/usr/include/trilinos/Epetra_FECrsMatrix.h is in libtrilinos-epetra-dev 12.10.1-3.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513 514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531 532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549 550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567 568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585 586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603 604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619 620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637 638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655 656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673 674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691 692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709 710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727 728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743 744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761 762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779 780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797 798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815 816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833 834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851 852 853 854 855 856 857 858 | /*
//@HEADER
// ************************************************************************
//
// Epetra: Linear Algebra Services Package
// Copyright 2011 Sandia Corporation
//
// Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation,
// the U.S. Government retains certain rights in this software.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// 1. Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//
// 2. Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
//
// 3. Neither the name of the Corporation nor the names of the
// contributors may be used to endorse or promote products derived from
// this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
// PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE
// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
// PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
// NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
// SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// Questions? Contact Michael A. Heroux (maherou@sandia.gov)
//
// ************************************************************************
//@HEADER
*/
#ifndef EPETRA_FECRSMATRIX_H
#define EPETRA_FECRSMATRIX_H
#include <Epetra_ConfigDefs.h>
#include <Epetra_CrsMatrix.h>
#include <Epetra_CombineMode.h>
#include <vector>
class Epetra_Map;
class Epetra_IntSerialDenseVector;
#ifndef EPETRA_NO_64BIT_GLOBAL_INDICES
class Epetra_LongLongSerialDenseVector;
#endif
class Epetra_SerialDenseMatrix;
class Epetra_FECrsGraph;
/** Epetra Finite-Element CrsMatrix. This class provides the ability to
input finite-element style sub-matrix data, including sub-matrices with
non-local rows (which could correspond to shared finite-element nodes for
example). This class inherits Epetra_CrsMatrix, and so all Epetra_CrsMatrix
functionality is also available.
It is intended that this class will be used as follows:
<ul>
<li> Construct with either a map or graph that describes a (non-overlapping)
data distribution.
<li> Input data, including non-local data, using the methods
InsertGlobalValues(), SumIntoGlobalValues() and/or ReplaceGlobalValues().
<li> Call the method GlobalAssemble(), which gathers all non-local data
onto the owning processors as determined by the map provided at
construction. Users should note that the GlobalAssemble() method has an
optional argument which determines whether GlobalAssemble() in turn calls
FillComplete() after the data-exchange has occurred. If not explicitly
supplied, this argument defaults to true.
***NOTE***: When GlobalAssemble() calls FillComplete(), it passes the
arguments 'DomainMap()' and 'RangeMap()', which are the map attributes
held by the base-class CrsMatrix and its graph. If a rectangular matrix
is being assembled, the correct domain-map and range-map must be passed to
GlobalAssemble (there are two overloadings of this method) -- otherwise, it
has no way of knowing what these maps should really be.
</ul>
Sub-matrix data, which is assumed to be a rectangular 'table' of
coefficients accompanied by 'scatter-indices', can be provided in three
forms:
<ul>
<li>Fortran-style packed 1-D array.
<li>C-style double-pointer, or list-of-rows.
<li>Epetra_SerialDenseMatrix object.
</ul>
In all cases, a "format" parameter specifies whether the data is laid out
in row-major or column-major order (i.e., whether coefficients for a row
lie contiguously or whether coefficients for a column lie contiguously).
See the documentation for the methods SumIntoGlobalValues() and
ReplaceGlobalValues().
Important notes:
<ol>
<li> Since Epetra_FECrsMatrix inherits Epetra_CrsMatrix, the semantics of
the Insert/SumInto/Replace methods are the same as they are on
Epetra_CrsMatrix, which is:
<ul>
<li>InsertGlobalValues() inserts values into the matrix only if the graph
has not yet been finalized (FillComplete() has not yet been called). For
non-local values, the call to InsertGlobalValues() may succeed but the
GlobalAssemble() method may then fail because the non-local data is not
actually inserted in the underlying matrix until GlobalAssemble() is called.
<li>SumIntoGlobalValues() and ReplaceGlobalValues() only work for values
that already exist in the matrix. In other words, these methods can not be
used to put new values into the matrix.
