/usr/include/trilinos/Tpetra_CrsMatrix_decl.hpp is in libtrilinos-tpetra-dev 12.10.1-3.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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// ***********************************************************************
//
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#ifndef TPETRA_CRSMATRIX_DECL_HPP
#define TPETRA_CRSMATRIX_DECL_HPP
/// \file Tpetra_CrsMatrix_decl.hpp
/// \brief Declaration of the Tpetra::CrsMatrix class
///
/// If you want to use Tpetra::CrsMatrix, include
/// "Tpetra_CrsMatrix.hpp" (a file which CMake generates and installs
/// for you). If you only want the declaration of Tpetra::CrsMatrix,
/// include this file (Tpetra_CrsMatrix_decl.hpp).
#include "Tpetra_ConfigDefs.hpp"
#include "Tpetra_RowMatrix_decl.hpp"
#include "Tpetra_Exceptions.hpp"
#include "Tpetra_DistObject.hpp"
#include "Tpetra_CrsGraph.hpp"
#include "Tpetra_Vector.hpp"
// localMultiply is templated on DomainScalar and RangeScalar, so we
// have to include this header file here, rather than in the _def
// header file, so that we can get KokkosSparse::spmv.
#include "Kokkos_Sparse.hpp"
// localGaussSeidel and reorderedLocalGaussSeidel are templated on
// DomainScalar and RangeScalar, so we have to include this header
// file here, rather than in the _def header file, so that we can get
// the interfaces to the corresponding local computational kernels.
#include "Kokkos_Sparse_impl_sor.hpp"
namespace Tpetra {
/// \class CrsMatrix
/// \brief Sparse matrix that presents a row-oriented interface that
/// lets users read or modify entries.
///
/// \tparam Scalar The type of the numerical entries of the matrix.
/// (You can use real-valued or complex-valued types here, unlike
/// in Epetra, where the scalar type is always \c double.)
/// \tparam LocalOrdinal The type of local indices. See the
/// documentation of Map for requirements.
/// \tparam GlobalOrdinal The type of global indices. See the
/// documentation of Map for requirements.
/// \tparam Node The Kokkos Node type. See the documentation of Map
/// for requirements.
///
/// This class implements a distributed-memory parallel sparse matrix,
/// and provides sparse matrix-vector multiply (including transpose)
/// and sparse triangular solve operations. It provides access by rows
/// to the elements of the matrix, as if the local data were stored in
/// compressed sparse row format. (Implementations are <i>not</i>
/// required to store the data in this way internally.) This class has
/// an interface like that of Epetra_CrsMatrix, but also allows
/// insertion of data into nonowned rows, much like Epetra_FECrsMatrix.
///
/// \section Tpetra_CrsMatrix_prereq Prerequisites
///
/// Before reading the rest of this documentation, it helps to know
/// something about the Teuchos memory management classes, in
/// particular Teuchos::RCP, Teuchos::ArrayRCP, and Teuchos::ArrayView.
/// You should also know a little bit about MPI (the Message Passing
/// Interface for distributed-memory programming). You won't have to
/// use MPI directly to use CrsMatrix, but it helps to be familiar with
/// the general idea of distributed storage of data over a
/// communicator. Finally, you should read the documentation of Map
/// and MultiVector.
///
/// \section Tpetra_CrsMatrix_local_vs_global Local and global indices
///
/// The distinction between local and global indices might confuse new
/// Tpetra users. Please refer to the documentation of Map for a
/// detailed explanation. This is important because many of
/// CrsMatrix's methods for adding, modifying, or accessing entries
/// come in versions that take either local or global indices. The
/// matrix itself may store indices either as local or global, and the
/// same matrix may use global indices or local indices at different
/// points in its life. You should only use the method version
/// corresponding to the current state of the matrix. For example,
/// getGlobalRowView() returns a view to the indices represented as
/// global; it is incorrect to call this method if the matrix is
/// storing indices as local. Call isGloballyIndexed() or
/// isLocallyIndexed() to find out whether the matrix currently stores
/// indices as local or global.
///
/// It may also help to read CrsGraph's documentation.
///
/// \section Tpetra_CrsMatrix_insertion_into_nonowned_rows Insertion into nonowned rows
///
/// All methods (except for insertGlobalValues() and
/// sumIntoGlobalValues(); see below) that work with global indices
/// only allow operations on indices owned by the calling process. For
/// example, methods that take a global row index expect that row to be
/// owned by the calling process. Access to <i>nonowned rows</i>, that
/// is, rows <i>not</i> owned by the calling process, requires
/// performing an explicit communication via the Import / Export
/// capabilities of the CrsMatrix object. See the documentation of
/// DistObject for more details.
///
/// The methods insertGlobalValues() and sumIntoGlobalValues() are
/// exceptions to this rule. They both allows you to add data to
/// nonowned rows. These data are stored locally and communicated to
/// the appropriate process on the next call to globalAssemble() or
/// fillComplete(). This means that CrsMatrix provides the same
/// nonowned insertion functionality that Epetra provides via
/// Epetra_FECrsMatrix.
///
/// \section Tpetra_DistObject_MultDist Note for developers on DistObject
///
/// DistObject only takes a single Map as input to its constructor.
/// MultiVector is an example of a subclass for which a single Map
/// suffices to describe its data distribution. In that case,
/// DistObject's getMap() method obviously must return that Map.
/// CrsMatrix is an example of a subclass that requires two Map
/// objects: a row Map and a column Map. For CrsMatrix, getMap()
/// returns the row Map. This means that doTransfer() (which
/// CrsMatrix does not override) uses the row Map objects of the
/// source and target CrsMatrix objects. CrsMatrix in turn uses its
/// column Map (if it has one) to "filter" incoming sparse matrix
/// entries whose column indices are not in that process' column
/// Map. This means that CrsMatrix may perform extra communication,
/// though the Import and Export operations are still correct.
///
/// This is necessary if the CrsMatrix does not yet have a column
/// Map. Other processes might have added new entries to the
/// matrix; the calling process has to see them in order to accept
/// them. However, the CrsMatrix may already have a column Map, for
/// example, if it was created with the constructor that takes both
/// a row and a column Map, or if it is fill complete (which creates
/// the column Map if the matrix does not yet have one). In this
/// case, it could be possible to "filter" on the sender (instead of
/// on the receiver, as CrsMatrix currently does) and avoid sending
/// data corresponding to columns that the receiver does not own.
/// Doing this would require revising the Import or Export object
/// (instead of the incoming data) using the column Map, to remove
/// global indices and their target process ranks from the send
/// lists if the target process does not own those columns, and to
/// remove global indices and their source process ranks from the
/// receive lists if the calling process does not own those columns.
/// (Abstractly, this is a kind of set difference between an Import
/// or Export object for the row Maps, and the Import resp. Export
/// object for the column Maps.) This could be done separate from
/// DistObject, by creating a new "filtered" Import or Export
/// object, that keeps the same source and target Map objects but
/// has a different communication plan. We have not yet implemented
/// this optimization.
template <class Scalar = ::Tpetra::Details::DefaultTypes::scalar_type,
class LocalOrdinal = ::Tpetra::Details::DefaultTypes::local_ordinal_type,
class GlobalOrdinal = ::Tpetra::Details::DefaultTypes::global_ordinal_type,
class Node = ::Tpetra::Details::DefaultTypes::node_type,
const bool classic = Node::classic>
class CrsMatrix :
public RowMatrix<Scalar, LocalOrdinal, GlobalOrdinal, Node>,
public DistObject<char, LocalOrdinal, GlobalOrdinal, Node, classic>
{
public:
//! @name Typedefs
//@{
/// \brief This class' first template parameter; the type of each
/// entry in the matrix.
typedef Scalar scalar_type;
/// \brief The type used internally in place of \c Scalar.
///
/// Some \c Scalar types might not work with Kokkos on all
/// execution spaces, due to missing CUDA device macros or
/// volatile overloads. The C++ standard type std::complex<T> has
/// this problem. To fix this, we replace std::complex<T> values
/// internally with the (usually) bitwise identical type
/// Kokkos::complex<T>. The latter is the \c impl_scalar_type
/// corresponding to \c Scalar = std::complex.
typedef typename Kokkos::Details::ArithTraits<Scalar>::val_type impl_scalar_type;
//! This class' second template parameter; the type of local indices.
typedef LocalOrdinal local_ordinal_type;
//! This class' third template parameter; the type of global indices.
typedef GlobalOrdinal global_ordinal_type;
//! This class' fourth template parameter; the Kokkos device type.
typedef Node node_type;
//! The Kokkos device type.
typedef typename Node::device_type device_type;
//! The Kokkos execution space.
typedef typename device_type::execution_space execution_space;
/// \brief Type of a norm result.
