This file is indexed.

/usr/include/trilinos/BelosOperator.hpp is in libtrilinos-belos-dev 12.10.1-3.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
//@HEADER
// ************************************************************************
//
//                 Belos: Block Linear Solvers Package
//                  Copyright 2004 Sandia Corporation
//
// Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation,
// the U.S. Government retains certain rights in this software.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// 1. Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//
// 2. Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
//
// 3. Neither the name of the Corporation nor the names of the
// contributors may be used to endorse or promote products derived from
// this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
// PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE
// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
// PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
// NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
// SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// Questions? Contact Michael A. Heroux (maherou@sandia.gov)
//
// ************************************************************************
//@HEADER

#ifndef BELOS_OPERATOR_HPP
#define BELOS_OPERATOR_HPP

/// \file BelosOperator.hpp
///
/// \brief Alternative run-time polymorphic interface for operators.

#include "BelosConfigDefs.hpp"
#include "BelosOperatorTraits.hpp"
#include "BelosMultiVec.hpp"
#ifdef HAVE_BELOS_EXPERIMENTAL
#  include "BelosInnerSolver.hpp"
#endif // HAVE_BELOS_EXPERIMENTAL


namespace Belos {

  /// \class Operator
  /// \brief Alternative run-time polymorphic interface for operators.
  /// \author Michael Heroux and Heidi Thornquist
  ///
  /// Belos' linear solvers are templated on the scalar (Scalar),
  /// multivector (MV), and operator (OP) types.  The term "operator"
  /// includes the matrix A in the linear system \f$AX = B\f$, any
  /// left or right preconditioners, and any left or right scaling
  /// operators.  If you have enabled the corresponding Trilinos
  /// packages, you can use Belos' solvers directly with OP =
  /// Epetra_Operator, Tpetra::Operator, or Thyra::LinearOpBase.
  /// Alternately, you may wish to use some other object as an
  /// operator.  If so, you can make that object inherit from
  /// Belos::Operator<Scalar>, and make its corresponding multivector
  /// objects inherit from Belos::MultiVec<Scalar>.  Belos' solvers
  /// may also be instantiated with MV = Belos::MultiVec<Scalar> and
  /// OP = Belos::Operator<Scalar>.
  ///
  /// A concrete implementation of this class is necessary.  Users may
  /// create their own implementation if the supplied implementations
  /// are not suitable for their needs.
  template <class ScalarType>
  class Operator {
  public:
    //! @name Constructor/Destructor
    //@{ 
    
    //! Default constructor (does nothing).
    Operator() {};
    
    //! Virtual destructor, for memory safety of derived classes.
    virtual ~Operator() {};
    //@}
    
    //! @name Methods relating to applying the operator
    //@{ 

    /// \brief Apply the operator to x, putting the result in y.
    ///
    /// Take the Belos::MultiVec \c x and apply the operator (or its
    /// transpose or Hermitian transpose) to it, writing the result
    /// into the Belos::MultiVec \c y.
    ///
    /// \param x [in] The input multivector.
    ///
    /// \param y [out] The output multivector.  x and y may not alias
    ///   (i.e., be views of) one another.
    ///
    /// \param trans [in] Whether to apply the operator (NOTRANS), its
    ///   transpose (TRANS), or its Hermitian transpose (CONJTRANS).
    ///   The default is NOTRANS.
    ///
    /// Your Operator subclass' implementation of Apply() is not
    /// required to support applying the transpose (or Hermitian
    /// transpose, if applicable).  If the caller passes in a value of
    /// \c trans which your Apply() implementation does not support,
    /// it should throw a subclass of std::exception.  In general,
    /// subclasses' implementations should signal any problems
    /// applying the operator by throwing a subclass of
    /// std::exception.
    virtual void 
    Apply (const MultiVec<ScalarType>& x, 
	   MultiVec<ScalarType>& y, 
	   ETrans trans=NOTRANS) const = 0;

