/usr/include/trilinos/NOX_Epetra_MatrixFree.H is in libtrilinos-nox-dev 12.10.1-3.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 | //@HEADER
// ************************************************************************
//
// NOX: An Object-Oriented Nonlinear Solver Package
// Copyright (2002) Sandia Corporation
//
// Under terms of Contract DE-AC04-94AL85000, there is a non-exclusive
// license for use of this work by or on behalf of the U.S. Government.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// 1. Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//
// 2. Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
//
// 3. Neither the name of the Corporation nor the names of the
// contributors may be used to endorse or promote products derived from
// this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
// PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE
// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
// PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
// NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
// SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// Questions? Contact Roger Pawlowski (rppawlo@sandia.gov) or
// Eric Phipps (etphipp@sandia.gov), Sandia National Laboratories.
// ************************************************************************
// CVS Information
// $Source$
// $Author$
// $Date$
// $Revision$
// ************************************************************************
//@HEADER
#ifndef NOX_EPETRA_MATRIXFREE_H
#define NOX_EPETRA_MATRIXFREE_H
#include "Epetra_Comm.h"
#include "Epetra_Operator.h" // base class
#include "NOX_Epetra_Interface_Jacobian.H" // base class
#include "NOX_Utils.H"
#include "NOX_Common.H"
#include "Epetra_Import.h"
#include "NOX_Epetra_Vector.H"
#include "Teuchos_RCP.hpp"
#include "NOX_Solver_Generic.H"
// Forward Declarations
class Epetra_Comm;
class Epetra_Map;
namespace NOX {
namespace Abstract {
class Group;
}
namespace Epetra {
namespace Interface {
class Required;
}
}
}
namespace NOX {
namespace Epetra {
/*! \brief Concrete implementation for creating an Epetra_Operator Jacobian based on the Matrix-Free Newton-Krylov method.
Matrix-Free Newton-Krylov is a method that takes advantage of the fact the Newton Krylov solvers do not require an explicit Jacobian matrix. Newton-Krylov solvers only require the matrix-vector product \f$Jy\f$ in the iteration sequence. This product can approximated by the following:
\f[ Jy = \frac{F(x + \delta y) - F(x)}{\delta} \f]
where \f$J\f$ is the Jacobian, \f$F\f$ is the function evaluation, \f$x\f$ is the solution vector, \f$y\f$ is the vector to be operated on, and \f$\delta\f$ is a scalar perturbation calculated by:
\f[ \delta = \lambda * (\lambda + \frac{\| x\|}{\| y\|} ) \f]
where \f$ \lambda = 1.0e-6 \f$.
*/
class MatrixFree : public Epetra_Operator,
public virtual NOX::Epetra::Interface::Jacobian {
public:
//! Define types for use of the perturbation parameter \f$ \delta\f$.
enum DifferenceType {Forward, Backward, Centered};
/*! \brief Constructor
The vector \c x is used to clone the solution vector.
*/
MatrixFree(Teuchos::ParameterList& printParams,
const Teuchos::RCP<NOX::Epetra::Interface::Required>& i,
const NOX::Epetra::Vector& cloneVector,
bool useNewPerturbation = false);
//! Pure virtual destructor
virtual ~MatrixFree();
//! If set true, transpose of this operator will be applied.
/*! This flag allows the transpose of the given operator to be used implicitly. Setting this flag
affects only the Apply() and ApplyInverse() methods. If the implementation of this interface
does not support transpose use, this method should return a value of -1.
\param UseTranspose -If true, multiply by the transpose of operator, otherwise just use operator.
\return Integer error code, set to 0 if successful. Set to -1 if this implementation does not support transpose.
*/
virtual int SetUseTranspose(bool UseTranspose);
//! Returns the result of a Epetra_Operator applied to a Epetra_MultiVector X in Y.
/*!
\param X - A Epetra_MultiVector of dimension NumVectors to multiply with matrix.
\param Y -A Epetra_MultiVector of dimension NumVectors containing result.
\return Integer error code, set to 0 if successful.
*/
virtual int Apply(const Epetra_MultiVector& X, Epetra_MultiVector& Y) const;
//! Returns the result of a Epetra_Operator inverse applied to an Epetra_MultiVector X in Y.
/*!
\param X - A Epetra_MultiVector of dimension NumVectors to solve for.
\param Y -A Epetra_MultiVector of dimension NumVectors containing result.
\return Integer error code, set to 0 if successful.
\warning In order to work with AztecOO, any implementation of this method must
support the case where X and Y are the same object.
*/
virtual int ApplyInverse(const Epetra_MultiVector& X, Epetra_MultiVector& Y) const;
//! Returns the infinity norm of the global matrix.