///
/// This is usually the same as the type of the magnitude
/// (absolute value) of <tt>Scalar</tt>, but may differ for
/// certain <tt>Scalar</tt> types.
typedef typename Kokkos::Details::ArithTraits<impl_scalar_type>::mag_type mag_type;
//! The Map specialization suitable for this CrsMatrix specialization.
typedef Map<LocalOrdinal, GlobalOrdinal, Node> map_type;
//! The Import specialization suitable for this CrsMatrix specialization.
typedef Import<LocalOrdinal, GlobalOrdinal, Node> import_type;
//! The Export specialization suitable for this CrsMatrix specialization.
typedef Export<LocalOrdinal, GlobalOrdinal, Node> export_type;
//! The CrsGraph specialization suitable for this CrsMatrix specialization.
typedef CrsGraph<LocalOrdinal, GlobalOrdinal, Node, classic> crs_graph_type;
//! The part of the sparse matrix's graph on each MPI process.
typedef typename crs_graph_type::local_graph_type local_graph_type;
/// \brief The specialization of Kokkos::CrsMatrix that represents
/// the part of the sparse matrix on each MPI process.
typedef Kokkos::CrsMatrix<impl_scalar_type, LocalOrdinal, execution_space, void,
typename local_graph_type::size_type> local_matrix_type;
//! DEPRECATED; use <tt>local_matrix_type::row_map_type</tt> instead.
typedef typename local_matrix_type::row_map_type t_RowPtrs TPETRA_DEPRECATED;
//! DEPRECATED; use <tt>local_matrix_type::row_map_type::non_const_type</tt> instead.
typedef typename local_matrix_type::row_map_type::non_const_type t_RowPtrsNC TPETRA_DEPRECATED;
//! DEPRECATED; use <tt>local_graph_type::entries_type::non_const_type</tt> instead.
typedef typename local_graph_type::entries_type::non_const_type t_LocalOrdinal_1D TPETRA_DEPRECATED;
//! DEPRECATED; use <tt>local_matrix_type::values_type</tt> instead.
typedef typename local_matrix_type::values_type t_ValuesType TPETRA_DEPRECATED;
//! DEPRECATED; use local_matrix_type instead.
typedef local_matrix_type k_local_matrix_type TPETRA_DEPRECATED;
//@}
//! @name Constructors and destructor
//@{
/// \brief Constructor specifying fixed number of entries for each row.
///
/// \param rowMap [in] Distribution of rows of the matrix.
///
/// \param maxNumEntriesPerRow [in] Maximum number of matrix
/// entries per row. If pftype==DynamicProfile, this is only a
/// hint, and you can set this to zero without affecting
/// correctness. If pftype==StaticProfile, this sets the amount
/// of storage allocated, and you cannot exceed this number of
/// entries in any row.
///
/// \param pftype [in] Whether to allocate storage dynamically
/// (DynamicProfile) or statically (StaticProfile).
///
/// \param params [in/out] Optional list of parameters. If not
/// null, any missing parameters will be filled in with their
/// default values.
CrsMatrix (const Teuchos::RCP<const map_type>& rowMap,
size_t maxNumEntriesPerRow,
ProfileType pftype = DynamicProfile,
const Teuchos::RCP<Teuchos::ParameterList>& params = Teuchos::null);
/// \brief Constructor specifying (possibly different) number of entries in each row.
///
/// \param rowMap [in] Distribution of rows of the matrix.
///
/// \param NumEntriesPerRowToAlloc [in] Maximum number of matrix
/// entries to allocate for each row. If
/// pftype==DynamicProfile, this is only a hint. If
/// pftype==StaticProfile, this sets the amount of storage
/// allocated, and you cannot exceed the allocated number of
/// entries for any row.
///
/// \param pftype [in] Whether to allocate storage dynamically
/// (DynamicProfile) or statically (StaticProfile).
///
/// \param params [in/out] Optional list of parameters. If not
/// null, any missing parameters will be filled in with their
/// default values.
CrsMatrix (const Teuchos::RCP<const map_type>& rowMap,
const Teuchos::ArrayRCP<const size_t>& NumEntriesPerRowToAlloc,
ProfileType pftype = DynamicProfile,
const Teuchos::RCP<Teuchos::ParameterList>& params = Teuchos::null);
/// \brief Constructor specifying column Map and fixed number of entries for each row.
///
/// The column Map will be used to filter any matrix entries
/// inserted using insertLocalValues() or insertGlobalValues().
///
/// \param rowMap [in] Distribution of rows of the matrix.
///
/// \param colMap [in] Distribution of columns of the matrix.
///
/// \param maxNumEntriesPerRow [in] Maximum number of matrix
/// entries per row. If pftype==DynamicProfile, this is only a
/// hint, and you can set this to zero without affecting
/// correctness. If pftype==StaticProfile, this sets the amount
/// of storage allocated, and you cannot exceed this number of
/// entries in any row.
///
/// \param pftype [in] Whether to allocate storage dynamically
/// (DynamicProfile) or statically (StaticProfile).
///
/// \param params [in/out] Optional list of parameters. If not
/// null, any missing parameters will be filled in with their
/// default values.
CrsMatrix (const Teuchos::RCP<const map_type>& rowMap,
const Teuchos::RCP<const map_type>& colMap,
size_t maxNumEntriesPerRow,
ProfileType pftype = DynamicProfile,
const Teuchos::RCP<Teuchos::ParameterList>& params = Teuchos::null);
/// \brief Constructor specifying column Map and number of entries in each row.
///
/// The column Map will be used to filter any matrix indices
/// inserted using insertLocalValues() or insertGlobalValues().
///
/// \param rowMap [in] Distribution of rows of the matrix.
///
/// \param colMap [in] Distribution of columns of the matrix.
///
/// \param NumEntriesPerRowToAlloc [in] Maximum number of matrix
/// entries to allocate for each row. If
/// pftype==DynamicProfile, this is only a hint. If
/// pftype==StaticProfile, this sets the amount of storage
/// allocated, and you cannot exceed the allocated number of
/// entries for any row.
///
/// \param pftype [in] Whether to allocate storage dynamically
/// (DynamicProfile) or statically (StaticProfile).
///
/// \param params [in/out] Optional list of parameters. If not
/// null, any missing parameters will be filled in with their
/// default values.
CrsMatrix (const Teuchos::RCP<const map_type>& rowMap,
const Teuchos::RCP<const map_type>& colMap,
const Teuchos::ArrayRCP<const size_t>& NumEntriesPerRowToAlloc,
ProfileType pftype = DynamicProfile,
const Teuchos::RCP<Teuchos::ParameterList>& params = Teuchos::null);
/// \brief Constructor specifying a previously constructed graph.
///
/// Calling this constructor fixes the graph structure of the
/// sparse matrix. We say in this case that the matrix has a
/// "static graph." If you create a CrsMatrix with this
/// constructor, you are not allowed to insert new entries into
/// the matrix, but you are allowed to change values in the
/// matrix.
///
/// The given graph must be fill complete. Note that calling
/// resumeFill() on the graph makes it not fill complete, even if
/// you had previously called fillComplete() on the graph. In
/// that case, you must call fillComplete() on the graph again
/// before invoking this CrsMatrix constructor.
///
/// This constructor is marked \c explicit so that you can't
/// create a CrsMatrix by accident when passing a CrsGraph into a
/// function that takes a CrsMatrix.
///
/// \param graph [in] The graph structure of the sparse matrix.
/// The graph <i>must</i> be fill complete.
/// \param params [in/out] Optional list of parameters. If not
/// null, any missing parameters will be filled in with their
/// default values.
explicit CrsMatrix (const Teuchos::RCP<const crs_graph_type>& graph,
const Teuchos::RCP<Teuchos::ParameterList>& params = Teuchos::null);
/// \brief Constructor specifying column Map and arrays containing
/// the matrix in sorted local indices.
///
/// \param rowMap [in] Distribution of rows of the matrix.
///
/// \param colMap [in] Distribution of columns of the matrix.
///
/// \param rowPointers [in] The beginning of each row in the matrix,
/// as in a CSR "rowptr" array. The length of this vector should be
/// equal to the number of rows in the graph, plus one. This last
/// entry should store the nunber of nonzeros in the matrix.