</ul>
</ol>
*/
class EPETRA_LIB_DLL_EXPORT Epetra_FECrsMatrix : public Epetra_CrsMatrix {
public:
/** Constructor. */
Epetra_FECrsMatrix(Epetra_DataAccess CV,
const Epetra_Map& RowMap,
int* NumEntriesPerRow,
bool ignoreNonLocalEntries=false);
/** Constructor. */
Epetra_FECrsMatrix(Epetra_DataAccess CV,
const Epetra_Map& RowMap,
int NumEntriesPerRow,
bool ignoreNonLocalEntries=false);
/** Constructor. */
Epetra_FECrsMatrix(Epetra_DataAccess CV,
const Epetra_Map& RowMap,
const Epetra_Map& ColMap,
int* NumEntriesPerRow,
bool ignoreNonLocalEntries=false);
/** Constructor. */
Epetra_FECrsMatrix(Epetra_DataAccess CV,
const Epetra_Map& RowMap,
const Epetra_Map& ColMap,
int NumEntriesPerRow,
bool ignoreNonLocalEntries=false);
/** Constructor. */
Epetra_FECrsMatrix(Epetra_DataAccess CV,
const Epetra_CrsGraph& Graph,
bool ignoreNonLocalEntries=false);
/** Constructor. */
Epetra_FECrsMatrix(Epetra_DataAccess CV,
const Epetra_FECrsGraph& Graph,
bool ignoreNonLocalEntries=false);
/** Copy Constructor. */
Epetra_FECrsMatrix(const Epetra_FECrsMatrix& src);
/** Destructor. */
virtual ~Epetra_FECrsMatrix();
/** Assignment operator */
Epetra_FECrsMatrix& operator=(const Epetra_FECrsMatrix& src);
enum { ROW_MAJOR = 0, COLUMN_MAJOR = 3 };
#if !defined(EPETRA_NO_32BIT_GLOBAL_INDICES) || !defined(EPETRA_NO_64BIT_GLOBAL_INDICES)
using Epetra_CrsMatrix::SumIntoGlobalValues;
using Epetra_CrsMatrix::InsertGlobalValues;
using Epetra_CrsMatrix::ReplaceGlobalValues;
#endif
/** override base-class Epetra_CrsMatrix::SumIntoGlobalValues method */
#ifndef EPETRA_NO_32BIT_GLOBAL_INDICES
int SumIntoGlobalValues(int GlobalRow, int NumEntries,
const double* Values, const int* Indices);
#endif
#ifndef EPETRA_NO_64BIT_GLOBAL_INDICES
int SumIntoGlobalValues(long long GlobalRow, int NumEntries,
const double* Values, const long long* Indices);
#endif
/** override base-class Epetra_CrsMatrix::InsertGlobalValues method */
#ifndef EPETRA_NO_32BIT_GLOBAL_INDICES
int InsertGlobalValues(int GlobalRow, int NumEntries,
const double* Values, const int* Indices);
#endif
#ifndef EPETRA_NO_64BIT_GLOBAL_INDICES
int InsertGlobalValues(long long GlobalRow, int NumEntries,
const double* Values, const long long* Indices);
#endif
/** override base-class Epetra_CrsMatrix::InsertGlobalValues method */
#ifndef EPETRA_NO_32BIT_GLOBAL_INDICES
int InsertGlobalValues(int GlobalRow, int NumEntries,
double* Values, int* Indices);
#endif
#ifndef EPETRA_NO_64BIT_GLOBAL_INDICES
int InsertGlobalValues(long long GlobalRow, int NumEntries,
double* Values, long long* Indices);
#endif
/** override base-class Epetra_CrsMatrix::ReplaceGlobalValues method */
#ifndef EPETRA_NO_32BIT_GLOBAL_INDICES
int ReplaceGlobalValues(int GlobalRow, int NumEntries,
const double* Values, const int* Indices);
#endif
#ifndef EPETRA_NO_64BIT_GLOBAL_INDICES
int ReplaceGlobalValues(long long GlobalRow, int NumEntries,
const double* Values, const long long* Indices);
#endif
/** Sum a Fortran-style table (single-dimensional packed-list) of
coefficients into the matrix, adding them to any coefficients that
may already exist at the specified row/column locations.
@param numIndices Number of rows (and columns) in the sub-matrix.
@param indices List of scatter-indices (rows and columns) for the
sub-matrix.
@param values List, length numIndices*numIndices. Square sub-matrix of
coefficients, packed in a 1-D array. Data is packed either contiguously
by row or by column, specified by the final parameter 'format'.
@param format Specifies whether the data in 'values' is packed in
column-major or row-major order. Valid values are
Epetra_FECrsMatrix::ROW_MAJOR or Epetra_FECrsMatrix::COLUMN_MAJOR. This
is an optional parameter, default value is COLUMN_MAJOR.
