This file is indexed.

/usr/include/trilinos/AnasaziThyraDebugAdapter.hpp is in libtrilinos-anasazi-dev 12.10.1-3.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
// @HEADER
// ***********************************************************************
//
//                 Anasazi: Block Eigensolvers Package
//                 Copyright (2004) Sandia Corporation
//
// Under terms of Contract DE-AC04-94AL85000, there is a non-exclusive
// license for use of this work by or on behalf of the U.S. Government.
//
// This library is free software; you can redistribute it and/or modify
// it under the terms of the GNU Lesser General Public License as
// published by the Free Software Foundation; either version 2.1 of the
// License, or (at your option) any later version.
//
// This library is distributed in the hope that it will be useful, but
// WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
// Lesser General Public License for more details.
//
// You should have received a copy of the GNU Lesser General Public
// License along with this library; if not, write to the Free Software
// Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301
// USA
// Questions? Contact Michael A. Heroux (maherou@sandia.gov)
//
// ***********************************************************************
// @HEADER

/*! \file AnasaziThyraDebugAdapter.hpp
  \brief Declarations of Anasazi multi-vector and operator classes using Thyra_MultiVectorBase and Thyra_LinearOpBase classes
*/

#ifndef ANASAZI_THYRA_DEBUG_ADAPTER_HPP
#define ANASAZI_THYRA_DEBUG_ADAPTER_HPP

#include "AnasaziConfigDefs.hpp"
#include "AnasaziTypes.hpp"
#include "AnasaziMultiVec.hpp"
#include "AnasaziOperator.hpp"

#include "AnasaziThyraAdapter.hpp"
#include <Thyra_DetachedMultiVectorView.hpp>
#include <Thyra_MultiVectorBase.hpp>
#include <Thyra_MultiVectorStdOps.hpp>

#include "Teuchos_Assert.hpp"
#include "Teuchos_SerialDenseMatrix.hpp"
#include "Teuchos_RCP.hpp"
#include "Teuchos_TimeMonitor.hpp"

namespace Anasazi {

  //@}

  ///////////////////////////////////////////////////////////////
  //
  //--------template class AnasaziThyraMultiVec-----------------
  //
  ///////////////////////////////////////////////////////////////

  /*!
    \brief Basic adapter class for Anasazi::MultiVec that uses Thyra::MultiVectorBase<ScalarType>.

    \note This adapter is only to be used for debugging purposes.  For production use Anasazi::MultiVecTraits templated
    on Thyra::MultiVectorBase<> and Thyra::LinearOpBase<>.

  */
  template<class ScalarType>
  class ThyraMultiVec : public MultiVec<ScalarType> {
  public:

    typedef MultiVecTraits<ScalarType,Thyra::MultiVectorBase<ScalarType> > MVT;
    typedef Teuchos::ScalarTraits<ScalarType> SCT;
    typedef typename Teuchos::ScalarTraits<ScalarType>::magnitudeType MagnitudeType;
    typedef Teuchos::ScalarTraits<MagnitudeType> MT;

    //! @name Constructors/Destructors
    //@{

    //! Basic ThyraMultiVec constructor (wraps Thyra::MultiVectorBase<> object).
    /*! @param mv [in] a reference-counted pointer to a Thyra::MultiVectorBase<> object.

