/usr/include/smithwaterman/Repeats.h is in libsmithwaterman-dev 0.0+20160702-1+b1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 | #include <iostream>
#include <string>
#include <map>
using namespace std;
map<string, int> repeatCounts(long int pos, const string& seq, int maxsize);
bool isRepeatUnit(const string& seq, const string& unit);
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