*/
#ifndef EPETRA_NO_32BIT_GLOBAL_INDICES
int SumIntoGlobalValues(int numIndices, const int* indices,
const double* values,
int format=Epetra_FECrsMatrix::COLUMN_MAJOR);
#endif
#ifndef EPETRA_NO_64BIT_GLOBAL_INDICES
int SumIntoGlobalValues(int numIndices, const long long* indices,
const double* values,
int format=Epetra_FECrsMatrix::COLUMN_MAJOR);
#endif
/** Sum a Fortran-style table (single-dimensional packed-list) of
coefficients into the matrix, adding them to any coefficients that
may already exist at the specified row/column locations.
@param numRows Number of rows in the sub-matrix.
@param rows List of row-numbers (scatter-indices) for the sub-matrix.
@param numCols Number of columns in the sub-matrix.
@param cols List of column-numbers (scatter-indices) for the sub-matrix.
@param values List, length numRows*numCols. Rectangular sub-matrix of
coefficients, packed in a 1-D array. Data is packed either contiguously
by row or by column, specified by the final parameter 'format'.
@param format Specifies whether the data in 'values' is packed in
column-major or row-major order. Valid values are
Epetra_FECrsMatrix::ROW_MAJOR or Epetra_FECrsMatrix::COLUMN_MAJOR. This
is an optional parameter, default value is COLUMN_MAJOR.
*/
#ifndef EPETRA_NO_32BIT_GLOBAL_INDICES
int SumIntoGlobalValues(int numRows, const int* rows,
int numCols, const int* cols,
const double* values,
int format=Epetra_FECrsMatrix::COLUMN_MAJOR);
#endif
#ifndef EPETRA_NO_64BIT_GLOBAL_INDICES
int SumIntoGlobalValues(int numRows, const long long* rows,
int numCols, const long long* cols,
const double* values,
int format=Epetra_FECrsMatrix::COLUMN_MAJOR);
#endif
/** Sum C-style table (double-pointer, or list of lists) of coefficients
into the matrix, adding them to any coefficients that
may already exist at the specified row/column locations.
@param numIndices Number of rows (and columns) in the sub-matrix.
@param indices List of scatter-indices (rows and columns) for the
sub-matrix.
@param values Square sub-matrix of coefficients, provided in a 2-D
array, or double-pointer.
@param format Specifies whether the data in 'values' is packed in
column-major or row-major order. Valid values are
Epetra_FECrsMatrix::ROW_MAJOR or Epetra_FECrsMatrix::COLUMN_MAJOR. This
is an optional parameter, default value is ROW_MAJOR.
*/
#ifndef EPETRA_NO_32BIT_GLOBAL_INDICES
int SumIntoGlobalValues(int numIndices, const int* indices,
const double* const* values,
int format=Epetra_FECrsMatrix::ROW_MAJOR);
#endif
#ifndef EPETRA_NO_64BIT_GLOBAL_INDICES
int SumIntoGlobalValues(int numIndices, const long long* indices,
const double* const* values,
int format=Epetra_FECrsMatrix::ROW_MAJOR);
#endif
/** Sum C-style table (double-pointer, or list of lists) of coefficients
into the matrix, adding them to any coefficients that
may already exist at the specified row/column locations.
@param numRows Number of rows in the sub-matrix.
@param rows List of row-numbers (scatter-indices) for the sub-matrix.
@param numCols Number of columns in the sub-matrix.
@param cols List of column-numbers (scatter-indices) for the sub-matrix.
@param values Rectangular sub-matrix of coefficients, provided in a 2-D
array, or double-pointer.
@param format Specifies whether the data in 'values' is packed in
column-major or row-major order. Valid values are
Epetra_FECrsMatrix::ROW_MAJOR or Epetra_FECrsMatrix::COLUMN_MAJOR. This
is an optional parameter, default value is ROW_MAJOR.
*/
#ifndef EPETRA_NO_32BIT_GLOBAL_INDICES
int SumIntoGlobalValues(int numRows, const int* rows,
int numCols, const int* cols,
const double* const* values,
int format=Epetra_FECrsMatrix::ROW_MAJOR);
#endif
#ifndef EPETRA_NO_64BIT_GLOBAL_INDICES
int SumIntoGlobalValues(int numRows, const long long* rows,
int numCols, const long long* cols,
const double* const* values,
int format=Epetra_FECrsMatrix::ROW_MAJOR);
#endif
/** Insert a Fortran-style table (single-dimensional packed-list) of
coefficients into the matrix.
