This file is indexed.

/usr/include/trilinos/MueLu_DirectSolver_def.hpp is in libtrilinos-muelu-dev 12.10.1-3.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
// @HEADER
//
// ***********************************************************************
//
//        MueLu: A package for multigrid based preconditioning
//                  Copyright 2012 Sandia Corporation
//
// Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation,
// the U.S. Government retains certain rights in this software.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// 1. Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//
// 2. Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
//
// 3. Neither the name of the Corporation nor the names of the
// contributors may be used to endorse or promote products derived from
// this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
// PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE
// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
// PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
// NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
// SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// Questions? Contact
//                    Jonathan Hu       (jhu@sandia.gov)
//                    Andrey Prokopenko (aprokop@sandia.gov)
//                    Ray Tuminaro      (rstumin@sandia.gov)
//
// ***********************************************************************
//
// @HEADER
#ifndef MUELU_DIRECTSOLVER_DEF_HPP
#define MUELU_DIRECTSOLVER_DEF_HPP

#include <Xpetra_Utils.hpp>
#include <Xpetra_Matrix.hpp>

#include "MueLu_DirectSolver_decl.hpp"

#include "MueLu_Exceptions.hpp"
#include "MueLu_Level.hpp"

#include "MueLu_Amesos2Smoother.hpp"
#include "MueLu_AmesosSmoother.hpp"

namespace MueLu {

  template <class Scalar,class LocalOrdinal, class GlobalOrdinal, class Node>
  DirectSolver<Scalar, LocalOrdinal, GlobalOrdinal, Node>::DirectSolver(const std::string& type, const Teuchos::ParameterList& paramListIn)
    : type_(type) {
    // The original idea behind all smoothers was to use prototype pattern. However, it does not fully work of the dependencies
    // calculation. Particularly, we need to propagate DeclareInput to proper prototypes. Therefore, both TrilinosSmoother and
    // DirectSolver do not follow the pattern exactly.
    // The difference is that in order to propagate the calculation of dependencies, we need to call a DeclareInput on a
    // constructed object (or objects, as we have two different code branches for Epetra and Tpetra). The only place where we
    // could construct these objects is the constructor. Thus, we need to store RCPs, and both TrilinosSmoother and DirectSolver
    // obtain a state: they contain RCP to smoother prototypes.
    sEpetra_ = Teuchos::null;
    sTpetra_ = Teuchos::null;

    ParameterList paramList = paramListIn;

    // We want DirectSolver to be able to work with both Epetra and Tpetra objects, therefore we try to construct both
    // Amesos and Amesos2 solver prototypes. The construction really depends on configuration options.
    triedEpetra_ = triedTpetra_ = false;
#if defined(HAVE_MUELU_TPETRA) && defined(HAVE_MUELU_AMESOS2)
    try {
      sTpetra_ = rcp(new Amesos2Smoother(type_, paramList));
      TEUCHOS_TEST_FOR_EXCEPTION(sTpetra_.is_null(), Exceptions::RuntimeError, "Unable to construct Amesos2 direct solver");
    } catch (Exceptions::RuntimeError& e) {
      errorTpetra_ = e.what();
    } catch (Exceptions::BadCast& e) {
      errorTpetra_ = e.what();
    }
    triedTpetra_ = true;
#endif
#if defined(HAVE_MUELU_EPETRA) && defined(HAVE_MUELU_AMESOS)
    try {
      // GetAmesosSmoother masks the template argument matching, and simply throws if template arguments are incompatible with Epetra
      sEpetra_ = GetAmesosSmoother<SC,LO,GO,NO>(type_, paramList);
      TEUCHOS_TEST_FOR_EXCEPTION(sEpetra_.is_null(), Exceptions::RuntimeError, "Unable to construct Amesos direct solver");
    } catch (Exceptions::RuntimeError& e) {
      // AmesosSmoother throws if Scalar != double, LocalOrdinal != int, GlobalOrdinal != int
      errorEpetra_ = e.what();
    }
    triedEpetra_ = true;
#endif

    // Check if we were able to construct at least one solver. In many cases that's all we need, for instance if a user
    // simply wants to use Tpetra only stack, never enables Amesos, and always runs Tpetra objects.
    TEUCHOS_TEST_FOR_EXCEPTION(!triedEpetra_ && !triedTpetra_, Exceptions::RuntimeError, "Unable to construct any direct solver."
                               "Plase enable (TPETRA and AMESOS2) or (EPETRA and AMESOS)");

    TEUCHOS_TEST_FOR_EXCEPTION(sEpetra_.is_null() && sTpetra_.is_null(), Exceptions::RuntimeError,
        "Could not enable any direct solver:\n"
        << (triedEpetra_ ? "Epetra mode was disabled due to an error:\n" : "")
        << (triedEpetra_ ? errorEpetra_ : "")
        << (triedTpetra_ ? "Tpetra mode was disabled due to an error:\n" : "")
        << (triedTpetra_ ? errorTpetra_ : ""));

    this->SetParameterList(paramList);
  }

  template <class Scalar,class LocalOrdinal, class GlobalOrdinal, class Node>
  void DirectSolver<Scalar, LocalOrdinal, GlobalOrdinal, Node>::SetFactory(const std::string& varName, const RCP<const FactoryBase>& factory) {
    // We need to propagate SetFactory to proper place
    if (!sEpetra_.is_null()) sEpetra_->SetFactory(varName, factory);
    if (!sTpetra_.is_null()) sTpetra_->SetFactory(varName, factory);
  }