    /// \brief Whether this operator implements applying the transpose.
    ///
    /// Your Operator subclass' implementation of Apply() is not
    /// required to support applying the transpose (or Hermitian
    /// transpose, if applicable).  If it <i>does</i> support applying
    /// the transpose, this method should return true.  Otherwise, it
    /// should return false.  
    ///
    /// We assume that if an operator can apply its transpose, it can
    /// also apply its Hermitian transpose, if the operator is complex
    /// (otherwise the transpose and Hermitian transpose are the same
    /// operation).
    ///
    /// We provide a default implementation of this method that
    /// conservatively returns false.  If you want your Operator
    /// subclass to advertise that it implements applying the
    /// transpose, override the default implementation in your
    /// subclass.
    virtual bool HasApplyTranspose () const {
      return false;
    }
    //@}
  };
  
  ////////////////////////////////////////////////////////////////////
  //
  // Implementation of the Belos::OperatorTraits for Belos::Operator 
  //                                               and Belos::MultiVec.
  //
  ////////////////////////////////////////////////////////////////////  
  
  /// \brief Specialization of OperatorTraits for Operator and MultiVec.
  ///
  /// This is a partial template specialization of
  /// Belos::OperatorTraits class using the Belos::Operator and
  /// Belos::MultiVec abstract interfaces.  Any class that inherits
  /// from Belos::Operator will be accepted by the Belos templated
  /// solvers, due to this specialization of Belos::OperatorTraits.
  template<class ScalarType> 
  class OperatorTraits<ScalarType, MultiVec<ScalarType>, Operator<ScalarType> > 
  {
  public:
    //! Specialization of Apply() for Operator and MultiVec objects.
    static void 
    Apply (const Operator<ScalarType>& Op, 
	   const MultiVec<ScalarType>& x, 
	   MultiVec<ScalarType>& y,
	   ETrans trans=NOTRANS)
    { 
      Op.Apply (x, y, trans); 
    }

    //! Specialization of HasApplyTranspose() for Operator objects.
    static bool
    HasApplyTranspose (const Operator<ScalarType>& Op)
    {
      return Op.HasApplyTranspose ();
    }
  };

#ifdef HAVE_BELOS_EXPERIMENTAL

  /// \class OperatorInnerSolver
  /// \brief Adaptor between InnerSolver and Belos::Operator.
  /// 
  /// This wrapper lets you use as a Belos::Operator any
  /// implementation of Belos::InnerSolver<Scalar, MV, OP> with MV =
  /// Belos::MultiVec<Scalar> and OP = Belos::Operator<Scalar>.  You
  /// may also treat this wrapper as an "envelope" by extracting the
  /// underlying InnerSolver object (which has a richer interface) and
  /// discarding the Belos::Operator wrapper.
  ///
  /// \warning This interface is experimental and therefore subject to
  ///   change or removal at any time.  Do not rely on the stability
  ///   of this interface.
  template<class Scalar>
  class OperatorInnerSolver : public Operator<Scalar> {
  public:
    typedef Scalar scalar_type;
    typedef MultiVec<Scalar> multivector_type;
    typedef Operator<Scalar> operator_type;
    typedef InnerSolver<scalar_type, multivector_type, operator_type> inner_solver_type;

    /// \brief Constructor.
    ///
    /// \param solver [in/out] The actual inner solver implementation.
    OperatorInnerSolver (const Teuchos::RCP<inner_solver_type>& solver) :
      solver_ (solver)
    {}
    //! Virtual destructor implementation, for correctness.
    virtual ~OperatorInnerSolver() {}

    /// \brief Return the underlying inner solver object.
    ///
    /// This breach of encapsulation makes this class into an
    /// "envelope."  First, the inner solver hides inside the
    /// Belos::Operator until it gets inside a Belos outer solver that
    /// recognizes the Belos::Operator as an OperatorInnerSolver.
    /// Then, the Belos outer solver can take the InnerSolver out of
    /// the "envelope," destroy the envelope (by setting its RCP to
    /// null) if it wants, and work directly with the InnerSolver.
    /// This is useful because InnerSolver's interface has the
    /// features necessary for algorithms like inexact Krylov and
    /// other inner-outer iterations, where the outer iteration is
    /// responsible for controlling the convergence tolerance and/or
    /// the cost of the inner iteration.
    ///
    /// \note This method is declared const in order to cheat
    ///   Belos::LinearProblem into letting the operator act like an
    ///   envelope.  It's technically correct to call this method
    ///   const, since it doesn't let the caller assign to the pointer
    ///   (even though it lets the caller call nonconst methods on the
    ///   InnerSolver).
    Teuchos::RCP<inner_solver_type> getInnerSolver() const {
      return solver_;
    }

