/usr/include/trilinos/Galeri_MEDITInterface.h is in libtrilinos-galeri-dev 12.10.1-3.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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// ************************************************************************
//
// Galeri: Finite Element and Matrix Generation Package
// Copyright (2006) ETHZ/Sandia Corporation
//
// Under terms of Contract DE-AC04-94AL85000, there is a non-exclusive
// license for use of this work by or on behalf of the U.S. Government.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// 1. Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//
// 2. Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
//
// 3. Neither the name of the Corporation nor the names of the
// contributors may be used to endorse or promote products derived from
// this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
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//
// Questions about Galeri? Contact Marzio Sala (marzio.sala _AT_ gmail.com)
//
// ************************************************************************
// @HEADER
#ifndef GALERI_MEDIT
#define GALERI_MEDIT
#include <iostream>
#include <iomanip>
#include <limits>
#include "Epetra_Map.h"
#include "Epetra_MultiVector.h"
#include "Epetra_Import.h"
#include "Galeri_AbstractGrid.h"
namespace Galeri {
namespace FiniteElements {
class MEDITInterface
{
public:
MEDITInterface(Epetra_Comm& Comm) :
Comm_(Comm)
{}
~MEDITInterface() {}
const Epetra_Comm& Comm() const
{
return(Comm_);
}
void Write(const AbstractGrid& data, const std::string& BaseName,
const Epetra_MultiVector& Field)
{
///int zzz = data.NumMyVertices();
std::vector<double> coord(3);
std::vector<int> vertices(data.NumVerticesPerElement());
const Epetra_Map& RowMap = data.RowMap();
const Epetra_Map& VertexMap = data.VertexMap();
Epetra_MultiVector Coord(VertexMap, 3);
for (int i = 0 ; i < data.NumMyVertices() ; ++i)
{
data.VertexCoord(i, &coord[0]);
Coord[0][i] = coord[0];
Coord[1][i] = coord[1];
Coord[2][i] = coord[2];
}
int n = 0;
if (Field.Comm().MyPID() == 0) {
long long LLn = RowMap.NumGlobalElements64();
if(LLn > std::numeric_limits<int>::max())
{
cerr << "LLn out of int bound" << endl;
cerr << "File " << __FILE__ << ", line " << __LINE__ << endl;
throw(-1);
}
n = (int) LLn;
}
Epetra_Map SingleProcMap(-1, n, 0, Field.Comm());
Epetra_MultiVector SingleProcCoord(SingleProcMap, 3);
Epetra_MultiVector SingleProcField(SingleProcMap, 1);
Epetra_Import CoordImporter(SingleProcMap, VertexMap);
Epetra_Import FieldImporter(SingleProcMap, RowMap);
SingleProcCoord.Import(Coord, CoordImporter, Insert);
SingleProcField.Import(Field, FieldImporter, Insert);
if (Comm().MyPID() == 0)
{
std::string FileName = BaseName + ".mesh";
std::ofstream medit;
medit.open(FileName.c_str());
medit << "MeshVersionFormatted 1" << endl;
medit << "Dimension 3" << endl;
medit << "# mesh from ML/Trilinos" << endl << endl;
medit << "Vertices " << data.NumGlobalVertices() << endl;
switch (data.NumDimensions()) {
case 2:
for (int i = 0 ; i < SingleProcCoord.MyLength() ; ++i) {
medit << std::setw(12) << std::setiosflags(std::ios::showpoint)
<< std::setw(12) << SingleProcCoord[0][i] << " "
<< std::setw(12) << SingleProcCoord[1][i] << " 0.0 1" << std::endl;
}
break;
case 3:
for (int i = 0 ; i < SingleProcCoord.MyLength() ; ++i) {
medit << std::setw(12) << std::setiosflags(std::ios::showpoint)
<< std::setw(12) << SingleProcCoord[0][i] << " "
<< std::setw(12) << SingleProcCoord[1][i] << " "
<< std::setw(12) << SingleProcCoord[2][i] << " 1" << std::endl;
}
break;
default:
throw(-1);
}
medit.close();
}
Comm().Barrier();
for (int ProcID = 0 ; ProcID < Comm().NumProc() ; ++ProcID) {
if (Comm().MyPID() == ProcID) {
std::string FileName = BaseName + ".mesh";
std::ofstream medit(FileName.c_str(),std::ios::app);
if (ProcID == 0) {
std::string type = data.ElementType();
if (type == "GALERI_TRIANGLE")
medit << "Triangles " << data.NumGlobalElements() << endl;
else if (type == "GALERI_QUAD")
medit << "Quadrilaterals " << data.NumGlobalElements() << endl;
else if (type == "GALERI_TET")
medit << "Tetrahedra " << data.NumGlobalElements() << endl;
else if (type == "GALERI_HEX")
medit << "Hexahedra " << data.NumGlobalElements() << endl;
else
{
cerr << "Incorrect element type (" << type << ")" << endl;
throw(-1);
}
}
for (int i = 0 ; i < data.NumMyElements() ; ++i) {
data.ElementVertices(i, &vertices[0]);
for (int j = 0 ; j < data.NumVerticesPerElement() ; ++j)
medit << data.VertexMap().GID64(vertices[j]) + 1 << " ";
medit << Comm().MyPID() << endl;
}
if (ProcID == Comm().NumProc() - 1)
medit << endl << "End" << endl;
medit.close();
}
Comm().Barrier();
} // for Procs, write elements
// ======== //
// .bb file //
// ======== //
if (Comm().MyPID() == 0) {
std::string BBName = BaseName + ".bb";
std::ofstream bb;
bb.open(BBName.c_str());
bb << "3 1 " << data.NumGlobalVertices() << " 2" << endl;
for (int i = 0 ; i < SingleProcField.MyLength() ; ++i)
bb << std::setiosflags(std::ios::showpoint) << SingleProcField[0][i] << endl;
bb.close();
}
}
private:
const Epetra_Comm& Comm_;
};
} // namespace FiniteElements
} // namespace Galeri
#endif
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