  template <class Scalar,class LocalOrdinal, class GlobalOrdinal, class Node>
  void DirectSolver<Scalar, LocalOrdinal, GlobalOrdinal, Node>::DeclareInput(Level& currentLevel) const {
    // Decide whether we are running in Epetra or Tpetra mode
    //
    // Theoretically, we could make this decision in the constructor, and create only
    // one of the smoothers. But we want to be able to reuse, so one can imagine a scenario
    // where one first runs hierarchy with tpetra matrix, and then with epetra.
    bool useTpetra = (currentLevel.lib() == Xpetra::UseTpetra);
    s_ = (useTpetra ? sTpetra_ : sEpetra_);
    if (s_.is_null()) {
      if (useTpetra) {
#if not defined(HAVE_MUELU_AMESOS2)
        TEUCHOS_TEST_FOR_EXCEPTION(true, Exceptions::RuntimeError,
            "Error: running in Tpetra mode, but MueLu with Amesos2 was disabled during the configure stage.\n"
            "Please make sure that:\n"
            "  - Amesos2 is enabled (Trilinos_ENABLE_Amesos2=ON),\n"
            "  - Amesos2 is available for MueLu to use (MueLu_ENABLE_Amesos2=ON)\n");
#else
        if (triedTpetra_)
          this->GetOStream(Errors) << "Tpetra mode was disabled due to an error:\n" << errorTpetra_ << std::endl;
#endif
      }
      if (!useTpetra) {
#if not defined(HAVE_MUELU_AMESOS)
        TEUCHOS_TEST_FOR_EXCEPTION(true, Exceptions::RuntimeError,
            "Error: running in Epetra mode, but MueLu with Amesos was disabled during the configure stage.\n"
            "Please make sure that:\n"
            "  - Amesos is enabled (you can do that with Trilinos_ENABLE_Amesos=ON),\n"
            "  - Amesos is available for MueLu to use (MueLu_ENABLE_Amesos=ON)\n");
#else
        if (triedEpetra_)
          this->GetOStream(Errors) << "Epetra mode was disabled due to an error:\n" << errorEpetra_ << std::endl;
#endif
      }
      TEUCHOS_TEST_FOR_EXCEPTION(true, Exceptions::RuntimeError,
          "Direct solver for " << (useTpetra ? "Tpetra" : "Epetra") << " was not constructed");
    }

    s_->DeclareInput(currentLevel);
  }

  template <class Scalar,class LocalOrdinal, class GlobalOrdinal, class Node>
  void DirectSolver<Scalar, LocalOrdinal, GlobalOrdinal, Node>::Setup(Level& currentLevel) {
    if (SmootherPrototype::IsSetup() == true)
      this->GetOStream(Warnings0) << "MueLu::DirectSolver::Setup(): Setup() has already been called" << std::endl;

    int oldRank = s_->SetProcRankVerbose(this->GetProcRankVerbose());

    s_->Setup(currentLevel);

    s_->SetProcRankVerbose(oldRank);

    SmootherPrototype::IsSetup(true);

    this->SetParameterList(s_->GetParameterList());
  }

  template <class Scalar,class LocalOrdinal, class GlobalOrdinal, class Node>
  void DirectSolver<Scalar, LocalOrdinal, GlobalOrdinal, Node>::Apply(MultiVector& X, const MultiVector& B, bool InitialGuessIsZero) const {
    TEUCHOS_TEST_FOR_EXCEPTION(SmootherPrototype::IsSetup() == false, Exceptions::RuntimeError, "MueLu::AmesosSmoother::Apply(): Setup() has not been called");

    s_->Apply(X, B, InitialGuessIsZero);
  }

  template <class Scalar,class LocalOrdinal, class GlobalOrdinal, class Node>
  RCP<MueLu::SmootherPrototype<Scalar, LocalOrdinal, GlobalOrdinal, Node> > DirectSolver<Scalar, LocalOrdinal, GlobalOrdinal, Node>::Copy() const {
    RCP<DirectSolver> newSmoo =  rcp(new DirectSolver(*this));

    // We need to be quite careful with Copy
    // We still want DirectSolver to follow Prototype Pattern, so we need to hide the fact that we do have some state
    if (!sEpetra_.is_null())
      newSmoo->sEpetra_ = sEpetra_->Copy();
    if (!sTpetra_.is_null())
      newSmoo->sTpetra_ = sTpetra_->Copy();

    // Copy the default mode
    newSmoo->s_ = (s_.get() == sTpetra_.get() ? newSmoo->sTpetra_ : newSmoo->sEpetra_);
    newSmoo->SetParameterList(this->GetParameterList());

    return newSmoo;
  }

  template <class Scalar,class LocalOrdinal, class GlobalOrdinal, class Node>
  std::string DirectSolver<Scalar, LocalOrdinal, GlobalOrdinal, Node>::description() const {
    std::ostringstream out;
    if (s_ != Teuchos::null) {
      out << s_->description();
    } else {
      out << SmootherPrototype::description();
      out << "{type = " << type_ << "}";
    }
    return out.str();
  }

  template <class Scalar,class LocalOrdinal, class GlobalOrdinal, class Node>
  void DirectSolver<Scalar, LocalOrdinal, GlobalOrdinal, Node>::print(Teuchos::FancyOStream& out, const VerbLevel verbLevel) const {
    MUELU_DESCRIBE;

    if (verbLevel & Parameters0)
      out0 << "Prec. type: " << type_ << std::endl;

    if (verbLevel & Parameters1) {
      out0 << "Parameter list: " << std::endl;
      Teuchos::OSTab tab3(out);
      out << this->GetParameterList();
    }

    if (verbLevel & Debug)
      out0 << "IsSetup: " << Teuchos::toString(SmootherPrototype::IsSetup()) << std::endl;
  }

} // namespace MueLu

#endif // MUELU_DIRECTSOLVER_DEF_HPP