libtrilinos-muelu-dev 12.10.1-3 / usr / include / trilinos / MueLu_ZoltanInterface_def.hpp

// @HEADER
//
// ***********************************************************************
//
//        MueLu: A package for multigrid based preconditioning
//                  Copyright 2012 Sandia Corporation
//
// Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation,
// the U.S. Government retains certain rights in this software.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// 1. Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//
// 2. Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
//
// 3. Neither the name of the Corporation nor the names of the
// contributors may be used to endorse or promote products derived from
// this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
// PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE
// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
// PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
// NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
// SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// Questions? Contact
//                    Jonathan Hu       (jhu@sandia.gov)
//                    Andrey Prokopenko (aprokop@sandia.gov)
//                    Ray Tuminaro      (rstumin@sandia.gov)
//
// ***********************************************************************
//
// @HEADER
#ifndef MUELU_ZOLTANINTERFACE_DEF_HPP
#define MUELU_ZOLTANINTERFACE_DEF_HPP

#include "MueLu_ZoltanInterface_decl.hpp"
#if defined(HAVE_MUELU_ZOLTAN) && defined(HAVE_MPI)

#include <Teuchos_Utils.hpp>
#include <Teuchos_DefaultMpiComm.hpp> //TODO: fwd decl.
#include <Teuchos_OpaqueWrapper.hpp>  //TODO: fwd decl.

#include "MueLu_Level.hpp"
#include "MueLu_Exceptions.hpp"
#include "MueLu_Monitor.hpp"
#include "MueLu_Utilities.hpp"

namespace MueLu {

 template <class Scalar, class LocalOrdinal, class GlobalOrdinal, class Node>
 RCP<const ParameterList> ZoltanInterface<Scalar, LocalOrdinal, GlobalOrdinal, Node>::GetValidParameterList() const {
    RCP<ParameterList> validParamList = rcp(new ParameterList());

    validParamList->set< RCP<const FactoryBase> >("A",           Teuchos::null, "Factory of the matrix A");
    validParamList->set< RCP<const FactoryBase> >("number of partitions", Teuchos::null, "Instance of RepartitionHeuristicFactory.");
    validParamList->set< RCP<const FactoryBase> >("Coordinates", Teuchos::null, "Factory of the coordinates");

    return validParamList;
  }


  template <class Scalar, class LocalOrdinal, class GlobalOrdinal, class Node>
  void ZoltanInterface<Scalar, LocalOrdinal, GlobalOrdinal, Node>::DeclareInput(Level& currentLevel) const {
    Input(currentLevel, "A");
    Input(currentLevel, "number of partitions");
    Input(currentLevel, "Coordinates");
  }

  template <class Scalar, class LocalOrdinal, class GlobalOrdinal, class Node>
  void ZoltanInterface<Scalar, LocalOrdinal, GlobalOrdinal, Node>::Build(Level& level) const {
    FactoryMonitor m(*this, "Build", level);

    RCP<Matrix>      A        = Get< RCP<Matrix> >     (level, "A");
    RCP<const Map>   rowMap   = A->getRowMap();

    typedef Xpetra::MultiVector<double, LocalOrdinal, GlobalOrdinal, Node> double_multivector_type;
    RCP<double_multivector_type> Coords   = Get< RCP<double_multivector_type> >(level, "Coordinates");
    size_t           dim      = Coords->getNumVectors();

    int numParts = Get<int>(level, "number of partitions");

    if (numParts == 1) {
      // Running on one processor, so decomposition is the trivial one, all zeros.
      RCP<Xpetra::Vector<GO, LO, GO, NO> > decomposition = Xpetra::VectorFactory<GO, LO, GO, NO>::Build(rowMap, true);
      Set(level, "Partition", decomposition);
      return;
    } else if (numParts == -1) {
      // No repartitioning
      RCP<Xpetra::Vector<GO,LO,GO,NO> > decomposition = Teuchos::null;
      Set(level, "Partition", decomposition);
      return;
    }

    float zoltanVersion_;
    Zoltan_Initialize(0, NULL, &zoltanVersion_);

    RCP<const Teuchos::MpiComm<int> >            dupMpiComm = rcp_dynamic_cast<const Teuchos::MpiComm<int> >(rowMap->getComm()->duplicate());
    RCP<const Teuchos::OpaqueWrapper<MPI_Comm> > zoltanComm = dupMpiComm->getRawMpiComm();

    RCP<Zoltan> zoltanObj_ = rcp(new Zoltan((*zoltanComm)()));  //extract the underlying MPI_Comm handle and create a Zoltan object
    if (zoltanObj_ == Teuchos::null)
      throw Exceptions::RuntimeError("MueLu::Zoltan : Unable to create Zoltan data structure");