///
/// \param columnIndices [in] The local indices of the columns,
/// as in a CSR "colind" array. The length of this vector
/// should be equal to the number of unknowns in the matrix.
///
/// \param values [in] The local entries in the matrix,
/// as in a CSR "vals" array. The length of this vector
/// should be equal to the number of unknowns in the matrix.
///
/// \param params [in/out] Optional list of parameters. If not
/// null, any missing parameters will be filled in with their
/// default values.
CrsMatrix (const Teuchos::RCP<const map_type>& rowMap,
const Teuchos::RCP<const map_type>& colMap,
const typename local_matrix_type::row_map_type& rowPointers,
const typename local_graph_type::entries_type::non_const_type& columnIndices,
const typename local_matrix_type::values_type& values,
const Teuchos::RCP<Teuchos::ParameterList>& params = Teuchos::null);
/// \brief Constructor specifying column Map and arrays containing
/// the matrix in sorted, local ids.
///
/// \param rowMap [in] Distribution of rows of the matrix.
///
/// \param colMap [in] Distribution of columns of the matrix.
///
/// \param rowPointers [in] The beginning of each row in the matrix,
/// as in a CSR "rowptr" array. The length of this vector should be
/// equal to the number of rows in the graph, plus one. This last
/// entry should store the nunber of nonzeros in the matrix.
///
/// \param columnIndices [in] The local indices of the columns,
/// as in a CSR "colind" array. The length of this vector
/// should be equal to the number of unknowns in the matrix.
///
/// \param values [in] The local entries in the matrix,
/// as in a CSR "vals" array. The length of this vector
/// should be equal to the number of unknowns in the matrix.
///
/// \param params [in/out] Optional list of parameters. If not
/// null, any missing parameters will be filled in with their
/// default values.
CrsMatrix (const Teuchos::RCP<const map_type>& rowMap,
const Teuchos::RCP<const map_type>& colMap,
const Teuchos::ArrayRCP<size_t>& rowPointers,
const Teuchos::ArrayRCP<LocalOrdinal>& columnIndices,
const Teuchos::ArrayRCP<Scalar>& values,
const Teuchos::RCP<Teuchos::ParameterList>& params = Teuchos::null);
/// \brief Constructor specifying column Map and a local matrix,
/// which the resulting CrsMatrix views.
///
/// Unlike most other CrsMatrix constructors, successful
/// completion of this constructor will result in a fill-complete
/// matrix.
///
/// \param rowMap [in] Distribution of rows of the matrix.
///
/// \param colMap [in] Distribution of columns of the matrix.
///
/// \param lclMatrix [in] A local CrsMatrix containing all local
/// matrix values as well as a local graph. The graph's local
/// row indices must come from the specified row Map, and its
/// local column indices must come from the specified column
/// Map.
///
/// \param params [in/out] Optional list of parameters. If not
/// null, any missing parameters will be filled in with their
/// default values.
CrsMatrix (const Teuchos::RCP<const map_type>& rowMap,
const Teuchos::RCP<const map_type>& colMap,
const local_matrix_type& lclMatrix,
const Teuchos::RCP<Teuchos::ParameterList>& params = Teuchos::null);
// This friend declaration makes the clone() method work.
template <class S2, class LO2, class GO2, class N2, const bool isClassic>
friend class CrsMatrix;
/// \brief Create a deep copy of this CrsMatrix, where the copy
/// may have a different Node type.
///
/// \param node2 [in] Kokkos Node instance for the returned copy.
/// \param params [in/out] Optional list of parameters. If not
/// null, any missing parameters will be filled in with their
/// default values.
///
/// Parameters to \c params:
/// - "Static profile clone" [boolean, default: true] If \c true,
/// create the copy with a static allocation profile. If false,
/// use a dynamic allocation profile.
/// - "Locally indexed clone" [boolean] If \c true, fill clone
/// using this matrix's column Map and local indices. This
/// matrix must have a column Map in order for this to work. If
/// false, fill clone using global indices. By default, this
/// will use local indices only if this matrix is using local
/// indices.
/// - "fillComplete clone" [boolean, default: true] If \c true,
/// call fillComplete() on the cloned CrsMatrix object, with
/// parameters from the input parameters' "CrsMatrix" sublist
/// The domain Map and range Map passed to fillComplete() are
/// those of the map being cloned, if they exist. Otherwise, the
/// row Map is used.
template <class Node2>
Teuchos::RCP<CrsMatrix<Scalar, LocalOrdinal, GlobalOrdinal, Node2, Node2::classic> >
clone (const Teuchos::RCP<Node2>& node2,
const Teuchos::RCP<Teuchos::ParameterList>& params = Teuchos::null) const
{
using Teuchos::Array;
using Teuchos::ArrayRCP;
using Teuchos::ArrayView;
using Teuchos::null;
using Teuchos::ParameterList;
using Teuchos::RCP;
using Teuchos::rcp;
using Teuchos::sublist;
typedef CrsMatrix<Scalar, LocalOrdinal, GlobalOrdinal, Node2, Node2::classic> CrsMatrix2;
typedef Map<LocalOrdinal, GlobalOrdinal, Node2> Map2;
const char tfecfFuncName[] = "clone";
// Get parameter values. Set them initially to their default values.
bool fillCompleteClone = true;
bool useLocalIndices = this->hasColMap ();
ProfileType pftype = StaticProfile;
if (! params.is_null ()) {
fillCompleteClone = params->get ("fillComplete clone", fillCompleteClone);
useLocalIndices = params->get ("Locally indexed clone", useLocalIndices);
bool staticProfileClone = true;
staticProfileClone = params->get ("Static profile clone", staticProfileClone);
pftype = staticProfileClone ? StaticProfile : DynamicProfile;
}
TEUCHOS_TEST_FOR_EXCEPTION_CLASS_FUNC(
! this->hasColMap () && useLocalIndices, std::runtime_error,
": You requested that the returned clone have local indices, but the "
"the source matrix does not have a column Map yet.");
RCP<const Map2> clonedRowMap = this->getRowMap ()->template clone<Node2> (node2);
// Get an upper bound on the number of entries per row.