@param numIndices Number of rows (and columns) in the sub-matrix.
@param indices List of scatter-indices (rows and columns) for the
sub-matrix.
@param values List, length numIndices*numIndices. Square sub-matrix of
coefficients, packed in a 1-D array. Data is packed either contiguously
by row or by column, specified by the final parameter 'format'.
@param format Specifies whether the data in 'values' is packed in
column-major or row-major order. Valid values are
Epetra_FECrsMatrix::ROW_MAJOR or Epetra_FECrsMatrix::COLUMN_MAJOR. This
is an optional parameter, default value is COLUMN_MAJOR.
*/
#ifndef EPETRA_NO_32BIT_GLOBAL_INDICES
int InsertGlobalValues(int numIndices, const int* indices,
const double* values,
int format=Epetra_FECrsMatrix::COLUMN_MAJOR);
#endif
#ifndef EPETRA_NO_64BIT_GLOBAL_INDICES
int InsertGlobalValues(int numIndices, const long long* indices,
const double* values,
int format=Epetra_FECrsMatrix::COLUMN_MAJOR);
#endif
/** Insert a Fortran-style table (single-dimensional packed-list) of
coefficients into the matrix.
@param numRows Number of rows in the sub-matrix.
@param rows List of row-numbers (scatter-indices) for the sub-matrix.
@param numCols Number of columns in the sub-matrix.
@param cols List of column-numbers (scatter-indices) for the sub-matrix.
@param values List, length numRows*numCols. Rectangular sub-matrix of
coefficients, packed in a 1-D array. Data is packed either contiguously
by row or by column, specified by the final parameter 'format'.
@param format Specifies whether the data in 'values' is packed in
column-major or row-major order. Valid values are
Epetra_FECrsMatrix::ROW_MAJOR or Epetra_FECrsMatrix::COLUMN_MAJOR. This
is an optional parameter, default value is COLUMN_MAJOR.
*/
#ifndef EPETRA_NO_32BIT_GLOBAL_INDICES
int InsertGlobalValues(int numRows, const int* rows,
int numCols, const int* cols,
const double* values,
int format=Epetra_FECrsMatrix::COLUMN_MAJOR);
#endif
#ifndef EPETRA_NO_64BIT_GLOBAL_INDICES
int InsertGlobalValues(int numRows, const long long* rows,
int numCols, const long long* cols,
const double* values,
int format=Epetra_FECrsMatrix::COLUMN_MAJOR);
#endif
/** Insert a C-style table (double-pointer, or list of lists) of coefficients
into the matrix.
@param numIndices Number of rows (and columns) in the sub-matrix.
@param indices List of scatter-indices (rows and columns) for the
sub-matrix.
@param values Square sub-matrix of coefficients, provided in a 2-D
array, or double-pointer.
@param format Specifies whether the data in 'values' is packed in
column-major or row-major order. Valid values are
Epetra_FECrsMatrix::ROW_MAJOR or Epetra_FECrsMatrix::COLUMN_MAJOR. This
is an optional parameter, default value is ROW_MAJOR.
*/
#ifndef EPETRA_NO_32BIT_GLOBAL_INDICES
int InsertGlobalValues(int numIndices, const int* indices,
const double* const* values,
int format=Epetra_FECrsMatrix::ROW_MAJOR);
#endif
#ifndef EPETRA_NO_64BIT_GLOBAL_INDICES
int InsertGlobalValues(int numIndices, const long long* indices,
const double* const* values,
int format=Epetra_FECrsMatrix::ROW_MAJOR);
#endif
/** Insert a C-style table (double-pointer, or list of lists) of coefficients
into the matrix.
@param numRows Number of rows in the sub-matrix.
@param rows List of row-numbers (scatter-indices) for the sub-matrix.
@param numCols Number of columns in the sub-matrix.
@param cols List of column-numbers (scatter-indices) for the sub-matrix.
@param values Rectangular sub-matrix of coefficients, provided in a 2-D
array, or double-pointer.
@param format Specifies whether the data in 'values' is packed in
column-major or row-major order. Valid values are
Epetra_FECrsMatrix::ROW_MAJOR or Epetra_FECrsMatrix::COLUMN_MAJOR. This
is an optional parameter, default value is ROW_MAJOR.