/* Returns the quantity \f$ \| A \|_\infty\f$ such that
\f[\| A \|_\infty = \max_{1\lei\lem} \sum_{j=1}^n |a_{ij}| \f].
\warning This method must not be called unless HasNormInf() returns true. */
virtual double NormInf() const;
//! Returns a character std::string describing the operator
virtual const char* Label () const;
//! Returns the current UseTranspose setting.
virtual bool UseTranspose() const;
//! Returns true if the \e this object can provide an approximate Inf-norm, false otherwise.
virtual bool HasNormInf() const;
//! Returns a reference to the Epetra_Comm communicator associated with this operator.
virtual const Epetra_Comm & Comm() const;
//! Returns the Epetra_BlockMap object associated with the domain of this matrix operator.
virtual const Epetra_Map& OperatorDomainMap () const;
//! Returns the Epetra_BlockMap object associated with the range of this matrix operator.
virtual const Epetra_Map& OperatorRangeMap () const;
//! Compute Jacobian given the specified input vector, x. Returns true if computation was successful.
virtual bool computeJacobian(const Epetra_Vector& x, Epetra_Operator& Jac);
//! Set the type of perturbation method used (default is Forward)
virtual void setDifferenceMethod( DifferenceType type );
//! Allows the user to change the value of \f$ \lambda \f$ in the perturbation calculation.
void setLambda(double lambda_);
//! Flag that toggles whether MatrixFree should compute the perturbation parameter \f$ \eta \f$ or use a value supplied by the user through setPerturbation().
void setComputePerturbation(bool bVal);
//! Set the perturbation parameter \f$ \eta \f$.
void setPerturbation(double eta_);
//! Returns the most recently used value of the perturbation parameter \f$ \eta \f$.
double getPerturbation() const;
//! Clone a NOX::Abstract::Group derived object and use the computeF() method of that group for the perturbation instead of the NOX::Epetra::Interface::Required::computeF() method. This is required for LOCA to get the operators correct during homotopy.
void setGroupForComputeF(const NOX::Abstract::Group& group);
//! Save a RCP to a solver, and use the Solver's current Group's computeF() in the computeJacobian call, which can save a function call by respecting the isValid flag
void setSolverForComputeJacobian(const Teuchos::RCP<NOX::Solver::Generic>& slvr);
protected:
//! Label for matrix
std::string label;
//! User provided interface function
Teuchos::RCP<NOX::Epetra::Interface::Required> interface;
//! The current solution vector
NOX::Epetra::Vector currentX;
//! Perturbed solution vector
mutable NOX::Epetra::Vector perturbX;
//! Function evaluation at currentX
mutable NOX::Epetra::Vector fo;
//! Function evaluation at perturbX
mutable NOX::Epetra::Vector fp;
//! Optional pointer to function evaluation at -perturbX - needed only for centered finite differencing
mutable Teuchos::RCP<NOX::Epetra::Vector> fmPtr;
//! Epetra_Map object used in the returns of the Epetra_Operator derived methods.
/*! If the user is using Epetra_BlockMaps, then NOX::Epetra::MatrixFree must create an equivalent Epetra_Map from the Epetra_BlockMap that can be used as the return object of the OperatorDomainMap() and OperatorRangeMap() methods.
*/
Teuchos::RCP<const Epetra_Map> epetraMap;
//! Define types for use of the perturbation parameter \f$ \delta\f$.
DifferenceType diffType;
//! Scale factor for eta calculation
double lambda;
//! Perturbation value to use in the directional derivative
mutable double eta;
//! User specified perturbation value to use in the directional derivative. Set by setPerturbation().
double userEta;
//! Flag that determines if we should calculate eta or use a value set by the user.
bool computeEta;
//! Flag to enables the use of a group instead of the interface for the computeF() calls in the directional difference calculation.
bool useGroupForComputeF;
//! Flag to enables the use of Solver's Group instead of the interface for the computeF() calls in the directional difference calculation, to make use of isValid flags
bool useSolverForComputeJacobian;
//! A new perturbation formulation developed by C. T. Kelley and A. G. Salinger can be used by the constructor flag useNewPerturbation = true.
bool useNewPerturbation;
//! Pointer to the group for possible use in computeF() calls.
Teuchos::RCP<NOX::Abstract::Group> groupPtr;
//! Pointer to the Solver for possible use in computeF() calls.
Teuchos::RCP<NOX::Solver::Generic> slvrPtr;
//! Printing utilities.
NOX::Utils utils;
};
} // namespace Epetra
} // namespace NOX
#endif /* NOX_EPETRA_MATRIXFREE_H */
|