RCP<CrsMatrix2> clonedMatrix;
ArrayRCP<const size_t> numEntriesPerRow;
size_t numEntriesForAll = 0;
bool boundSameForAllLocalRows = false;
staticGraph_->getNumEntriesPerLocalRowUpperBound (numEntriesPerRow,
numEntriesForAll,
boundSameForAllLocalRows);
TEUCHOS_TEST_FOR_EXCEPTION_CLASS_FUNC(
numEntriesForAll != 0 &&
static_cast<size_t> (numEntriesPerRow.size ()) != 0,
std::logic_error, ": getNumEntriesPerLocalRowUpperBound returned a "
"nonzero numEntriesForAll = " << numEntriesForAll << " , as well as a "
"numEntriesPerRow array of nonzero length " << numEntriesPerRow.size ()
<< ". This should never happen. Please report this bug to the Tpetra "
"developers.");
TEUCHOS_TEST_FOR_EXCEPTION_CLASS_FUNC(
numEntriesForAll != 0 && ! boundSameForAllLocalRows,
std::logic_error, ": getNumEntriesPerLocalRowUpperBound returned a "
"nonzero numEntriesForAll = " << numEntriesForAll << " , but claims "
"(via its third output value) that the upper bound is not the same for "
"all rows. This should never happen. Please report this bug to the "
"Tpetra developers.");
TEUCHOS_TEST_FOR_EXCEPTION_CLASS_FUNC(
numEntriesPerRow.size () != 0 && boundSameForAllLocalRows,
std::logic_error, ": getNumEntriesPerLocalRowUpperBound returned a "
"numEntriesPerRow array of nonzero length " << numEntriesPerRow.size ()
<< ", but claims (via its third output value) that the upper bound is "
"not the same for all rows. This should never happen. Please report "
"this bug to the Tpetra developers.");
RCP<ParameterList> matParams =
params.is_null () ? null : sublist (params,"CrsMatrix");
if (useLocalIndices) {
RCP<const Map2> clonedColMap =
this->getColMap ()->template clone<Node2> (node2);
if (numEntriesPerRow.is_null ()) {
clonedMatrix = rcp (new CrsMatrix2 (clonedRowMap, clonedColMap,
numEntriesForAll, pftype,
matParams));
}
else {
clonedMatrix = rcp (new CrsMatrix2 (clonedRowMap, clonedColMap,
numEntriesPerRow, pftype,
matParams));
}
}
else {
if (numEntriesPerRow.is_null ()) {
clonedMatrix = rcp (new CrsMatrix2 (clonedRowMap, numEntriesForAll,
pftype, matParams));
}
else {
clonedMatrix = rcp (new CrsMatrix2 (clonedRowMap, numEntriesPerRow,
pftype, matParams));
}
}
// done with these
numEntriesPerRow = Teuchos::null;
numEntriesForAll = 0;
if (useLocalIndices) {
clonedMatrix->allocateValues (LocalIndices,
CrsMatrix2::GraphNotYetAllocated);
if (this->isLocallyIndexed ()) {
ArrayView<const LocalOrdinal> linds;
ArrayView<const Scalar> vals;
for (LocalOrdinal lrow = clonedRowMap->getMinLocalIndex ();
lrow <= clonedRowMap->getMaxLocalIndex ();
++lrow) {
this->getLocalRowView (lrow, linds, vals);
if (linds.size ()) {
clonedMatrix->insertLocalValues (lrow, linds, vals);
}
}
}
else { // this->isGloballyIndexed()
Array<LocalOrdinal> linds;
Array<Scalar> vals;
for (LocalOrdinal lrow = clonedRowMap->getMinLocalIndex ();
lrow <= clonedRowMap->getMaxLocalIndex ();
++lrow) {
size_t theNumEntries = this->getNumEntriesInLocalRow (lrow);
if (theNumEntries > static_cast<size_t> (linds.size ())) {
linds.resize (theNumEntries);
}
if (theNumEntries > static_cast<size_t> (vals.size ())) {
vals.resize (theNumEntries);
}
this->getLocalRowCopy (clonedRowMap->getGlobalElement (lrow),
linds (), vals (), theNumEntries);
if (theNumEntries != 0) {
clonedMatrix->insertLocalValues (lrow, linds (0, theNumEntries),
vals (0, theNumEntries));
}
}
}
}
else { // useGlobalIndices
clonedMatrix->allocateValues (GlobalIndices,
CrsMatrix2::GraphNotYetAllocated);
if (this->isGloballyIndexed ()) {
ArrayView<const GlobalOrdinal> ginds;
ArrayView<const Scalar> vals;
for (GlobalOrdinal grow = clonedRowMap->getMinGlobalIndex ();
grow <= clonedRowMap->getMaxGlobalIndex ();
++grow) {
this->getGlobalRowView (grow, ginds, vals);
if (ginds.size () > 0) {
clonedMatrix->insertGlobalValues (grow, ginds, vals);
}
}
}
else { // this->isLocallyIndexed()
Array<GlobalOrdinal> ginds;
Array<Scalar> vals;
for (GlobalOrdinal grow = clonedRowMap->getMinGlobalIndex ();
grow <= clonedRowMap->getMaxGlobalIndex ();
++grow) {
size_t theNumEntries = this->getNumEntriesInGlobalRow (grow);
if (theNumEntries > static_cast<size_t> (ginds.size ())) {
ginds.resize (theNumEntries);
}
if (theNumEntries > static_cast<size_t> (vals.size ())) {
vals.resize (theNumEntries);
}
this->getGlobalRowCopy (grow, ginds (), vals (), theNumEntries);
if (theNumEntries != 0) {
clonedMatrix->insertGlobalValues (grow, ginds (0, theNumEntries),
vals (0, theNumEntries));
}
}
}
}
if (fillCompleteClone) {
RCP<const Map2> clonedRangeMap;
RCP<const Map2> clonedDomainMap;
try {
if (! this->getRangeMap ().is_null () &&
this->getRangeMap () != clonedRowMap) {
clonedRangeMap = this->getRangeMap ()->template clone<Node2> (node2);
}
else {
clonedRangeMap = clonedRowMap;
}
if (! this->getDomainMap ().is_null () &&
this->getDomainMap () != clonedRowMap) {
clonedDomainMap = this->getDomainMap ()->template clone<Node2> (node2);
}
else {
clonedDomainMap = clonedRowMap;
}
}
catch (std::exception &e) {
const bool caughtExceptionOnClone = true;
TEUCHOS_TEST_FOR_EXCEPTION
(caughtExceptionOnClone, std::runtime_error,
Teuchos::typeName (*this) << "::clone: Caught the following "
"exception while cloning range and domain Maps on a clone of "
"type " << Teuchos::typeName (*clonedMatrix) << ": " << e.what ());
}
RCP<ParameterList> fillparams =
params.is_null () ? Teuchos::null : sublist (params, "fillComplete");
try {
clonedMatrix->fillComplete (clonedDomainMap, clonedRangeMap,
fillparams);
}
catch (std::exception &e) {
const bool caughtExceptionOnClone = true;
TEUCHOS_TEST_FOR_EXCEPTION(
caughtExceptionOnClone, std::runtime_error,
Teuchos::typeName (*this) << "::clone: Caught the following "
"exception while calling fillComplete() on a clone of type "
<< Teuchos::typeName (*clonedMatrix) << ": " << e.what ());
}
}
return clonedMatrix;
}
//! Destructor.
virtual ~CrsMatrix ();
//@}
//! @name Methods for inserting, modifying, or removing entries
//@{
/// \brief Insert one or more entries into the matrix, using
/// global column indices.
///
/// \param globalRow [in] Global index of the row into which to
/// insert the entries.
/// \param cols [in] Global indices of the columns into which
/// to insert the entries.
/// \param vals [in] Values to insert into the above columns.
///
/// For all k in 0, ..., <tt>col.size()-1</tt>, insert the value
/// <tt>values[k]</tt> into entry <tt>(globalRow, cols[k])</tt> of
/// the matrix. If that entry already exists, add the new value
/// to the old value.
///
/// This is a local operation. It does not communicate (using
/// MPI). If row \c globalRow is owned by the calling process,
/// the entries will be inserted immediately. Otherwise, if that
/// row is <i>not</i> owned by the calling process, then the
/// entries will be stored locally for now, and only communicated
/// to the process that owns the row when either fillComplete() or
/// globalAssemble() is called. If that process already has an
/// entry, the incoming value will be added to the old value, just
/// as if it were inserted on the owning process.
//
/// If the matrix has a column Map (<tt>hasColMap() == true</tt>),
/// and if globalRow is owned by process p, then it is forbidden
/// to insert column indices that are not in the column Map on
/// process p. Tpetra will test the input column indices to
/// ensure this is the case, but if \c globalRow is not owned by
/// the calling process, the test will be deferred until the next
/// call to globalAssemble() or fillComplete().
///
/// \warning The behavior described in the above paragraph differs
/// from that of Epetra. If the matrix has a column Map,
/// Epetra_CrsMatrix "filters" column indices not in the column
/// Map. Many users found this confusing, so we changed it so
/// that nonowned column indices are forbidden.
///
/// It is legal to call this method whether the matrix's column
/// indices are globally or locally indexed. If the matrix's
/// column indices are locally indexed (<tt>isLocallyIndexed() ==
/// true</tt>), then this method will convert the input global
/// column indices to local column indices.
///
/// For better performance when filling entries into a sparse
/// matrix, consider the following tips:
/// <ol>
/// <li>Use local indices (e.g., insertLocalValues()) if you know
/// the column Map in advance. Converting global indices to
/// local indices is expensive. Of course, if you don't know
/// the column Map in advance, you must use global indices.</li>
/// <li>When invoking the CrsMatrix constructor, give the best
/// possible upper bounds on the number of entries in each row
/// of the matrix. This will avoid expensive reallocation if
/// your bound was not large enough.</li>
/// <li>If your upper bound on the number of entries in each row
/// will always be correct, create the matrix with
/// StaticProfile. This uses a faster and more compact data
/// structure to store the matrix.</li>
/// <li>If you plan to reuse a matrix's graph structure, but
/// change its values, in repeated fillComplete() / resumeFill()
/// cycles, you can get the best performance by creating the
/// matrix with a const CrsGraph. Do this by using the
/// CrsMatrix constructor that accepts an RCP of a const
/// CrsGraph. If you do this, you must use the "replace" or
/// "sumInto" methods to change the values of the matrix; you
/// may not use insertGlobalValues() or
/// insertLocalValues().</li>
/// </ol>
void
insertGlobalValues (const GlobalOrdinal globalRow,
const Teuchos::ArrayView<const GlobalOrdinal>& cols,
const Teuchos::ArrayView<const Scalar>& vals);
/// \brief Epetra compatibility version of insertGlobalValues (see
/// above) that takes arguments as raw pointers, rather than
/// Teuchos::ArrayView.
///
/// Arguments are the same and in the same order as
/// Epetra_CrsMatrix::InsertGlobalValues.