*/
#ifndef EPETRA_NO_32BIT_GLOBAL_INDICES
int InsertGlobalValues(int numRows, const int* rows,
int numCols, const int* cols,
const double* const* values,
int format=Epetra_FECrsMatrix::ROW_MAJOR);
#endif
#ifndef EPETRA_NO_64BIT_GLOBAL_INDICES
int InsertGlobalValues(int numRows, const long long* rows,
int numCols, const long long* cols,
const double* const* values,
int format=Epetra_FECrsMatrix::ROW_MAJOR);
#endif
/** Copy a Fortran-style table (single-dimensional packed-list) of
coefficients into the matrix, replacing any coefficients that
may already exist at the specified row/column locations.
@param numIndices Number of rows (and columns) in the sub-matrix.
@param indices List of scatter-indices (rows and columns) for the
sub-matrix.
@param values List, length numIndices*numIndices. Square sub-matrix of
coefficients, packed in a 1-D array. Data is packed either contiguously
by row or by column, specified by the final parameter 'format'.
@param format Specifies whether the data in 'values' is packed in
column-major or row-major order. Valid values are
Epetra_FECrsMatrix::ROW_MAJOR or Epetra_FECrsMatrix::COLUMN_MAJOR. This
is an optional parameter, default value is COLUMN_MAJOR.
*/
#ifndef EPETRA_NO_32BIT_GLOBAL_INDICES
int ReplaceGlobalValues(int numIndices, const int* indices,
const double* values,
int format=Epetra_FECrsMatrix::COLUMN_MAJOR);
#endif
#ifndef EPETRA_NO_64BIT_GLOBAL_INDICES
int ReplaceGlobalValues(int numIndices, const long long* indices,
const double* values,
int format=Epetra_FECrsMatrix::COLUMN_MAJOR);
#endif
/** Copy Fortran-style table (single-dimensional packed-list) of coefficients
into the matrix, replacing any coefficients that
may already exist at the specified row/column locations.
@param numRows Number of rows in the sub-matrix.
@param rows List of row-numbers (scatter-indices) for the sub-matrix.
@param numCols Number of columns in the sub-matrix.
@param cols List, of column-numbers
(scatter-indices) for the sub-matrix.
@param values List, length numRows*numCols. Rectangular sub-matrix of
coefficients, packed in a 1-D array. Data is packed either contiguously
by row or by column, specified by the final parameter 'format'.
@param format Specifies whether the data in 'values' is packed in
column-major or row-major order. Valid values are
Epetra_FECrsMatrix::ROW_MAJOR or Epetra_FECrsMatrix::COLUMN_MAJOR. This
is an optional parameter, default value is COLUMN_MAJOR.
*/
#ifndef EPETRA_NO_32BIT_GLOBAL_INDICES
int ReplaceGlobalValues(int numRows, const int* rows,
int numCols, const int* cols,
const double* values,
int format=Epetra_FECrsMatrix::COLUMN_MAJOR);
#endif
#ifndef EPETRA_NO_64BIT_GLOBAL_INDICES
int ReplaceGlobalValues(int numRows, const long long* rows,
int numCols, const long long* cols,
const double* values,
int format=Epetra_FECrsMatrix::COLUMN_MAJOR);
#endif
/** Copy C-style table (double-pointer, or list of lists) of coefficients
into the matrix, replacing any coefficients that
may already exist at the specified row/column locations.
@param numIndices Number of rows (and columns) in the sub-matrix.
@param indices List of scatter-indices (rows and columns) for the
sub-matrix.
@param values Square sub-matrix of coefficients, provided in a 2-D
array, or double-pointer.
@param format Specifies whether the data in 'values' is packed in
column-major or row-major order. Valid values are
Epetra_FECrsMatrix::ROW_MAJOR or Epetra_FECrsMatrix::COLUMN_MAJOR. This
is an optional parameter, default value is ROW_MAJOR.
*/
#ifndef EPETRA_NO_32BIT_GLOBAL_INDICES
int ReplaceGlobalValues(int numIndices, const int* indices,
const double* const* values,
int format=Epetra_FECrsMatrix::ROW_MAJOR);
#endif
#ifndef EPETRA_NO_64BIT_GLOBAL_INDICES
int ReplaceGlobalValues(int numIndices, const long long* indices,
const double* const* values,
int format=Epetra_FECrsMatrix::ROW_MAJOR);
#endif
/** Copy C-style table (double-pointer, or list of lists) of coefficients
into the matrix, replacing any coefficients that
may already exist at the specified row/column locations.
