base_type;
public:
typedef typename base_type::DataType DataType;
typedef typename base_type::WeightType WeightType;
typedef InputT InputType;
typedef LabelT LabelType;
typedef typename base_type::element_type element_type;
using base_type::data;
using base_type::weights;
BOOST_STATIC_CONSTANT(std::size_t, DefaultBatchSize = (LabeledData<InputT,LabelT>::DefaultBatchSize));
// CONSTRUCTORS
///\brief Empty data set.
WeightedLabeledData()
{}
///\brief Create an empty set with just the correct number of batches.
///
/// The user must initialize the dataset after that by himself.
WeightedLabeledData(std::size_t numBatches)
: base_type(numBatches)
{}
/// \brief Construtor using a single element as blueprint to create a dataset with a specified number of elements.
///
/// Optionally the desired batch Size can be set
///
///@param size the new size of the container
///@param element the blueprint element from which to create the Container
///@param batchSize the size of the batches. if this is 0, the size is unlimited
WeightedLabeledData(std::size_t size, element_type const& element, std::size_t batchSize = DefaultBatchSize)
: base_type(size,element,batchSize){}
///\brief Construction from data.
///
/// Beware that when calling this constructor the organization of batches must be equal in both
/// containers. This Constructor will not reorganize the data!
WeightedLabeledData(LabeledData<InputType,LabelType> const& data, Data<WeightType> const& weights)
: base_type(data,weights)
{}
///\brief Construction from data and a constant weight for all elements
WeightedLabeledData(LabeledData<InputType,LabelType> const& data, double weight)
: base_type(data,weight)
{}
///\brief Access to the inputs as a separate container.
UnlabeledData<InputType> const& inputs() const{
return data().inputs();
}
///\brief Access to the inputs as a separate container.
UnlabeledData<InputType>& inputs(){
return data().inputs();
}
///\brief Access to the labels as a separate container.
Data<LabelType> const& labels() const{
return data().labels();
}
///\brief Access to the labels as a separate container.
Data<LabelType>& labels(){
return data().labels();
}
/// \brief Constructs an WeightedUnlabeledData object for the inputs.
WeightedUnlabeledData<InputType> weightedInputs() const{
return WeightedUnlabeledData<InputType>(data().inputs(),weights());
}
///\brief Splits the container into two independent parts. The left part remains in the container, the right is stored as return type
///
///Order of elements remain unchanged. The SharedVector is not allowed to be shared for
///this to work.
self_type splice(std::size_t batch){
return self_type(data().splice(batch),weights().splice(batch));
}
friend void swap(self_type& a, self_type& b){
swap(static_cast<base_type&>(a),static_cast<base_type&>(b));
}
};
///brief Outstream of elements for weighted labeled data.
template<class T, class U>
std::ostream &operator << (std::ostream &stream, const WeightedLabeledData<T, U>& d) {
typedef typename WeightedLabeledData<T, U>::const_element_reference reference;
typename WeightedLabeledData<T, U>::const_element_range elements = d.elements();
BOOST_FOREACH(reference elem,elements)
stream << elem.weight <<" ("<< elem.data.label << " [" << elem.data.input<<"] )"<< "\n";
return stream;
}
//Stuff for Dimensionality and querying of basic information
template<class InputType>
double sumOfWeights(WeightedUnlabeledData<InputType> const& dataset){
double weightSum = 0;
for(std::size_t i = 0; i != dataset.numberOfBatches(); ++i){
weightSum += sum(dataset.batch(i).weight);
}
return weightSum;
}
template<class InputType, class LabelType>
double sumOfWeights(WeightedLabeledData<InputType,LabelType> const& dataset){
double weightSum = 0;
for(std::size_t i = 0; i != dataset.numberOfBatches(); ++i){
weightSum += sum(dataset.batch(i).weight);
}
return weightSum;
}
inline std::size_t numberOfClasses(WeightedUnlabeledData<unsigned int> const& labels){
return numberOfClasses(labels.data());
}
///\brief Returns the number of members of each class in the dataset.
inline std::vector<std::size_t> classSizes(WeightedUnlabeledData<unsigned int> const& labels){
return classSizes(labels.data());
}
///\brief Return the dimnsionality of points of a weighted dataset
template <class InputType>
std::size_t dataDimension(WeightedUnlabeledData<InputType> const& dataset){
return dataDimension(dataset.data());
}
///\brief Return the input dimensionality of a weighted labeled dataset.