    // Tell Zoltan what kind of local/global IDs we will use.
    // In our case, each GID is two ints and there are no local ids.
    // One can skip this step if the IDs are just single ints.
    int rv;
    if ((rv = zoltanObj_->Set_Param("num_gid_entries", "1")) != ZOLTAN_OK)
      throw Exceptions::RuntimeError("MueLu::Zoltan::Setup : setting parameter 'num_gid_entries' returned error code " + Teuchos::toString(rv));
    if ((rv = zoltanObj_->Set_Param("num_lid_entries", "0") ) != ZOLTAN_OK)
      throw Exceptions::RuntimeError("MueLu::Zoltan::Setup : setting parameter 'num_lid_entries' returned error code " + Teuchos::toString(rv));
    if ((rv = zoltanObj_->Set_Param("obj_weight_dim", "1") ) != ZOLTAN_OK)
      throw Exceptions::RuntimeError("MueLu::Zoltan::Setup : setting parameter 'obj_weight_dim' returned error code "  + Teuchos::toString(rv));

    if (GetVerbLevel() & Statistics1) zoltanObj_->Set_Param("debug_level", "1");
    else                              zoltanObj_->Set_Param("debug_level", "0");

    zoltanObj_->Set_Param("num_global_partitions", toString(numParts));

    zoltanObj_->Set_Num_Obj_Fn(GetLocalNumberOfRows,      (void *) &*A);
    zoltanObj_->Set_Obj_List_Fn(GetLocalNumberOfNonzeros, (void *) &*A);
    zoltanObj_->Set_Num_Geom_Fn(GetProblemDimension,      (void *) &dim);
    zoltanObj_->Set_Geom_Multi_Fn(GetProblemGeometry,     (void *) Coords.get());

    // Data pointers that Zoltan requires.
    ZOLTAN_ID_PTR import_gids = NULL;  // Global nums of objs to be imported
    ZOLTAN_ID_PTR import_lids = NULL;  // Local indices to objs to be imported
    int   *import_procs       = NULL;  // Proc IDs of procs owning objs to be imported.
    int   *import_to_part     = NULL;  // Partition #s to which imported objs should be assigned.
    ZOLTAN_ID_PTR export_gids = NULL;  // Global nums of objs to be exported
    ZOLTAN_ID_PTR export_lids = NULL;  // local indices to objs to be exported
    int   *export_procs       = NULL;  // Proc IDs of destination procs for objs to be exported.
    int   *export_to_part     = NULL;  // Partition #s for objs to be exported.
    int   num_imported;                // Number of objs to be imported.
    int   num_exported;                // Number of objs to be exported.
    int   newDecomp;                   // Flag indicating whether the decomposition has changed
    int   num_gid_entries;             // Number of array entries in a global ID.
    int   num_lid_entries;

    {
      SubFactoryMonitor m1(*this, "Zoltan RCB", level);
      rv = zoltanObj_->LB_Partition(newDecomp, num_gid_entries, num_lid_entries,
                                    num_imported, import_gids, import_lids, import_procs, import_to_part,
                                    num_exported, export_gids, export_lids, export_procs, export_to_part);
      if (rv == ZOLTAN_FATAL)
        throw Exceptions::RuntimeError("Zoltan::LB_Partition() returned error code");
    }

    // TODO check that A's row map is 1-1.  Zoltan requires this.

    RCP<Xpetra::Vector<GO, LO, GO, NO> > decomposition;
    if (newDecomp) {
      decomposition = Xpetra::VectorFactory<GO, LO, GO, NO>::Build(rowMap, false); // Don't initialize, will be overwritten
      ArrayRCP<GO> decompEntries = decomposition->getDataNonConst(0);

      int mypid = rowMap->getComm()->getRank();
      for (typename ArrayRCP<GO>::iterator i = decompEntries.begin(); i != decompEntries.end(); ++i)
        *i = mypid;

      LO blockSize = A->GetFixedBlockSize();
      for (int i = 0; i < num_exported; ++i) {
        // We have assigned Zoltan gids to first row GID in the block
        // NOTE: Zoltan GIDs are different from GIDs in the Coordinates vector
        LO  localEl = rowMap->getLocalElement(export_gids[i]);
        int partNum = export_to_part[i];
        for (LO j = 0; j < blockSize; ++j)
          decompEntries[localEl + j] = partNum;
      }
    }

    Set(level, "Partition", decomposition);

    zoltanObj_->LB_Free_Part(&import_gids, &import_lids, &import_procs, &import_to_part);
    zoltanObj_->LB_Free_Part(&export_gids, &export_lids, &export_procs, &export_to_part);

  } //Build()

  //-------------------------------------------------------------------------------------------------------------
  // GetLocalNumberOfRows
  //-------------------------------------------------------------------------------------------------------------

  template <class Scalar, class LocalOrdinal, class GlobalOrdinal, class Node>
  int ZoltanInterface<Scalar, LocalOrdinal, GlobalOrdinal, Node>::GetLocalNumberOfRows(void *data, int *ierr) {
    if (data == NULL) {
      *ierr = ZOLTAN_FATAL;
      return -1;
    }
    Matrix *A = (Matrix*) data;
    *ierr = ZOLTAN_OK;