///
/// \param globalRow [in] Global index of the row into which to
/// insert the entries.
/// \param numEnt [in] Number of entries to insert; number of
/// valid entries in \c vals and \c inds.
/// \param vals [in] Values to insert.
/// \param inds [in] Global indices of the columns into which
/// to insert the entries.
void
insertGlobalValues (const GlobalOrdinal globalRow,
const LocalOrdinal numEnt,
const Scalar vals[],
const GlobalOrdinal inds[]);
/// \brief Insert one or more entries into the matrix, using local
/// column indices.
///
/// \param localRow [in] Local index of the row into which to
/// insert the entries. It must be owned by the row Map on the
/// calling process.
/// \param cols [in] Local indices of the columns into which to
/// insert the entries. All of the column indices must be owned
/// by the column Map on the calling process.
/// \param vals [in] Values to insert into the above columns.
///
/// For all k in 0, ..., <tt>cols.size()-1</tt>, insert the value
/// <tt>values[k]</tt> into entry <tt>(globalRow, cols[k])</tt> of
/// the matrix. If that entry already exists, add the new value
/// to the old value.
///
/// In order to call this method, the matrix must be locally
/// indexed, and it must have a column Map.
///
/// For better performance when filling entries into a sparse
/// matrix, consider the following tips:
/// <ol>
/// <li>When invoking the CrsMatrix constructor, give the best
/// possible upper bounds on the number of entries in each row
/// of the matrix. This will avoid expensive reallocation if
/// your bound was not large enough.</li>
/// <li>If your upper bound on the number of entries in each row
/// will always be correct, create the matrix with
/// StaticProfile. This uses a faster and more compact data
/// structure to store the matrix.</li>
/// <li>If you plan to reuse a matrix's graph structure, but
/// change its values, in repeated fillComplete() / resumeFill()
/// cycles, you can get the best performance by creating the
/// matrix with a const CrsGraph. Do this by using the
/// CrsMatrix constructor that accepts an RCP of a const
/// CrsGraph. If you do this, you must use the "replace" or
/// "sumInto" methods to change the values of the matrix; you
/// may not use insertGlobalValues() or
/// insertLocalValues().</li>
/// </ol>
void
insertLocalValues (const LocalOrdinal localRow,
const Teuchos::ArrayView<const LocalOrdinal> &cols,
const Teuchos::ArrayView<const Scalar> &vals);
/// \brief Epetra compatibility version of insertLocalValues (see
/// above) that takes arguments as raw pointers, rather than
/// Teuchos::ArrayView.
///
/// Arguments are the same and in the same order as
/// Epetra_CrsMatrix::InsertMyValues.
///
/// \param localRow [in] Local index of the row into which to
/// insert the entries.
/// \param numEnt [in] Number of entries to insert; number of
/// valid entries in \c vals and \c cols.
/// \param vals [in] Values to insert.
/// \param cols [in] Global indices of the columns into which
/// to insert the entries.
void
insertLocalValues (const LocalOrdinal localRow,
const LocalOrdinal numEnt,
const Scalar vals[],
const LocalOrdinal cols[]);
/// \brief Replace one or more entries' values, using global indices.
///
/// \param globalRow [in] Global index of the row in which to
/// replace the entries. This row <i>must</i> be owned by the
/// calling process.
/// \param inputInds [in] Kokkos::View of the global indices of
/// the columns in which to replace the entries.
/// \param inputVals [in] Kokkos::View of the values to use for
/// replacing the entries.
///
/// For all k in 0, ..., <tt>inputInds.dimension_0()-1</tt>,
/// replace the value at entry <tt>(globalRow, inputInds(k))</tt>
/// of the matrix with <tt>inputVals(k)</tt>. That entry must
/// exist in the matrix already.
///
/// If <tt>(globalRow, inputInds(k))</tt> corresponds to an entry
/// that is duplicated in this matrix row (likely because it was
/// inserted more than once and fillComplete() has not been called
/// in the interim), the behavior of this method is not defined.
///
/// \return The number of indices for which values were actually
/// replaced; the number of "correct" indices.
///
/// If the returned value N satisfies
///
/// <tt>0 <= N < inputInds.dimension_0()</tt>,
///
/// then <tt>inputInds.dimension_0() - N</tt> of the entries of
/// <tt>cols</tt> are not valid global column indices. If the
/// returned value is
/// <tt>Teuchos::OrdinalTraits<LocalOrdinal>::invalid()</tt>, then
/// at least one of the following is true:
/// <ul>
/// <li> <tt>! isFillActive ()</tt> </li>
/// <li> <tt> inputInds.dimension_0 () != inputVals.dimension_0 ()</tt> </li>
/// </ul>
template<class GlobalIndicesViewType,
class ImplScalarViewType>
LocalOrdinal
replaceGlobalValues (const GlobalOrdinal globalRow,
const typename UnmanagedView<GlobalIndicesViewType>::type& inputInds,
const typename UnmanagedView<ImplScalarViewType>::type& inputVals) const
{
// We use static_assert here to check the template parameters,
// rather than std::enable_if (e.g., on the return value, to
// enable compilation only if the template parameters match the
// desired attributes). This turns obscure link errors into
// clear compilation errors. It also makes the return value a
// lot easier to see.
static_assert (Kokkos::is_view<GlobalIndicesViewType>::value,
"First template parameter GlobalIndicesViewType must be "
"a Kokkos::View.");
static_assert (Kokkos::is_view<ImplScalarViewType>::value,
"Second template parameter ImplScalarViewType must be a "
"Kokkos::View.");
static_assert (static_cast<int> (GlobalIndicesViewType::rank) == 1,
"First template parameter GlobalIndicesViewType must "
"have rank 1.");
static_assert (static_cast<int> (ImplScalarViewType::rank) == 1,
"Second template parameter ImplScalarViewType must have "
"rank 1.");
static_assert (std::is_same<
typename GlobalIndicesViewType::non_const_value_type,
global_ordinal_type>::value,
"First template parameter GlobalIndicesViewType must "
"contain values of type global_ordinal_type.");
static_assert (std::is_same<
typename ImplScalarViewType::non_const_value_type,
impl_scalar_type>::value,
"Second template parameter ImplScalarViewType must "
"contain values of type impl_scalar_type.");
typedef LocalOrdinal LO;
typedef ImplScalarViewType ISVT;
typedef GlobalIndicesViewType GIVT;
if (! isFillActive () || staticGraph_.is_null ()) {
// Fill must be active and the graph must exist.
return Teuchos::OrdinalTraits<LO>::invalid ();
}
const RowInfo rowInfo = staticGraph_->getRowInfoFromGlobalRowIndex (globalRow);
if (rowInfo.localRow == Teuchos::OrdinalTraits<size_t>::invalid ()) {
// The input local row is invalid on the calling process,
// which means that the calling process summed 0 entries.
return static_cast<LO> (0);
}
auto curVals = this->getRowViewNonConst (rowInfo);
// output scalar view type
typedef typename std::decay<decltype (curVals)>::type OSVT;
return staticGraph_->template replaceGlobalValues<OSVT, GIVT, ISVT> (rowInfo,
curVals,
inputInds,
inputVals);
}
/// \brief Backwards compatibility version of replaceGlobalValues
/// (see above), that takes Teuchos::ArrayView (host pointers)
/// instead of Kokkos::View.
LocalOrdinal
replaceGlobalValues (const GlobalOrdinal globalRow,
const Teuchos::ArrayView<const GlobalOrdinal>& cols,
const Teuchos::ArrayView<const Scalar>& vals) const;
/// \brief Epetra compatibility version of replaceGlobalValues
/// (see above), that takes raw pointers instead of
/// Kokkos::View.
///
/// This version of the method takes the same arguments in the
/// same order as Epetra_CrsMatrix::ReplaceGlobalValues.
///
/// \param globalRow [in] Global index of the row in which to
/// replace the entries. This row <i>must</i> be owned by the
/// calling process.
/// \param numEnt [in] Number of entries to replace; number of
/// valid entries in \c vals and \c cols.
/// \param vals [in] Values to use for replacing the entries.
/// \param cols [in] Global indices of the columns in which to
/// replace the entries.
LocalOrdinal
replaceGlobalValues (const GlobalOrdinal globalRow,
const LocalOrdinal numEnt,
const Scalar vals[],
const GlobalOrdinal cols[]) const;
/// \brief Replace one or more entries' values, using local
/// row and column indices.
///
/// \param localRow [in] local index of the row in which to
/// replace the entries. This row <i>must</i> be owned by the
/// calling process.