    /// \brief Compute Y := alpha*solver(Y,X) + beta*Y.
    ///
    /// \note The contents of Y on input may be relevant, depending on
    ///   the inner solver implementation.  For example, Y on input
    ///   may be treated as the initial guess of an iterative solver.
    ///
    /// This function is virtual, in case you would like to override
    /// its default behavior of not implementing the transpose
    /// operation.
    virtual void 
    Apply (const multivector_type& X,
	   multivector_type& Y,
	   ETrans mode = NOTRANS) const
    {
      using Teuchos::rcpFromRef;

      TEUCHOS_TEST_FOR_EXCEPTION(mode != NOTRANS, std::invalid_argument,
			 "Belos::OperatorInnerSolver only supports applying the"
			 " operator itself, not its transpose or conjugate "
			 "transpose.");
      solver_->solve (rcpFromRef (Y), rcpFromRef (X));
    }

    /// \brief Whether this operator implements applying the transpose.
    /// 
    /// By default, we assume that it doesn't.  You may override this
    /// behavior in derived classes.
    virtual bool HasApplyTranspose() const {
      return false;
    }

  private:
    //! Default construction is not allowed.
    OperatorInnerSolver ();

    //! The inner solver implementation.
    Teuchos::RCP<inner_solver_type> solver_;
  };

  /// Specialization of makeInnerSolverOperator() for Belos::Operator.
  ///
  /// This class knows how to take an InnerSolver instance and wrap it
  /// in an implementation of the Belos::Operator interface.  That way
  /// you can use it alongside any other implementation of the
  /// Belos::Operator interface in any of the the Belos solvers.
  ///
  /// \warning This interface is experimental and therefore subject to
  ///   change or removal at any time.  Do not rely on the stability
  ///   of this interface.
  ///
  template <class Scalar>
  class InnerSolverTraits<Scalar, MultiVec<Scalar>, Operator<Scalar> > {
  public:
    typedef Scalar scalar_type;
    typedef MultiVec<scalar_type> multivector_type;
    typedef Operator<scalar_type> operator_type;
    typedef InnerSolver<scalar_type, multivector_type, operator_type> inner_solver_type;
    typedef OperatorInnerSolver<scalar_type> wrapper_type;

    /// \brief Wrap the given inner solver in a wrapper_type.
    ///
    /// The wrapper_type class implements the operator_type interface,
    /// which can be used directly in Belos.
    static Teuchos::RCP<operator_type>
    makeInnerSolverOperator (const Teuchos::RCP<inner_solver_type>& solver)
    {
      using Teuchos::rcp;
      using Teuchos::rcp_implicit_cast;
      return rcp_implicit_cast<operator_type> (rcp (new wrapper_type (solver)));
    }

    /// \brief Return the given wrapper's inner solver object.
    ///
    /// If op is an inner solver wrapper instance, return the inner
    /// solver object.  Otherwise, throw an std::bad_cast exception.
    ///
    /// \note The returned inner solver object will persist beyond the
    ///   scope of the input object.  Thus, if you don't care about
    ///   the wrapper that implements the operator_type interface, you
    ///   can get rid of the wrapper and keep the inner solver.
    static Teuchos::RCP<inner_solver_type>
    getInnerSolver (const Teuchos::RCP<operator_type>& op)
    {
      using Teuchos::RCP;
      using Teuchos::rcp_dynamic_cast;
      RCP<wrapper_type> wrapper = rcp_dynamic_cast<wrapper_type> (op, true);
      return wrapper->getInnerSolver();
    }
  };
#endif // HAVE_BELOS_EXPERIMENTAL
  
} // end Belos namespace

#endif

// end of file BelosOperator.hpp