@param numRows Number of rows in the sub-matrix.
@param rows List of row-numbers (scatter-indices) for the sub-matrix.
@param numCols Number of columns in the sub-matrix.
@param cols List of column-numbers (scatter-indices) for the sub-matrix.
@param values Rectangular sub-matrix of coefficients, provided in a 2-D
array, or double-pointer.
@param format Specifies whether the data in 'values' is packed in
column-major or row-major order. Valid values are
Epetra_FECrsMatrix::ROW_MAJOR or Epetra_FECrsMatrix::COLUMN_MAJOR. This
is an optional parameter, default value is ROW_MAJOR.
*/
#ifndef EPETRA_NO_32BIT_GLOBAL_INDICES
int ReplaceGlobalValues(int numRows, const int* rows,
int numCols, const int* cols,
const double* const* values,
int format=Epetra_FECrsMatrix::ROW_MAJOR);
#endif
#ifndef EPETRA_NO_64BIT_GLOBAL_INDICES
int ReplaceGlobalValues(int numRows, const long long* rows,
int numCols, const long long* cols,
const double* const* values,
int format=Epetra_FECrsMatrix::ROW_MAJOR);
#endif
/** Sum a square structurally-symmetric sub-matrix into the global matrix.
For non-square sub-matrices, see the other overloading of this method.
@param indices List of scatter-indices. indices.Length() must be the same
as values.M() and values.N().
@param values Sub-matrix of coefficients. Must be square.
@param format Optional format specifier, defaults to COLUMN_MAJOR.
*/
#ifndef EPETRA_NO_32BIT_GLOBAL_INDICES
int SumIntoGlobalValues(const Epetra_IntSerialDenseVector& indices,
const Epetra_SerialDenseMatrix& values,
int format=Epetra_FECrsMatrix::COLUMN_MAJOR);
#endif
#ifndef EPETRA_NO_64BIT_GLOBAL_INDICES
int SumIntoGlobalValues(const Epetra_LongLongSerialDenseVector& indices,
const Epetra_SerialDenseMatrix& values,
int format=Epetra_FECrsMatrix::COLUMN_MAJOR);
#endif
/** Sum a general sub-matrix into the global matrix.
For square structurally-symmetric sub-matrices, see the other
overloading of this method.
@param rows List of row-indices. rows.Length() must be the same
as values.M().
@param cols List of column-indices. cols.Length() must be the same
as values.N().
@param values Sub-matrix of coefficients.
@param format Optional format specifier, defaults to COLUMN_MAJOR.
*/
#ifndef EPETRA_NO_32BIT_GLOBAL_INDICES
int SumIntoGlobalValues(const Epetra_IntSerialDenseVector& rows,
const Epetra_IntSerialDenseVector& cols,
const Epetra_SerialDenseMatrix& values,
int format=Epetra_FECrsMatrix::COLUMN_MAJOR);
#endif
#ifndef EPETRA_NO_64BIT_GLOBAL_INDICES
int SumIntoGlobalValues(const Epetra_LongLongSerialDenseVector& rows,
const Epetra_LongLongSerialDenseVector& cols,
const Epetra_SerialDenseMatrix& values,
int format=Epetra_FECrsMatrix::COLUMN_MAJOR);
#endif
/** Insert a square structurally-symmetric sub-matrix into the global matrix.
For non-square sub-matrices, see the other overloading of this method.
@param indices List of scatter-indices. indices.Length() must be the same
as values.M() and values.N().
@param values Sub-matrix of coefficients. Must be square.
@param format Optional format specifier, defaults to COLUMN_MAJOR.
*/
#ifndef EPETRA_NO_32BIT_GLOBAL_INDICES
int InsertGlobalValues(const Epetra_IntSerialDenseVector& indices,
const Epetra_SerialDenseMatrix& values,
int format=Epetra_FECrsMatrix::COLUMN_MAJOR);
#endif
#ifndef EPETRA_NO_64BIT_GLOBAL_INDICES
int InsertGlobalValues(const Epetra_LongLongSerialDenseVector& indices,
const Epetra_SerialDenseMatrix& values,
int format=Epetra_FECrsMatrix::COLUMN_MAJOR);
#endif
/** Insert a general sub-matrix into the global matrix.
For square structurally-symmetric sub-matrices, see the other
overloading of this method.
@param rows List of row-indices. rows.Length() must be the same
as values.M().
@param cols List of column-indices. cols.Length() must be the same
as values.N().