/// \param cols [in] Local indices of the columns in which to
/// replace the entries.
/// \param vals [in] Values to use for replacing the entries.
///
/// For local row index \c localRow and local column indices
/// <tt>cols</tt>, do <tt>A(localRow, cols(k)) = vals(k)</tt>.
/// The row index and column indices must be valid on the calling
/// process, and all matrix entries <tt>A(localRow, cols(k))</tt>
/// must already exist. (This method does <i>not</i> change the
/// matrix's structure.) If the row index is valid, any invalid
/// column indices are ignored, but counted in the return value.
///
/// \return The number of indices for which values were actually
/// replaced; the number of "correct" indices.
///
/// If the returned value N satisfies
///
/// <tt>0 <= N < cols.dimension_0()</tt>,
///
/// then <tt>cols.dimension_0() - N</tt> of the entries of
/// <tt>cols</tt> are not valid local column indices. If the
/// returned value is
/// <tt>Teuchos::OrdinalTraits<LocalOrdinal>::invalid()</tt>,
/// then at least one of the following is true:
/// <ul>
/// <li> <tt>! isFillActive ()</tt> </li>
/// <li> <tt>! hasColMap ()</tt> </li>
/// <li> <tt> cols.dimension_0 () != vals.dimension_0 ()</tt> </li>
/// </ul>
template<class LocalIndicesViewType,
class ImplScalarViewType>
LocalOrdinal
replaceLocalValues (const LocalOrdinal localRow,
const typename UnmanagedView<LocalIndicesViewType>::type& inputInds,
const typename UnmanagedView<ImplScalarViewType>::type& inputVals) const
{
// We use static_assert here to check the template parameters,
// rather than std::enable_if (e.g., on the return value, to
// enable compilation only if the template parameters match the
// desired attributes). This turns obscure link errors into
// clear compilation errors. It also makes the return value a
// lot easier to see.
static_assert (Kokkos::is_view<LocalIndicesViewType>::value,
"First template parameter LocalIndicesViewType must be "
"a Kokkos::View.");
static_assert (Kokkos::is_view<ImplScalarViewType>::value,
"Second template parameter ImplScalarViewType must be a "
"Kokkos::View.");
static_assert (static_cast<int> (LocalIndicesViewType::rank) == 1,
"First template parameter LocalIndicesViewType must "
"have rank 1.");
static_assert (static_cast<int> (ImplScalarViewType::rank) == 1,
"Second template parameter ImplScalarViewType must have "
"rank 1.");
static_assert (std::is_same<
typename LocalIndicesViewType::non_const_value_type,
local_ordinal_type>::value,
"First template parameter LocalIndicesViewType must "
"contain values of type local_ordinal_type.");
static_assert (std::is_same<
typename ImplScalarViewType::non_const_value_type,
impl_scalar_type>::value,
"Second template parameter ImplScalarViewType must "
"contain values of type impl_scalar_type.");
typedef LocalOrdinal LO;
if (! isFillActive () || staticGraph_.is_null ()) {
// Fill must be active and the graph must exist.
return Teuchos::OrdinalTraits<LO>::invalid ();
}
const RowInfo rowInfo = staticGraph_->getRowInfo (localRow);
if (rowInfo.localRow == Teuchos::OrdinalTraits<size_t>::invalid ()) {
// The input local row is invalid on the calling process,
// which means that the calling process summed 0 entries.
return static_cast<LO> (0);
}
auto curVals = this->getRowViewNonConst (rowInfo);
typedef typename std::decay<decltype (curVals) >::type OSVT;
typedef typename UnmanagedView<LocalIndicesViewType>::type LIVT;
typedef typename UnmanagedView<ImplScalarViewType>::type ISVT;
return staticGraph_->template replaceLocalValues<OSVT, LIVT, ISVT> (rowInfo,
curVals,
inputInds,
inputVals);
}
/// \brief Backwards compatibility version of replaceLocalValues
/// (see above), that takes Teuchos::ArrayView (host pointers)
/// instead of Kokkos::View.
LocalOrdinal
replaceLocalValues (const LocalOrdinal localRow,
const Teuchos::ArrayView<const LocalOrdinal>& cols,
const Teuchos::ArrayView<const Scalar>& vals) const;
/// \brief Epetra compatibility version of replaceLocalValues,
/// that takes raw pointers instead of Kokkos::View.
///
/// This version of the method takes the same arguments in the
/// same order as Epetra_CrsMatrix::ReplaceMyValues.
///
/// \param localRow [in] local index of the row in which to
/// replace the entries. This row <i>must</i> be owned by the
/// calling process.
/// \param numEnt [in] Number of entries to replace; number of
/// valid entries in \c inputVals and \c inputCols.
/// \param inputVals [in] Values to use for replacing the entries.
/// \param inputCols [in] Local indices of the columns in which to
/// replace the entries.
///
/// \return The number of indices for which values were actually
/// replaced; the number of "correct" indices.
LocalOrdinal
replaceLocalValues (const LocalOrdinal localRow,
const LocalOrdinal numEnt,
const Scalar inputVals[],
const LocalOrdinal inputCols[]) const;
private:
/// \brief Whether sumIntoLocalValues and sumIntoGlobalValues
/// should use atomic updates by default.
///
/// \warning This is an implementation detail.
static const bool useAtomicUpdatesByDefault =
#ifdef KOKKOS_HAVE_SERIAL
! std::is_same<execution_space, Kokkos::Serial>::value;
#else
true;
#endif // KOKKOS_HAVE_SERIAL
public:
/// \brief Sum into one or more sparse matrix entries, using
/// global indices.
///
/// This is a local operation; it does not involve communication.
/// However, if you sum into rows not owned by the calling
/// process, it may result in future communication in
/// globalAssemble() (which is called by fillComplete()).
///
/// If \c globalRow is owned by the calling process, then this
/// method performs the sum-into operation right away. Otherwise,
/// if the row is <i>not</i> owned by the calling process, this
/// method defers the sum-into operation until globalAssemble().
/// That method communicates data for nonowned rows to the
/// processes that own those rows. Then, globalAssemble() does
/// one of the following:
/// <ul>
/// <li> It calls insertGlobalValues() for that data if the matrix
/// has a dynamic graph. </li>
/// <li> It calls sumIntoGlobalValues() for that data if the matrix
/// has a static graph. The matrix silently ignores
/// (row,column) pairs that do not exist in the graph.
/// </ul>
///
/// \param globalRow [in] The global index of the row in which to
/// sum into the matrix entries.
/// \param cols [in] One or more column indices.
/// \param vals [in] One or more values corresponding to those
/// column indices. <tt>vals[k]</tt> corresponds to
/// <tt>cols[k]</tt>.
/// \param atomic [in] Whether to use atomic updates.
///
/// \return The number of indices for which values were actually
/// modified; the number of "correct" indices.
///
/// This method has the same preconditions and return value
/// meaning as replaceGlobalValues() (which see).
LocalOrdinal
sumIntoGlobalValues (const GlobalOrdinal globalRow,
const Teuchos::ArrayView<const GlobalOrdinal>& cols,
const Teuchos::ArrayView<const Scalar>& vals,
const bool atomic = useAtomicUpdatesByDefault);
/// \brief Epetra compatibility version of sumIntoGlobalValues
/// (see above), that takes input as raw pointers instead of
/// Kokkos::View.
///
/// Arguments are the same and in the same order as those of
/// Epetra_CrsMatrix::SumIntoGlobalValues, except for \c atomic,
/// which is as above.
///
/// \param globalRow [in] The global index of the row in which to
/// sum into the matrix entries.
/// \param numEnt [in] Number of valid entries in \c vals and
/// \c cols. This has type \c LocalOrdinal because we assume
/// that users will never want to insert more column indices
/// in one call than the matrix has columns.
/// \param vals [in] \c numEnt values corresponding to the column
/// indices in \c cols. That is, \c vals[k] is the value
/// corresponding to \c cols[k].
/// \param cols [in] \c numEnt global column indices.
/// \param atomic [in] Whether to use atomic updates.
///
/// \return The number of indices for which values were actually
/// modified; the number of "correct" indices.
LocalOrdinal
sumIntoGlobalValues (const GlobalOrdinal globalRow,
const LocalOrdinal numEnt,
const Scalar vals[],
const GlobalOrdinal cols[],
const bool atomic = useAtomicUpdatesByDefault);
/// \brief Sum into one or more sparse matrix entries, using local
/// row and column indices.