template <class InputType, class LabelType>
std::size_t inputDimension(WeightedLabeledData<InputType, LabelType> const& dataset){
return dataDimension(dataset.inputs());
}
///\brief Return the label/output dimensionality of a labeled dataset.
template <class InputType, class LabelType>
std::size_t labelDimension(WeightedLabeledData<InputType, LabelType> const& dataset){
return dataDimension(dataset.labels());
}
///\brief Return the number of classes (highest label value +1) of a classification dataset with unsigned int label encoding
template <class InputType>
std::size_t numberOfClasses(WeightedLabeledData<InputType, unsigned int> const& dataset){
return numberOfClasses(dataset.labels());
}
///\brief Returns the number of members of each class in the dataset.
template<class InputType, class LabelType>
inline std::vector<std::size_t> classSizes(WeightedLabeledData<InputType, LabelType> const& dataset){
return classSizes(dataset.labels());
}
//creation of weighted datasets
/// \brief creates a weighted unweighted data object from two ranges, representing data and weights
template<class InputRange,class LabelRange, class WeightRange>
typename boost::disable_if<
boost::is_arithmetic<WeightRange>,
WeightedLabeledData<
typename boost::range_value<InputRange>::type,
typename boost::range_value<LabelRange>::type
>
>::type createLabeledDataFromRange(InputRange const& inputs, LabelRange const& labels, WeightRange const& weights, std::size_t batchSize = 0){
SHARK_CHECK(boost::size(inputs) == boost::size(labels),
"[createDataFromRange] number of data points and number of weights must agree");
SHARK_CHECK(boost::size(inputs) == boost::size(weights),
"[createDataFromRange] number of data points and number of weights must agree");
typedef typename boost::range_value<InputRange>::type InputType;
typedef typename boost::range_value<LabelRange>::type LabelType;
if (batchSize == 0)
batchSize = WeightedLabeledData<InputRange,LabelRange>::DefaultBatchSize;
return WeightedLabeledData<InputType,LabelType>(
createLabeledDataFromRange(inputs,labels,batchSize),
createDataFromRange(weights,batchSize)
);
}
/// \brief Creates a bootstrap partition of a labeled dataset and returns it using weighting.
///
/// Bootstrapping resamples the dataset by drawing a set of points with
/// replacement. Thus the sampled set will contain some points multiple times
/// and some points not at all. Bootstrapping is usefull to obtain unbiased
/// measurements of the mean and variance of an estimator.
///
/// Optionally the size of the bootstrap (that is, the number of sampled points)
/// can be set. By default it is 0, which indicates that it is the same size as the original dataset.
template<class InputType, class LabelType>
WeightedLabeledData< InputType, LabelType> bootstrap(
LabeledData<InputType,LabelType> const& dataset,
std::size_t bootStrapSize = 0
){
if(bootStrapSize == 0)
bootStrapSize = dataset.numberOfElements();
WeightedLabeledData<InputType,LabelType> bootstrapSet(dataset,0.0);
for(std::size_t i = 0; i != bootStrapSize; ++i){
std::size_t index = Rng::discrete(0,bootStrapSize-1);
bootstrapSet.element(index).weight += 1.0;
}
return bootstrapSet;
}
/// \brief Creates a bootstrap partition of an unlabeled dataset and returns it using weighting.
///
/// Bootstrapping resamples the dataset by drawing a set of points with
/// replacement. Thus the sampled set will contain some points multiple times
/// and some points not at all. Bootstrapping is usefull to obtain unbiased
/// measurements of the mean and variance of an estimator.
///
/// Optionally the size of the bootstrap (that is, the number of sampled points)
/// can be set. By default it is 0, which indicates that it is the same size as the original dataset.
template<class InputType>
WeightedUnlabeledData<InputType> bootstrap(
UnlabeledData<InputType> const& dataset,
std::size_t bootStrapSize = 0
){
if(bootStrapSize == 0)
bootStrapSize = dataset.numberOfElements();
WeightedUnlabeledData<InputType> bootstrapSet(dataset,0.0);
for(std::size_t i = 0; i != bootStrapSize; ++i){
std::size_t index = Rng::discrete(0,bootStrapSize-1);
bootstrapSet.element(index).weight += 1.0;
}
return bootstrapSet;
}
/** @*/
}
#endif
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