/usr/include/trilinos/Stokhos_LanczosPCEBasis.hpp is in libtrilinos-stokhos-dev 12.10.1-3.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 | // @HEADER
// ***********************************************************************
//
// Stokhos Package
// Copyright (2009) Sandia Corporation
//
// Under terms of Contract DE-AC04-94AL85000, there is a non-exclusive
// license for use of this work by or on behalf of the U.S. Government.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// 1. Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//
// 2. Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
//
// 3. Neither the name of the Corporation nor the names of the
// contributors may be used to endorse or promote products derived from
// this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
// PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE
// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
// PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
// NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
// SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// Questions? Contact Eric T. Phipps (etphipp@sandia.gov).
//
// ***********************************************************************
// @HEADER
#ifndef STOKHOS_LANCZOSPCEBASIS_HPP
#define STOKHOS_LANCZOSPCEBASIS_HPP
#include "Teuchos_RCP.hpp"
#include "Teuchos_Array.hpp"
#include "Teuchos_SerialDenseVector.hpp"
#include "Stokhos_RecurrenceBasis.hpp"
#include "Stokhos_OrthogPolyApprox.hpp"
#include "Stokhos_Quadrature.hpp"
#include "Stokhos_Lanczos.hpp"
namespace Stokhos {
template <typename ord_type, typename val_type>
class DiagonalOperator {
public:
typedef ord_type ordinal_type;
typedef val_type value_type;
typedef Teuchos::SerialDenseVector<ordinal_type, value_type> vector_type;
DiagonalOperator(const vector_type& A_): A(A_), n(A.length()) {}
void
apply(const vector_type& u, vector_type& v) const {
for (ordinal_type j=0; j<n; j++)
v[j] = A[j]*u[j];
}
protected:
const vector_type& A;
ordinal_type n;
};
/*!
* \brief Generates three-term recurrence using the Lanczos
* procedure applied to a polynomial chaos expansion in another basis.
*/
template <typename ordinal_type, typename value_type>
class LanczosPCEBasis :
public RecurrenceBasis<ordinal_type, value_type> {
public:
//! Constructor
/*!
* \param p order of the basis
* \param pce polynomial chaos expansion defining new density function
* \param quad quadrature data for basis of PC expansion
*/
LanczosPCEBasis(
ordinal_type p,
const Teuchos::RCP< const Stokhos::OrthogPolyApprox<ordinal_type, value_type> >& pce,
const Teuchos::RCP< const Stokhos::Quadrature<ordinal_type, value_type> >& quad,
bool normalize,
bool limit_integration_order);
//! Destructor
~LanczosPCEBasis();
//! \name Implementation of Stokhos::OneDOrthogPolyBasis methods
//@{
//! Get Gauss quadrature points, weights, and values of basis at points
virtual void
getQuadPoints(ordinal_type quad_order,
Teuchos::Array<value_type>& points,
Teuchos::Array<value_type>& weights,
Teuchos::Array< Teuchos::Array<value_type> >& values) const;
/*!
* \brief Clone this object with the option of building a higher order
* basis.
*/
/*!
* This method is following the Prototype pattern (see Design Pattern's textbook).
* The slight variation is that it allows the order of the polynomial to be modified,
* otherwise an exact copy is formed. The use case for this is creating basis functions
* for column indices in a spatially varying adaptive refinement context.
*/
virtual Teuchos::RCP<OneDOrthogPolyBasis<ordinal_type,value_type> > cloneWithOrder(ordinal_type p) const;
//@}
//! Get new coefficients in this new basis
value_type getNewCoeffs(ordinal_type i) const;
//! Map expansion coefficients from this basis to original
void transformCoeffsFromLanczos(const value_type *in,
value_type *out) const;
protected:
//! \name Implementation of Stokhos::RecurrenceBasis methods
//@{
//! Compute recurrence coefficients
virtual bool
computeRecurrenceCoefficients(ordinal_type n,
Teuchos::Array<value_type>& alpha,
Teuchos::Array<value_type>& beta,
Teuchos::Array<value_type>& delta,
Teuchos::Array<value_type>& gamma) const;
//! Setup basis after computing recurrence coefficients
virtual void setup();
//@}
//! Copy constructor with specified order
LanczosPCEBasis(ordinal_type p, const LanczosPCEBasis& basis);
private:
// Prohibit copying
LanczosPCEBasis(const LanczosPCEBasis&);
// Prohibit Assignment
LanczosPCEBasis& operator=(const LanczosPCEBasis& b);
protected:
typedef WeightedVectorSpace<ordinal_type,value_type> vectorspace_type;
typedef DiagonalOperator<ordinal_type,value_type> operator_type;
typedef Stokhos::Lanczos<vectorspace_type, operator_type> lanczos_type;
typedef typename lanczos_type::matrix_type matrix_type;
typedef typename lanczos_type::vector_type vector_type;
//! PCE Lanczos procedure is based on
Teuchos::RCP< const Stokhos::OrthogPolyApprox<ordinal_type, value_type> > pce;
//! Quadrature object
Teuchos::RCP< const Stokhos::Quadrature<ordinal_type, value_type> > quad;
//! Flag indicating whether to limit the integration order
bool limit_integration_order;
//! Number of quadrature points
ordinal_type nqp;
//! Quadrature weights
vector_type pce_weights;
//! Values of PCE at quadrature points
vector_type pce_vals;
//! Initial Lanczos vector
vector_type u0;
//! Lanczos vectors
mutable matrix_type lanczos_vecs;
//! Matrix mapping coefficients in Stieltjes basis back to original basis
matrix_type fromStieltjesMat;
//! Projection of pce in new basis
vector_type new_pce;
}; // class LanczosPCEBasis
} // Namespace Stokhos
// Include template definitions
#include "Stokhos_LanczosPCEBasisImp.hpp"
#endif
|