///
/// For local row index \c localRow and local column indices
/// <tt>cols</tt>, perform the update <tt>A(localRow, cols[k]) +=
/// vals[k]</tt>. The row index and column indices must be valid
/// on the calling process, and all matrix entries <tt>A(localRow,
/// cols[k])</tt> must already exist. (This method does
/// <i>not</i> change the matrix's structure.) If the row index
/// is valid, any invalid column indices are ignored, but counted
/// in the return value.
///
/// This overload of the method takes the column indices and
/// values as Kokkos::View. See below for an overload that takes
/// Teuchos::ArrayView instead.
///
/// \tparam LocalIndicesViewType Kokkos::View specialization that
/// is a 1-D array of LocalOrdinal.
/// \tparam ImplScalarViewType Kokkos::View specialization that is
/// a 1-D array of impl_scalar_type (usually the same as Scalar,
/// unless Scalar is std::complex<T> for some T, in which case
/// it is Kokkos::complex<T>).
///
/// \param localRow [in] Local index of a row. This row
/// <i>must</i> be owned by the calling process.
/// \param cols [in] Local indices of the columns whose entries we
/// want to modify.
/// \param vals [in] Values corresponding to the above column
/// indices. <tt>vals(k)</tt> corresponds to <tt>cols(k)</tt>.
/// \param atomic [in] Whether to use atomic updates.
///
/// \return The number of indices for which values were actually
/// modified; the number of "correct" indices.
///
/// This method has the same preconditions and return value
/// meaning as replaceLocalValues() (which see).
template<class LocalIndicesViewType,
class ImplScalarViewType>
LocalOrdinal
sumIntoLocalValues (const LocalOrdinal localRow,
const typename UnmanagedView<LocalIndicesViewType>::type& inputInds,
const typename UnmanagedView<ImplScalarViewType>::type& inputVals,
const bool atomic = useAtomicUpdatesByDefault) const
{
// We use static_assert here to check the template parameters,
// rather than std::enable_if (e.g., on the return value, to
// enable compilation only if the template parameters match the
// desired attributes). This turns obscure link errors into
// clear compilation errors. It also makes the return value a
// lot easier to see.
static_assert (Kokkos::is_view<LocalIndicesViewType>::value,
"First template parameter LocalIndicesViewType must be "
"a Kokkos::View.");
static_assert (Kokkos::is_view<ImplScalarViewType>::value,
"Second template parameter ImplScalarViewType must be a "
"Kokkos::View.");
static_assert (static_cast<int> (LocalIndicesViewType::rank) == 1,
"First template parameter LocalIndicesViewType must "
"have rank 1.");
static_assert (static_cast<int> (ImplScalarViewType::rank) == 1,
"Second template parameter ImplScalarViewType must have "
"rank 1.");
static_assert (std::is_same<
typename LocalIndicesViewType::non_const_value_type,
local_ordinal_type>::value,
"First template parameter LocalIndicesViewType must "
"contain values of type local_ordinal_type.");
static_assert (std::is_same<
typename ImplScalarViewType::non_const_value_type,
impl_scalar_type>::value,
"Second template parameter ImplScalarViewType must "
"contain values of type impl_scalar_type.");
typedef LocalOrdinal LO;
if (! this->isFillActive () || this->staticGraph_.is_null ()) {
// Fill must be active and the graph must exist.
return Teuchos::OrdinalTraits<LO>::invalid ();
}
const RowInfo rowInfo = this->staticGraph_->getRowInfo (localRow);
if (rowInfo.localRow == Teuchos::OrdinalTraits<size_t>::invalid ()) {
// The input local row is invalid on the calling process,
// which means that the calling process summed 0 entries.
return static_cast<LO> (0);
}
auto curVals = this->getRowViewNonConst (rowInfo);
typedef typename std::remove_const<typename std::remove_reference<decltype (curVals)>::type>::type OSVT;
typedef typename UnmanagedView<LocalIndicesViewType>::type LIVT;
typedef typename UnmanagedView<ImplScalarViewType>::type ISVT;
return staticGraph_->template sumIntoLocalValues<OSVT, LIVT, ISVT> (rowInfo,
curVals,
inputInds,
inputVals,
atomic);
}
/// \brief Sum into one or more sparse matrix entries, using local
/// row and column indices.
///
/// For local row index \c localRow and local column indices
/// <tt>cols</tt>, perform the update <tt>A(localRow, cols[k]) +=
/// vals[k]</tt>. The row index and column indices must be valid
/// on the calling process, and all matrix entries <tt>A(localRow,
/// cols[k])</tt> must already exist. (This method does
/// <i>not</i> change the matrix's structure.) If the row index
/// is valid, any invalid column indices are ignored, but counted
/// in the return value.
///
/// This overload of the method takes the column indices and
/// values as Teuchos::ArrayView. See above for an overload that
/// takes Kokkos::View instead.
///
/// \param localRow [in] Local index of a row. This row
/// <i>must</i> be owned by the calling process.
/// \param cols [in] Local indices of the columns whose entries we
/// want to modify.
/// \param vals [in] Values corresponding to the above column
/// indices. <tt>vals[k]</tt> corresponds to <tt>cols[k]</tt>.
/// \param atomic [in] Whether to use atomic updates.
///
/// \return The number of indices for which values were actually
/// modified; the number of "correct" indices.
///
/// This method has the same preconditions and return value
/// meaning as replaceLocalValues() (which see).
LocalOrdinal
sumIntoLocalValues (const LocalOrdinal localRow,
const Teuchos::ArrayView<const LocalOrdinal>& cols,
const Teuchos::ArrayView<const Scalar>& vals,
const bool atomic = useAtomicUpdatesByDefault) const;
/// \brief Epetra compatibility version of sumIntoLocalValues (see
/// above) that takes raw pointers instead of Kokkos::View.
///
/// Arguments are the same and in the same order as
/// Epetra_CrsMatrix::SumIntoMyValues, except for the \c atomic
/// last argument, which is as above.
///
/// \param localRow [in] The local index of the row in which to
/// sum into the matrix entries.
/// \param numEnt [in] Number of valid entries in \c vals and
/// \c cols. This has type \c LocalOrdinal because we assume
/// that users will never want to insert more column indices
/// in one call than the matrix has columns.
/// \param vals [in] \c numEnt values corresponding to the column
/// indices in \c cols. That is, \c vals[k] is the value
/// corresponding to \c cols[k].
/// \param cols [in] \c numEnt local column indices.
/// \param atomic [in] Whether to use atomic updates.
///
/// \return The number of indices for which values were actually
/// modified; the number of "correct" indices.
LocalOrdinal
sumIntoLocalValues (const LocalOrdinal localRow,
const LocalOrdinal numEnt,
const Scalar vals[],
const LocalOrdinal cols[],
const bool atomic = useAtomicUpdatesByDefault) const;
/// \brief Transform CrsMatrix entries in place, using local
/// indices to select the entries in the row to transform.
///
/// For every entry \f$A(i,j)\f$ to transform, if \f$v_{ij}\f$ is
/// the corresponding entry of the \c inputVals array, then we
/// apply the binary function f to \f$A(i,j)\f$ as follows:
/// \f[
/// A(i,j) := f(A(i,j), v_{ij}).
/// \f]
/// For example, BinaryFunction = std::plus<impl_scalar_type> does
/// the same thing as sumIntoLocalValues, and BinaryFunction =
/// project2nd<impl_scalar_type,impl_scalar_type> does the same
/// thing as replaceLocalValues. (It is generally more efficient
/// to call sumIntoLocalValues resp. replaceLocalValues than to do
/// this.)
///
/// This overload of the method takes the column indices and
/// values as Kokkos::View. See below for an overload that takes
/// Teuchos::ArrayView instead.
///
/// \tparam LocalIndicesViewType Kokkos::View specialization that
/// is a 1-D array of LocalOrdinal.
/// \tparam ImplScalarViewType Kokkos::View specialization that is
/// a 1-D array of impl_scalar_type (usually the same as Scalar,
/// unless Scalar is std::complex<T> for some T, in which case
/// it is Kokkos::complex<T>).
/// \tparam BinaryFunction The type of the binary function f to
/// use for updating the sparse matrix's value(s). This should
/// be convertible to
/// std::function<impl_scalar_type (const impl_scalar_type&,
/// const impl_scalar_type&)>.
///
/// \param localRow [in] (Local) index of the row to modify.
/// This row <i>must</t> be owned by the calling process. (This
/// is a stricter requirement than for sumIntoGlobalValues.)