@param values Sub-matrix of coefficients.
@param format Optional format specifier, defaults to COLUMN_MAJOR.
*/
#ifndef EPETRA_NO_32BIT_GLOBAL_INDICES
int InsertGlobalValues(const Epetra_IntSerialDenseVector& rows,
const Epetra_IntSerialDenseVector& cols,
const Epetra_SerialDenseMatrix& values,
int format=Epetra_FECrsMatrix::COLUMN_MAJOR);
#endif
#ifndef EPETRA_NO_64BIT_GLOBAL_INDICES
int InsertGlobalValues(const Epetra_LongLongSerialDenseVector& rows,
const Epetra_LongLongSerialDenseVector& cols,
const Epetra_SerialDenseMatrix& values,
int format=Epetra_FECrsMatrix::COLUMN_MAJOR);
#endif
/** Use a square structurally-symmetric sub-matrix to replace existing
values in the global matrix.
For non-square sub-matrices, see the other overloading of this method.
@param indices List of scatter-indices. indices.Length() must be the same
as values.M() and values.N().
@param values Sub-matrix of coefficients. Must be square.
@param format Optional format specifier, defaults to COLUMN_MAJOR.
*/
#ifndef EPETRA_NO_32BIT_GLOBAL_INDICES
int ReplaceGlobalValues(const Epetra_IntSerialDenseVector& indices,
const Epetra_SerialDenseMatrix& values,
int format=Epetra_FECrsMatrix::COLUMN_MAJOR);
#endif
#ifndef EPETRA_NO_64BIT_GLOBAL_INDICES
int ReplaceGlobalValues(const Epetra_LongLongSerialDenseVector& indices,
const Epetra_SerialDenseMatrix& values,
int format=Epetra_FECrsMatrix::COLUMN_MAJOR);
#endif
/** Use a general sub-matrix to replace existing values.
For square structurally-symmetric sub-matrices, see the other
overloading of this method.
@param rows List of row-indices. rows.Length() must be the same
as values.M().
@param cols List of column-indices. cols.Length() must be the same
as values.N().
@param values Sub-matrix of coefficients.
@param format Optional format specifier, defaults to COLUMN_MAJOR.
*/
#ifndef EPETRA_NO_32BIT_GLOBAL_INDICES
int ReplaceGlobalValues(const Epetra_IntSerialDenseVector& rows,
const Epetra_IntSerialDenseVector& cols,
const Epetra_SerialDenseMatrix& values,
int format=Epetra_FECrsMatrix::COLUMN_MAJOR);
#endif
#ifndef EPETRA_NO_64BIT_GLOBAL_INDICES
int ReplaceGlobalValues(const Epetra_LongLongSerialDenseVector& rows,
const Epetra_LongLongSerialDenseVector& cols,
const Epetra_SerialDenseMatrix& values,
int format=Epetra_FECrsMatrix::COLUMN_MAJOR);
#endif
/** Gather any overlapping/shared data into the non-overlapping partitioning
defined by the Map that was passed to this matrix at construction time.
Data imported from other processors is stored on the owning processor
with a "sumInto" or accumulate operation.
This is a collective method -- every processor must enter it before any
will complete it.
***NOTE***: When GlobalAssemble() calls FillComplete(), it passes the
arguments 'DomainMap()' and 'RangeMap()', which are the map attributes
held by the base-class CrsMatrix and its graph. If a rectangular matrix
is being assembled, the domain-map and range-map must be specified by
calling the other overloading of this method. Otherwise, GlobalAssemble()
has no way of knowing what these maps should really be.
@param callFillComplete option argument, defaults to true.
Determines whether GlobalAssemble() internally calls the
FillComplete() method on this matrix.
@return error-code 0 if successful, non-zero if some error occurs
*/
int GlobalAssemble(bool callFillComplete=true,
Epetra_CombineMode combineMode=Add,
bool save_off_and_reuse_map_exporter=false);
/** Gather any overlapping/shared data into the non-overlapping partitioning
defined by the Map that was passed to this matrix at construction time.
Data imported from other processors is stored on the owning processor
with a "sumInto" or accumulate operation.
This is a collective method -- every processor must enter it before any
will complete it.
***NOTE***: When GlobalAssemble() (the other overloading of this method)
calls FillComplete(), it passes the arguments 'DomainMap()' and
'RangeMap()', which are the map attributes already held by the base-class
CrsMatrix and its graph. If a rectangular matrix is being assembled, the
domain-map and range-map must be specified. Otherwise, GlobalAssemble()
has no way of knowing what these maps should really be.