      \returns Pointer to a ThyraMultiVec object.
    */
    ThyraMultiVec( const Teuchos::RCP<Thyra::MultiVectorBase< ScalarType > > & mv ) :
      _timerCreate(Teuchos::TimeMonitor::getNewTimer("ThyraMultiVec::create")),
      _timerClone(Teuchos::TimeMonitor::getNewTimer("ThyraMultiVec::clone")),
      _timerDestroy(Teuchos::TimeMonitor::getNewTimer("ThyraMultiVec::destroy")),
      _timerMvTimesMatAddMv(Teuchos::TimeMonitor::getNewTimer("ThyraMultiVec::mvtimesmataddmv")),
      _timerMvTransMv(Teuchos::TimeMonitor::getNewTimer("ThyraMultiVec::mvtransmv")),
      _timerMvAddMv(Teuchos::TimeMonitor::getNewTimer("ThyraMultiVec::mvaddmv")),
      _timerMvDot(Teuchos::TimeMonitor::getNewTimer("ThyraMultiVec::mvdot")),
      _timerMvNorm(Teuchos::TimeMonitor::getNewTimer("ThyraMultiVec::mvnorm")),
      _timerMvScale(Teuchos::TimeMonitor::getNewTimer("ThyraMultiVec::mvscale")),
      _timerSetBlock(Teuchos::TimeMonitor::getNewTimer("ThyraMultiVec::setblock")),
      _timerMvInit(Teuchos::TimeMonitor::getNewTimer("ThyraMultiVec::mvinit")),
      _timerMvRandom(Teuchos::TimeMonitor::getNewTimer("ThyraMultiVec::mvrandom"))
    {
      Teuchos::TimeMonitor timer(*_timerCreate);
      Thyra_MV = mv;
    }

    //! Basic ThyraMultiVec constructor (wraps Thyra::MultiVectorBase<> object).
    /*! @param mv [in] a reference-counted pointer to a Thyra::MultiVectorBase<> object.
        @param timers [in] a vector containing timers for this wrapper to use.

      \returns Pointer to a ThyraMultiVec object.
    */
    ThyraMultiVec( const Teuchos::RCP<Thyra::MultiVectorBase< ScalarType > > & mv, std::vector<Teuchos::RCP<Teuchos::Time> >& timers )
    {
      copyTimers( timers );
      Teuchos::TimeMonitor timer(*_timerCreate);
      Thyra_MV = mv;
    }

    //! Copy constructor.
    /*! @param mv [in] a ThyraMultiVec object.

      \returns Pointer to a ThyraMultiVec object, where the underlying Thyra::MultiVectorBase<> object has been deep copied.
    */
    ThyraMultiVec( const ThyraMultiVec<ScalarType> & mv )
    {
      copyTimers( mv.getTimers() );
      Teuchos::TimeMonitor timer(*_timerCreate);
      Thyra_MV = MVT::CloneCopy( *(mv.getRCP()) );
    }

    //! Destructor
    virtual ~ThyraMultiVec() { Teuchos::TimeMonitor timer(*_timerDestroy); }

    //@}

    //! @name Creation methods
    //@{

    /*! \brief Creates a new empty ThyraMultiVec containing \c numvecs columns.

    \returns Pointer to an ThyraMultiVec
    */
    MultiVec<ScalarType> * Clone ( const int numvecs ) const
    {
      Teuchos::TimeMonitor timer(*_timerClone);
      std::vector<Teuchos::RCP<Teuchos::Time> >  myTimers = getTimers();
      return new ThyraMultiVec<ScalarType>( MVT::Clone( *Thyra_MV, numvecs ), myTimers ); }

    /*! \brief Creates a new ThyraMultiVec and copies contents of \c *this into
      the new vector (deep copy).

      \returns Pointer to an ThyraMultiVec
    */
    MultiVec<ScalarType> * CloneCopy () const
    {
      Teuchos::TimeMonitor timer(*_timerClone);
      std::vector<Teuchos::RCP<Teuchos::Time> >  myTimers = getTimers();
      return new ThyraMultiVec<ScalarType>( MVT::CloneCopy( *Thyra_MV ), myTimers );
    }

    /*! \brief Creates a new ThyraMultiVec and copies the selected contents of \c *this
      into the new vector (deep copy).

      The copied vectors from \c *this are indicated by the \c index.size() indices in \c index.

      \returns Pointer to an ThyraMultiVec
    */
    MultiVec<ScalarType> * CloneCopy ( const std::vector<int>& index ) const
    {
      Teuchos::TimeMonitor timer(*_timerClone);
      std::vector<Teuchos::RCP<Teuchos::Time> >  myTimers = getTimers();
      return new ThyraMultiVec<ScalarType>( MVT::CloneCopy( *Thyra_MV, index ), myTimers );
    }

    /*! \brief Creates a new ThyraMultiVec that shares the selected contents of \c *this.