    LO blockSize = A->GetFixedBlockSize();
    TEUCHOS_TEST_FOR_EXCEPTION(blockSize == 0, Exceptions::RuntimeError, "MueLu::Zoltan : Matrix has block size 0.");

    return A->getRowMap()->getNodeNumElements() / blockSize;
  } //GetLocalNumberOfRows()

  //-------------------------------------------------------------------------------------------------------------
  // GetLocalNumberOfNonzeros
  //-------------------------------------------------------------------------------------------------------------

  template <class Scalar, class LocalOrdinal, class GlobalOrdinal, class Node>
  void ZoltanInterface<Scalar, LocalOrdinal, GlobalOrdinal, Node>::
  GetLocalNumberOfNonzeros(void *data, int NumGidEntries, int NumLidEntries, ZOLTAN_ID_PTR gids,
                           ZOLTAN_ID_PTR lids, int wgtDim, float *weights, int *ierr) {
    if (data == NULL || NumGidEntries < 1) {
      *ierr = ZOLTAN_FATAL;
      return;
    } else {
      *ierr = ZOLTAN_OK;
    }

    Matrix         *A  = (Matrix*) data;
    RCP<const Map> map = A->getRowMap();

    LO blockSize = A->GetFixedBlockSize();
    TEUCHOS_TEST_FOR_EXCEPTION(blockSize == 0, Exceptions::RuntimeError, "MueLu::Zoltan : Matrix has block size 0.");

    size_t              numElements = map->getNodeNumElements();
    ArrayView<const GO> mapGIDs     = map->getNodeElementList();

    if (blockSize == 1) {
      for (size_t i = 0; i < numElements; i++) {
        gids[i]    = as<ZOLTAN_ID_TYPE>(mapGIDs[i]);
        weights[i] = A->getNumEntriesInLocalRow(i);
      }

    } else {
      LO numBlockElements = numElements / blockSize;

      for (LO i = 0; i < numBlockElements; i++) {
        // Assign zoltan GID to the first row GID in the block
        // NOTE: Zoltan GIDs are different from GIDs in the Coordinates vector
        gids[i]    = as<ZOLTAN_ID_TYPE>(mapGIDs[i*blockSize]);
        weights[i] = 0.0;
        for (LO j = 0; j < blockSize; j++)
          weights[i] += A->getNumEntriesInLocalRow(i*blockSize+j);
      }
    }

  }

  //-------------------------------------------------------------------------------------------------------------
  // GetProblemDimension
  //-------------------------------------------------------------------------------------------------------------

  template <class Scalar, class LocalOrdinal, class GlobalOrdinal, class Node>
  int ZoltanInterface<Scalar, LocalOrdinal, GlobalOrdinal, Node>::
  GetProblemDimension(void *data, int *ierr)
  {
    int dim = *((int*)data);
    *ierr = ZOLTAN_OK;

    return dim;
  } //GetProblemDimension

  //-------------------------------------------------------------------------------------------------------------
  // GetProblemGeometry
  //-------------------------------------------------------------------------------------------------------------

  template <class Scalar, class LocalOrdinal, class GlobalOrdinal, class Node>
  void ZoltanInterface<Scalar, LocalOrdinal, GlobalOrdinal, Node>::
  GetProblemGeometry(void *data, int numGIDEntries, int numLIDEntries, int numObjectIDs,
                     ZOLTAN_ID_PTR gids, ZOLTAN_ID_PTR lids, int dim, double *coordinates, int *ierr)
  {
    if (data == NULL) {
      *ierr = ZOLTAN_FATAL;
      return;
    }

    typedef Xpetra::MultiVector<double, LocalOrdinal, GlobalOrdinal, Node> double_multivector_type;
    double_multivector_type *Coords = (double_multivector_type*) data;

    if (dim != Teuchos::as<int>(Coords->getNumVectors())) {
      //FIXME I'm assuming dim should be 1, 2, or 3 coming in?!
      *ierr = ZOLTAN_FATAL;
      return;
    }

    TEUCHOS_TEST_FOR_EXCEPTION(numObjectIDs != Teuchos::as<int>(Coords->getLocalLength()), Exceptions::Incompatible, "Length of coordinates must be the same as the number of objects");

    ArrayRCP<ArrayRCP<const double> > CoordsData(dim);
    for (int j = 0; j < dim; ++j)
      CoordsData[j] = Coords->getData(j);

    size_t numElements = Coords->getLocalLength();
    for (size_t i = 0; i < numElements; ++i)
      for (int j = 0; j < dim; ++j)
        coordinates[i*dim+j] = (double) CoordsData[j][i];

    *ierr = ZOLTAN_OK;

  } //GetProblemGeometry

} //namespace MueLu

#endif //if defined(HAVE_MUELU_ZOLTAN) && defined(HAVE_MPI)

#endif // MUELU_ZOLTANINTERFACE_DEF_HPP