@param domain_map user-supplied domain map for this matrix
@param range_map user-supplied range map for this matrix
@param callFillComplete option argument, defaults to true.
Determines whether GlobalAssemble() internally calls the
FillComplete() method on this matrix.
@return error-code 0 if successful, non-zero if some error occurs
*/
int GlobalAssemble(const Epetra_Map& domain_map,
const Epetra_Map& range_map,
bool callFillComplete=true,
Epetra_CombineMode combineMode=Add,
bool save_off_and_reuse_map_exporter=false);
/** Set whether or not non-local data values should be ignored. By default,
non-local data values are NOT ignored.
*/
void setIgnoreNonLocalEntries(bool flag) {
ignoreNonLocalEntries_ = flag;
}
private:
void DeleteMemory();
enum {SUMINTO = 0, REPLACE = 1, INSERT = 2};
template<typename int_type>
int InputGlobalValues(int numRows, const int_type* rows,
int numCols, const int_type* cols,
const double* const* values,
int format,
int mode);
template<typename int_type>
int InputGlobalValues(int numRows, const int_type* rows,
int numCols, const int_type* cols,
const double* values,
int format,
int mode);
template<typename int_type>
int InputNonlocalGlobalValues(int_type row,
int numCols, const int_type* cols,
const double* values,
int mode);
template<typename int_type>
int InputGlobalValues_RowMajor(
int numRows, const int_type* rows,
int numCols, const int_type* cols,
const double* values,
int mode);
template<typename int_type>
int InsertNonlocalRow(int_type row, typename std::vector<int_type>::iterator offset);
template<typename int_type>
int InputNonlocalValue(int rowoffset,
int_type col, double value,
int mode);
long long myFirstRow_;
int myNumRows_;
bool ignoreNonLocalEntries_;
#ifndef EPETRA_NO_32BIT_GLOBAL_INDICES
std::vector<int> nonlocalRows_int_;
std::vector<std::vector<int> > nonlocalCols_int_;
#endif
#ifndef EPETRA_NO_64BIT_GLOBAL_INDICES
std::vector<long long> nonlocalRows_LL_;
std::vector<std::vector<long long> > nonlocalCols_LL_;
#endif
template<typename int_type> std::vector<int_type>& nonlocalRows();
template<typename int_type> std::vector<std::vector<int_type> >& nonlocalCols();
std::vector<std::vector<double> > nonlocalCoefs_;
//IMPORTANT NOTE: The use of class-member work-data arrays is
//**NOT** thread-safe.
std::vector<double> workData_;
std::vector<const double*> workData2d_;
int workDataLength_;
bool useNonlocalMatrix_;
Epetra_CrsMatrix* nonlocalMatrix_;
Epetra_Map* sourceMap_;
Epetra_Map* colMap_;
Epetra_Export* exporter_;
Epetra_CrsMatrix* tempMat_;
template<typename int_type>
int SumIntoGlobalValues(int_type GlobalRow, int NumEntries, const double* values, const int_type* Indices);
template<typename int_type>
int GlobalAssemble(const Epetra_Map& domain_map,
const Epetra_Map& range_map,
bool callFillComplete=true,
Epetra_CombineMode combineMode=Add,
bool save_off_and_reuse_map_exporter=false);
};//class Epetra_FECrsMatrix
#ifndef EPETRA_NO_32BIT_GLOBAL_INDICES
template<> inline std::vector<int>& Epetra_FECrsMatrix::nonlocalRows<int>()
{
return nonlocalRows_int_;
}
#endif
#ifndef EPETRA_NO_64BIT_GLOBAL_INDICES
template<> inline std::vector<long long>& Epetra_FECrsMatrix::nonlocalRows<long long>()
{
return nonlocalRows_LL_;
}
#endif
#ifndef EPETRA_NO_32BIT_GLOBAL_INDICES
template<> inline std::vector<std::vector<int> >& Epetra_FECrsMatrix::nonlocalCols<int>()
{
return nonlocalCols_int_;
}
#endif
#ifndef EPETRA_NO_64BIT_GLOBAL_INDICES
template<> inline std::vector<std::vector<long long> >& Epetra_FECrsMatrix::nonlocalCols<long long>()
{
return nonlocalCols_LL_;
}
#endif
#endif /* EPETRA_FECRSMATRIX_H */
|