    The index of the \c numvecs vectors shallow copied from \c *this are indicated by the
    indices given in \c index.

    \returns Pointer to an ThyraMultiVec
    */
    MultiVec<ScalarType> * CloneViewNonConst ( const std::vector<int>& index )
    {
      Teuchos::TimeMonitor timer(*_timerClone);
      std::vector<Teuchos::RCP<Teuchos::Time> >  myTimers = getTimers();
      return new ThyraMultiVec<ScalarType>( MVT::CloneViewNonConst( *Thyra_MV, index ), myTimers );
    }

    /*! \brief Creates a new ThyraMultiVec that shares the selected contents of \c *this.

    The index of the \c numvecs vectors shallow copied from \c *this are indicated by the
    indices given in \c index.

    \returns Pointer to an ThyraMultiVec
    */
    const MultiVec<ScalarType> * CloneView ( const std::vector<int>& index ) const
    {
      Teuchos::TimeMonitor timer(*_timerClone);
      std::vector<Teuchos::RCP<Teuchos::Time> >  myTimers = getTimers();
      Teuchos::RCP<Thyra::MultiVectorBase<ScalarType> > nonconst_ptr_to_const_view = Teuchos::rcp_const_cast<Thyra::MultiVectorBase<ScalarType> >( MVT::CloneView(*Thyra_MV,index) );
      const MultiVec<ScalarType> * const_ret = new ThyraMultiVec<ScalarType>( nonconst_ptr_to_const_view, myTimers );
      return const_ret;
    }

    //@}

    //! @name Attribute methods
    //@{

    //! Obtain the vector length of *this.
    int GetNumberVecs () const { return MVT::GetNumberVecs( *Thyra_MV ); }

    //! Obtain the number of vectors in *this.
    ptrdiff_t GetGlobalLength () const { return MVT::GetGlobalLength( *Thyra_MV ); }

    //@}

    //! @name Update methods
    //@{
    /*! \brief Update \c *this with \f$\alpha AB + \beta (*this)\f$.
     */
    void MvTimesMatAddMv ( ScalarType alpha, const MultiVec<ScalarType>& A,
                           const Teuchos::SerialDenseMatrix<int,ScalarType>& B,
                           ScalarType beta )
    {
      Teuchos::TimeMonitor timer(*_timerMvTimesMatAddMv);
      const Anasazi::ThyraMultiVec<ScalarType>* vec_A = dynamic_cast<const Anasazi::ThyraMultiVec<ScalarType>* >(&A);
      MVT::MvTimesMatAddMv( alpha, *(vec_A->getRCP()), B, beta, *Thyra_MV );
    }

    /*! \brief Replace \c *this with \f$\alpha A + \beta B\f$.
     */
    void MvAddMv ( ScalarType alpha, const MultiVec<ScalarType>& A,
                   ScalarType beta, const MultiVec<ScalarType>& B)
    {
      Teuchos::TimeMonitor timer(*_timerMvAddMv);
      const Anasazi::ThyraMultiVec<ScalarType>* vec_A = dynamic_cast<const Anasazi::ThyraMultiVec<ScalarType>* >(&A);
      const Anasazi::ThyraMultiVec<ScalarType>* vec_B = dynamic_cast<const Anasazi::ThyraMultiVec<ScalarType>* >(&B);
      MVT::MvAddMv( alpha, *(vec_A->getRCP()), beta, *(vec_B->getRCP()), *Thyra_MV );
    }

    /*! \brief Compute a dense matrix \c B through the matrix-matrix multiply \f$\alpha A^T(*this)\f$.
    */
    void MvTransMv ( ScalarType alpha, const MultiVec<ScalarType>& A, Teuchos::SerialDenseMatrix<int,ScalarType>& B
#ifdef HAVE_ANASAZI_EXPERIMENTAL
        , ConjType conj = Anasazi::CONJ
#endif
        ) const
    {
      Teuchos::TimeMonitor timer(*_timerMvTransMv);
      const Anasazi::ThyraMultiVec<ScalarType>* vec_A = dynamic_cast<const Anasazi::ThyraMultiVec<ScalarType>* >(&A);
      MVT::MvTransMv( alpha, *(vec_A->getRCP()), *Thyra_MV, B );
    }

