This file is indexed.

/usr/include/trilinos/Ifpack2_OverlappingPartitioner_decl.hpp is in libtrilinos-ifpack2-dev 12.10.1-3.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
/*@HEADER
// ***********************************************************************
//
//       Ifpack2: Tempated Object-Oriented Algebraic Preconditioner Package
//                 Copyright (2009) Sandia Corporation
//
// Under terms of Contract DE-AC04-94AL85000, there is a non-exclusive
// license for use of this work by or on behalf of the U.S. Government.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// 1. Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//
// 2. Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
//
// 3. Neither the name of the Corporation nor the names of the
// contributors may be used to endorse or promote products derived from
// this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
// PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE
// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
// PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
// NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
// SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// Questions? Contact Michael A. Heroux (maherou@sandia.gov)
//
// ***********************************************************************
//@HEADER
*/

#ifndef IFPACK2_OVERLAPPINGPARTITIONER_DECL_HPP
#define IFPACK2_OVERLAPPINGPARTITIONER_DECL_HPP

#include "Ifpack2_ConfigDefs.hpp"
#include "Ifpack2_Partitioner.hpp"
#include "Tpetra_RowGraph.hpp"

namespace Ifpack2 {

/// \class OverlappingPartitioner
/// \brief Create overlapping partitions of a local graph.
/// \tparam GraphType Specialization of Tpetra::CrsGraph or
///   Tpetra::RowGraph.
///
/// This class enables the extension of nonoverlapping partitions to
/// an arbitrary amount of constant overlap.  "Overlap" here refers to the
/// overlap among the local parts, and not the overlap among the
/// processes.
///
/// For partitions with varying overlap, use UserPartitioner, which inherits
/// from OverlappingPartitioner.
///
/// Supported parameters are:
/// - "partitioner: local parts" (<tt>local_ordinal_type</tt>): the
///   number of local partitions.  Default is one (one local
///   partition, which means "do not partition locally").
/// - "partitioner: overlap" (int): the amount of overlap between
///   partitions.  Default is zero (no overlap).
///
/// This class implements common functionality for derived classes
/// like LinearPartitioner.  Graphs given as input to any derived
/// class must contain no singletons.  Usually, this means that the
/// graph is the graph of a Tpetra::RowMatrix that has been filtered
/// using SingletonFilter.
template<class GraphType>
class OverlappingPartitioner : public Partitioner<GraphType> {
public:
  typedef typename GraphType::local_ordinal_type local_ordinal_type;
  typedef typename GraphType::global_ordinal_type global_ordinal_type;
  typedef typename GraphType::node_type node_type;
  typedef Tpetra::RowGraph<local_ordinal_type, global_ordinal_type, node_type> row_graph_type;

  //! Constructor.
  OverlappingPartitioner (const Teuchos::RCP<const row_graph_type>& graph);

  //! Destructor.
  virtual ~OverlappingPartitioner();

  /// \brief Number of computed local partitions.
  ///
  /// This is a (signed) \c int because negative values are
  /// significant.  We can't use \c local_ordinal_type here, because
  /// that type may be either signed or unsigned.
  int numLocalParts () const;

  //! The number of levels of overlap.
  int overlappingLevel() const;

  /// \brief Local index of the nonoverlapping partition of the given row.
  ///
  /// \param MyRow [in] Local index of the row.
  local_ordinal_type operator () (const local_ordinal_type MyRow) const;

  //! Local index of the overlapping partition of the j-th vertex in partition i.
  local_ordinal_type
  operator () (const local_ordinal_type i, const local_ordinal_type j) const;

  //! the number of rows contained in the given partition.
  size_t numRowsInPart (const local_ordinal_type Part) const;

  //! Fill \c List with the local indices of the rows in the (overlapping) partition \c Part.
  void rowsInPart (const local_ordinal_type Part, Teuchos::ArrayRCP<local_ordinal_type>& List) const;

  //! A view of the local indices of the nonoverlapping partitions of each local row.
  virtual Teuchos::ArrayView<const local_ordinal_type> 
  nonOverlappingPartition () const;

  //! Set all the parameters for the partitioner.
  /*! The supported parameters are:
   * - \c "partitioner: overlap" (int, default = 0).
   * - \c "partitioner: local parts" (int, default = 1).
   * - \c "partitioner: print level" (bool, default = false).
   */
  virtual void setParameters (Teuchos::ParameterList& List);

  //! Set all the parameters for the partitioner.
  /*! This function is used by derived classes to set their own
   * parameters. These classes should not derive SetParameters(),
   * so that common parameters can be set just once.
   */
  virtual void setPartitionParameters (Teuchos::ParameterList& List) = 0;

  //! Computes the partitions. Returns 0 if successful.
  virtual void compute();

  //! Computes the partitions. Returns 0 if successful.
  virtual void computePartitions() = 0;

  //! Computes the partitions. Returns 0 if successful.
  virtual void computeOverlappingPartitions();
  
  //! Returns true if partitions have been computed successfully.
  virtual bool isComputed() const;

  //! Prints basic information on iostream. This function is used by operator<<.
  virtual std::ostream& print(std::ostream& os) const;

  //! @name Implementation of Teuchos::Describable 
  //@{

  /** \brief Return a simple one-line description of this object. */
  std::string description() const;

  //! Print the object with some verbosity level to an FancyOStream object. 
  void describe(Teuchos::FancyOStream &out, const Teuchos::EVerbosityLevel verbLevel=Teuchos::Describable::verbLevel_default) const;

  //@}
 
protected:

  /// \brief Number of local subgraphs.
  ///
  /// This is a (signed) \c int because negative values are
  /// significant.  We can't use \c local_ordinal_type here, because
  /// that type may be either signed or unsigned.
  int NumLocalParts_;

  /// \brief Mapping from local row to partition number.
  /// \c Partition_[i] contains the local index of the nonoverlapping
  /// partition to which local row i belongs.  If the application has
  /// explicitly defined \c Parts_, then \c Partition_ is unused.
  Teuchos::Array<local_ordinal_type> Partition_;

  /// \brief Mapping from partition to all local rows it contains.
  /// \c Parts_[i][j] is the local index of the j-th row contained in the
  /// (overlapping) partition i.
  Teuchos::Array<Teuchos::ArrayRCP<local_ordinal_type> > Parts_;

  //! The graph to be partitioned
  Teuchos::RCP<const row_graph_type> Graph_;

  //! Level of overlap.
  int OverlappingLevel_;

  //! If \c true,  the graph has been successfully partitioned.
  bool IsComputed_;

  //! If \c true, information are reported to stdout.
  bool verbose_;
}; // class Ifpack2::OverlappingPartitioner

}// namespace Ifpack2

#endif // IFPACK2_OVERLAPPINGPARTITIONER_DECL_HPP