/usr/include/trilinos/MueLu_ZoltanInterface_decl.hpp is in libtrilinos-muelu-dev 12.10.1-3.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 | // @HEADER
//
// ***********************************************************************
//
// MueLu: A package for multigrid based preconditioning
// Copyright 2012 Sandia Corporation
//
// Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation,
// the U.S. Government retains certain rights in this software.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// 1. Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//
// 2. Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
//
// 3. Neither the name of the Corporation nor the names of the
// contributors may be used to endorse or promote products derived from
// this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
// PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE
// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
// PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
// NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
// SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// Questions? Contact
// Jonathan Hu (jhu@sandia.gov)
// Andrey Prokopenko (aprokop@sandia.gov)
// Ray Tuminaro (rstumin@sandia.gov)
//
// ***********************************************************************
//
// @HEADER
#ifndef MUELU_ZOLTANINTERFACE_DECL_HPP
#define MUELU_ZOLTANINTERFACE_DECL_HPP
#include "MueLu_ConfigDefs.hpp"
#if defined(HAVE_MUELU_ZOLTAN) && defined(HAVE_MPI)
#include <zoltan_cpp.h>
#include <Xpetra_Matrix.hpp>
#include <Xpetra_VectorFactory.hpp>
#include "MueLu_SingleLevelFactoryBase.hpp"
#include "MueLu_ZoltanInterface_fwd.hpp"
#include "MueLu_Level_fwd.hpp"
#include "MueLu_FactoryBase_fwd.hpp"
#include "MueLu_Utilities_fwd.hpp"
namespace MueLu {
/*!
@class ZoltanInterface
@brief Interface to Zoltan library.
@ingroup Rebalancing
This interface provides access to partitioning methods in Zoltan.
Currently, it supports the RCB algorithm only.
## Input/output of ZoltanInterface ##
### User parameters of ZoltanInterface ###
Parameter | type | default | master.xml | validated | requested | description
----------|------|---------|:----------:|:---------:|:---------:|------------
| A | Factory | null | | * | * | Generating factory of the matrix A used during the prolongator smoothing process |
| Coordinates | Factory | null | | * | * | Factory generating coordinates vector used for rebalancing (RCB algorithm)
| number of partitions | GO | - | | | | Short-cut parameter set by RepartitionFactory. Avoid repartitioning algorithms if only one partition is necessary (see details below)
The * in the @c master.xml column denotes that the parameter is defined in the @c master.xml file.<br>
The * in the @c validated column means that the parameter is declared in the list of valid input parameters (see ZoltanInterface::GetValidParameters).<br>
The * in the @c requested column states that the data is requested as input with all dependencies (see ZoltanInterface::DeclareInput).
### Variables provided by ZoltanInterface ###
After ZoltanInterface::Build the following data is available (if requested)
Parameter | generated by | description
----------|--------------|------------
| Partition | ZoltanInterface | GOVector based on the Row map of A (DOF-based) containing the process id the DOF should be living in after rebalancing/repartitioning
The "Partition" vector is used as input for the RepartitionFactory class.
If Re-partitioning/rebalancing is necessary it uses the "Partition" variable to create the corresponding Xpetra::Import object which then is used
by the RebalanceFactory classes (e.g., RebalanceAcFactory, RebalanceTransferFactory,...) to rebalance the coarse level operators.
The RepartitionHeuristicFactory calculates how many partitions are to be built when performing rebalancing.
It stores the result in the "number of partitions" variable on the current level (type = GO).
If it is "number of partitions=1" we skip the Zoltan call and just create an dummy "Partition" vector containing zeros only.
If no repartitioning is necessary (i.e., just keep the current partitioning) we return "Partition = Teuchos::null".
If "number of partitions" > 1, the algorithm tries to find the requested number of partitions.
@note: The ZoltanInterface class does not have all the features availabe in the Zoltan2Interface class
*/
//FIXME: this class should not be templated
template <class Scalar,
class LocalOrdinal = typename Xpetra::Matrix<double>::local_ordinal_type,
class GlobalOrdinal = typename Xpetra::Matrix<double, LocalOrdinal>::global_ordinal_type,
class Node = typename Xpetra::Matrix<double, LocalOrdinal, GlobalOrdinal>::node_type>
class ZoltanInterface : public SingleLevelFactoryBase {
#undef MUELU_ZOLTANINTERFACE_SHORT
#include "MueLu_UseShortNames.hpp"
public:
//! @name Constructors/Destructors
//@{
//! Constructor
ZoltanInterface() {}
//! Destructor
virtual ~ZoltanInterface() { }
//@}
RCP<const ParameterList> GetValidParameterList() const;
//! @name Input
//@{
void DeclareInput(Level& level) const;
//@}
//! @name Build methods.
//@{
void Build(Level& level) const;
//@}
//! @name Query methods (really functions) required by Zoltan.
//@{
/*! Callback function that returns the local number of objects. Required by Zoltan.
In this case, the number of objects is the number of local rows.
@param data (in) void pointer to an Xpetra::Matrix.
@param ierr (out) error code.
*/
static int GetLocalNumberOfRows(void *data, int *ierr);
/*! Callback function that returns the local number of nonzeros in the matrix. Required by Zoltan.
FIXME: Note that this will not work properly for non-point matrices.
@param data (in) void pointer to an Xpetra::Matrix
@param weights (out) array whose <tt>i</tt><sup>th</sup> entry is the number of nonzeros in local row \c i.
@param ierr (out) error code
*/
static void GetLocalNumberOfNonzeros(void *data, int NumGidEntries, int NumLidEntries, ZOLTAN_ID_PTR gids,
ZOLTAN_ID_PTR lids, int wgtDim, float *weights, int *ierr);
/*! Callback function that returns the problem dimension. Required by Zoltan.
@param data (in) void pointer to integer dimension
@param ierr (out) error code
*/
static int GetProblemDimension(void *data, int *ierr);
/*! Callback function that returns the problem dimension. Required by Zoltan.
@param data (in) void pointer to Xpetra::MultiVector.
@param coordinates (out) array of double coordinates, arranged like so: [x1 y1 z1 x2 y2 z2 ...].
@param ierr (out) error code
TODO -- should I return a view of the coordinates instead of copying them?
*/
static void GetProblemGeometry(void *data, int numGIDEntries, int numLIDEntries, int numObjectIDs,
ZOLTAN_ID_PTR gids, ZOLTAN_ID_PTR lids, int dim, double *coordinates, int *ierr);
//@}
private:
static ArrayRCP<double> coalesceCoordinates(ArrayRCP<double> coord, LocalOrdinal blksize);
}; //class ZoltanInterface
} //namespace MueLu
#define MUELU_ZOLTANINTERFACE_SHORT
#endif //if defined(HAVE_MUELU_ZOLTAN) && defined(HAVE_MPI)
#endif // MUELU_ZOLTANINTERFACE_DECL_HPP
|