    /*! \brief Compute a vector \c b where the components are the individual dot-products, i.e. \f$ b[i] = A[i]^H(this[i])\f$ where \c A[i] is the i-th column of \c A.
    */
    void MvDot ( const MultiVec<ScalarType>& A, std::vector<ScalarType> &b
#ifdef HAVE_ANASAZI_EXPERIMENTAL
        , ConjType conj = Anasazi::CONJ
#endif
        ) const
    {
      Teuchos::TimeMonitor timer(*_timerMvDot);
      const Anasazi::ThyraMultiVec<ScalarType>* vec_A = dynamic_cast<const Anasazi::ThyraMultiVec<ScalarType>* >(&A);
      MVT::MvDot( *Thyra_MV, *(vec_A->getRCP()), b );
    }

    /*! \brief Scale each element of the vectors in \c *this with \c alpha.
     */
    void MvScale ( ScalarType alpha ) { Teuchos::TimeMonitor timer(*_timerMvScale); MVT::MvScale( *Thyra_MV, alpha ); }

    /*! \brief Scale each element of the \c i-th vector in \c *this with \c alpha[i].
     */
    void MvScale ( const std::vector<ScalarType>& alpha ) { Teuchos::TimeMonitor timer(*_timerMvScale); MVT::MvScale( *Thyra_MV, alpha ); }

    //@}
    //! @name Norm method
    //@{

    /*! \brief Compute the 2-norm of each individual vector of \c *this.
      Upon return, \c normvec[i] holds the 2-norm of the \c i-th vector of \c *this
    */
    void MvNorm ( std::vector<typename Teuchos::ScalarTraits<ScalarType>::magnitudeType> &normvec ) const { Teuchos::TimeMonitor timer(*_timerMvNorm); MVT::MvNorm( *Thyra_MV, normvec ); }
    //@}

    //! @name Initialization methods
    //@{
    /*! \brief Copy the vectors in \c A to a set of vectors in \c *this.

    The \c numvecs vectors in \c A are copied to a subset of vectors in \c *this
    indicated by the indices given in \c index.
    */
    void SetBlock ( const MultiVec<ScalarType>& A, const std::vector<int>& index )
    {
      Teuchos::TimeMonitor timer(*_timerSetBlock);
      const Anasazi::ThyraMultiVec<ScalarType>* vec_A = dynamic_cast<const Anasazi::ThyraMultiVec<ScalarType>* >(&A);
      MVT::SetBlock( *(vec_A->getRCP()), index, *Thyra_MV );
    }

    /*! \brief Fill the vectors in \c *this with random numbers.
     */
    void MvRandom() { Teuchos::TimeMonitor timer(*_timerMvRandom); MVT::MvRandom( *Thyra_MV ); }

    /*! \brief Replace each element of the vectors in \c *this with \c alpha.
     */
    void MvInit ( ScalarType alpha ) { Teuchos::TimeMonitor timer(*_timerMvInit);  MVT::MvInit( *Thyra_MV, alpha ); }

    //!{ @name Accessor methods
    //@{
    /*! \brief Return the reference-counted pointer held by this object
     */
    Teuchos::RCP< Thyra::MultiVectorBase<ScalarType> > getRCP() { return Thyra_MV; }

    /*! \brief Return the const reference-counted pointer held by this object
     */
    Teuchos::RCP< const Thyra::MultiVectorBase<ScalarType> > getRCP() const { return Thyra_MV; }

    /*! \brief Return a std::vector<> of timers held by this object
     */
    std::vector<Teuchos::RCP<Teuchos::Time> > getTimers() const {
     std::vector<Teuchos::RCP<Teuchos::Time> > timers;
     timers.push_back( _timerCreate );
     timers.push_back( _timerClone );
     timers.push_back( _timerDestroy );
     timers.push_back( _timerMvTimesMatAddMv );
     timers.push_back( _timerMvTransMv );
     timers.push_back( _timerMvAddMv );
     timers.push_back( _timerMvDot );
     timers.push_back( _timerMvNorm );
     timers.push_back( _timerMvScale );
     timers.push_back( _timerSetBlock );
     timers.push_back( _timerMvInit );
     timers.push_back( _timerMvRandom );

     return timers;
   }

   /*! \brief Copy a std::vector<> of timers into this object
    */
   void copyTimers( const std::vector<Teuchos::RCP<Teuchos::Time> >& timers ) {
     _timerCreate = timers[0];
     _timerClone = timers[1];
     _timerDestroy = timers[2];
     _timerMvTimesMatAddMv = timers[3];
     _timerMvTransMv = timers[4];
     _timerMvAddMv = timers[5];
     _timerMvDot = timers[6];
     _timerMvNorm = timers[7];
     _timerMvScale = timers[8];
     _timerSetBlock = timers[9];
     _timerMvInit = timers[10];
     _timerMvRandom = timers[11];
   }
    //@}

    //@}
    //! @name Print method
    //@{
    /*! \brief Print \c *this ThyraMultiVec.
     */
    void MvPrint( std::ostream& os ) const { MVT::MvPrint( *Thyra_MV, os ); }
    //@}

  private:

    Teuchos::RCP<Thyra::MultiVectorBase<ScalarType> > Thyra_MV;
    Teuchos::RCP<Teuchos::Time> _timerCreate, _timerClone, _timerDestroy;
    Teuchos::RCP<Teuchos::Time> _timerMvTimesMatAddMv, _timerMvTransMv, _timerMvAddMv, _timerMvDot;
    Teuchos::RCP<Teuchos::Time> _timerMvNorm, _timerMvScale, _timerSetBlock, _timerMvInit, _timerMvRandom;
  };
  //-------------------------------------------------------------

  ///////////////////////////////////////////////////////////////
  //
  //--------template class AnasaziThyraOp---------------------
  //
  ///////////////////////////////////////////////////////////////

  /*!
    \brief Basic adapter class for Anasazi::Operator that uses Thyra_Operator.

    \note The Thyra package performs double-precision arithmetic, so the use of Thyra with Anasazi will
    only provide a double-precision eigensolver.
  */
  template<class ScalarType>
  class ThyraOp : public virtual Operator<ScalarType> {
  public:

    typedef OperatorTraits<ScalarType,Thyra::MultiVectorBase<ScalarType>,Thyra::LinearOpBase<ScalarType> > OPT;

    //! @name Constructor/Destructor
    //@{

    //! Basic constructor.  Accepts reference-counted pointer to an Thyra_Operator.
    ThyraOp(const Teuchos::RCP<const Thyra::LinearOpBase<ScalarType> > &Op ) { Thyra_Op = Op; }

    //! Destructor
    ~ThyraOp() {}
    //@}

    //! @name Operator application method
    //@{

    /*! \brief This method takes the Anasazi::MultiVec \c X and
      applies the operator to it resulting in the Anasazi::MultiVec \c Y.
    */
    void Apply ( const MultiVec<ScalarType>& X, MultiVec<ScalarType>& Y ) const
    {
      const Anasazi::ThyraMultiVec<ScalarType>* vec_X = dynamic_cast<const Anasazi::ThyraMultiVec<ScalarType>* >(&X);
      Anasazi::ThyraMultiVec<ScalarType>* vec_Y = dynamic_cast<Anasazi::ThyraMultiVec<ScalarType>* >(&Y);
      OPT::Apply( *Thyra_Op, *(vec_X->getRCP()), *(vec_Y->getRCP()) );
    }

    //@}

  private:
    Teuchos::RCP<const Thyra::LinearOpBase<ScalarType> > Thyra_Op;
  };

} // end of Anasazi namespace

#endif
// end of file ANASAZI_THYRA_DEBUG_ADAPTER_HPP