/// \param inputInds [in] (Local) indices in the row to modify.
/// Indices not in the row on the calling process, and their
/// corresponding values, will be ignored.
/// \param inputVals [in] Values to use for modification.
/// \param f [in] The binary function to use for updating the
/// sparse matrix's value. It takes two \c impl_scalar_type
/// values and returns \c impl_scalar_type.
/// \pparam atomic [in] Whether to use atomic updates.
template<class LocalIndicesViewType,
class ImplScalarViewType,
class BinaryFunction>
LocalOrdinal
transformLocalValues (const LocalOrdinal localRow,
const typename UnmanagedView<LocalIndicesViewType>::type& inputInds,
const typename UnmanagedView<ImplScalarViewType>::type& inputVals,
BinaryFunction f,
const bool atomic = useAtomicUpdatesByDefault) const
{
// We use static_assert here to check the template parameters,
// rather than std::enable_if (e.g., on the return value, to
// enable compilation only if the template parameters match the
// desired attributes). This turns obscure link errors into
// clear compilation errors. It also makes the return value a
// lot easier to see.
static_assert (Kokkos::is_view<LocalIndicesViewType>::value,
"First template parameter LocalIndicesViewType must be "
"a Kokkos::View.");
static_assert (Kokkos::is_view<ImplScalarViewType>::value,
"Second template parameter ImplScalarViewType must be a "
"Kokkos::View.");
static_assert (static_cast<int> (LocalIndicesViewType::rank) == 1,
"First template parameter LocalIndicesViewType must "
"have rank 1.");
static_assert (static_cast<int> (ImplScalarViewType::rank) == 1,
"Second template parameter ImplScalarViewType must have "
"rank 1.");
static_assert (std::is_same<
typename LocalIndicesViewType::non_const_value_type,
local_ordinal_type>::value,
"First template parameter LocalIndicesViewType must "
"contain values of type local_ordinal_type.");
static_assert (std::is_same<
typename ImplScalarViewType::non_const_value_type,
impl_scalar_type>::value,
"Second template parameter ImplScalarViewType must "
"contain values of type impl_scalar_type.");
typedef LocalOrdinal LO;
typedef BinaryFunction BF;
if (! isFillActive () || staticGraph_.is_null ()) {
// Fill must be active and the "nonconst" graph must exist.
return Teuchos::OrdinalTraits<LO>::invalid ();
}
const RowInfo rowInfo = staticGraph_->getRowInfo (localRow);
if (rowInfo.localRow == Teuchos::OrdinalTraits<size_t>::invalid ()) {
// The calling process does not own this row, so it is not
// allowed to modify its values.
return static_cast<LO> (0);
}
auto curRowVals = this->getRowViewNonConst (rowInfo);
typedef typename std::decay<decltype (curRowVals) >::type OSVT;
typedef typename UnmanagedView<LocalIndicesViewType>::type LIVT;
typedef typename UnmanagedView<ImplScalarViewType>::type ISVT;
return staticGraph_->template transformLocalValues<OSVT, LIVT, ISVT, BF> (rowInfo,
curRowVals,
inputInds,
inputVals,
f, atomic);
}
/// \brief Transform CrsMatrix entries in place, using global
/// indices to select the entries in the row to transform.
///
/// For every entry \f$A(i,j)\f$ to transform, if \f$v_{ij}\f$ is
/// the corresponding entry of the \c inputVals array, then we
/// apply the binary function f to \f$A(i,j)\f$ as follows:
/// \f[
/// A(i,j) := f(A(i,j), v_{ij}).
/// \f]
/// For example, BinaryFunction = std::plus<impl_scalar_type> does
/// the same thing as sumIntoLocalValues, and BinaryFunction =
/// project2nd<impl_scalar_type,impl_scalar_type> does the same
/// thing as replaceLocalValues. (It is generally more efficient
/// to call sumIntoLocalValues resp. replaceLocalValues than to do
/// this.)
///
/// \tparam BinaryFunction The type of the binary function f to
/// use for updating the sparse matrix's value(s). This should
/// be convertible to
/// std::function<impl_scalar_type (const impl_scalar_type&,
/// const impl_scalar_type&)>.
/// \tparam InputMemorySpace Kokkos memory space / device in which
/// the input data live. This may differ from the memory space
/// in which the current matrix's row's values live.
///
/// \param globalRow [in] (Global) index of the row to modify.
/// This row <i>must</t> be owned by the calling process. (This
/// is a stricter requirement than for sumIntoGlobalValues.)
/// \param inputInds [in] (Global) indices in the row to modify.
/// Indices not in the row on the calling process, and their
/// corresponding values, will be ignored.
/// \param inputVals [in] Values to use for modification.
///
/// This method works whether indices are local or global.
/// However, it will cost more if indices are local, since it will
/// have to convert the input global indices to local indices in
/// that case.
template<class BinaryFunction, class InputMemorySpace>
LocalOrdinal
transformGlobalValues (const GlobalOrdinal globalRow,
const Kokkos::View<const GlobalOrdinal*,
InputMemorySpace,
Kokkos::MemoryUnmanaged>& inputInds,
const Kokkos::View<const impl_scalar_type*,
InputMemorySpace,
Kokkos::MemoryUnmanaged>& inputVals,
BinaryFunction f,
const bool atomic = useAtomicUpdatesByDefault) const
{
using Kokkos::MemoryUnmanaged;
using Kokkos::View;
typedef impl_scalar_type ST;
typedef BinaryFunction BF;
typedef device_type DD;
typedef InputMemorySpace ID;
if (! isFillActive () || staticGraph_.is_null ()) {
// Fill must be active and the "nonconst" graph must exist.
return Teuchos::OrdinalTraits<LocalOrdinal>::invalid ();
}
const RowInfo rowInfo =
staticGraph_->getRowInfoFromGlobalRowIndex (globalRow);
if (rowInfo.localRow == Teuchos::OrdinalTraits<size_t>::invalid ()) {
// The calling process does not own this row, so it is not
// allowed to modify its values.
return static_cast<LocalOrdinal> (0);
}
auto curRowVals = this->getRowViewNonConst (rowInfo);
return staticGraph_->template transformGlobalValues<ST, BF, ID, DD> (rowInfo,
curRowVals,
inputInds,
inputVals,
f, atomic);
}
//! Set all matrix entries equal to \c alpha.
void setAllToScalar (const Scalar& alpha);
//! Scale the matrix's values: <tt>this := alpha*this</tt>.
void scale (const Scalar& alpha);
/// \brief Set the local matrix using three (compressed sparse row) arrays.
///
/// \pre <tt>hasColMap() == true</tt>
/// \pre <tt>getGraph() != Teuchos::null</tt>
/// \pre No insert/sum routines have been called
///
/// \warning This is for EXPERT USE ONLY. We make NO PROMISES of
/// backwards compatibility.
///
/// This method behaves like the CrsMatrix constructor that takes
/// a const CrsGraph. It fixes the matrix's graph, but does not
/// call fillComplete on the matrix. The graph might not
/// necessarily be fill complete, but it must have a local graph.
///
/// The input arguments might be used directly (shallow copy), or
/// they might be (deep) copied.
///
/// \param ptr [in] Array of row offsets.
/// \param ind [in] Array of (local) column indices.
/// \param val [in/out] Array of values. This is in/out because
/// the matrix reserves the right to take this argument by
/// shallow copy. Any method that changes the matrix's values
/// may then change this.
void
setAllValues (const typename local_matrix_type::row_map_type& ptr,
const typename local_graph_type::entries_type::non_const_type& ind,
const typename local_matrix_type::values_type& val);
/// \brief Set the local matrix using three (compressed sparse row) arrays.
///
/// \pre <tt>hasColMap() == true</tt>
/// \pre <tt>getGraph() != Teuchos::null</tt>
/// \pre No insert/sum routines have been called
///
/// \warning This is for EXPERT USE ONLY. We make NO PROMISES of
/// backwards compatibility.
///
/// This method behaves like the CrsMatrix constructor that takes
/// a const CrsGraph. It fixes the matrix's graph, but does not
/// call fillComplete on the matrix. The graph might not
/// necessarily be fill complete, but it must have a local graph.
///
/// The input arguments might be used directly (shallow copy), or
/// they might be (deep) copied.
///
/// \param ptr [in] Array of row offsets.
/// \param ind [in] Array of (local) column indices.
/// \param val [in/out] Array of values. This is in/out because
/// the matrix reserves the right to take this argument by
/// shallow copy. Any method that changes the matrix's values
/// may then change this.
void
setAllValues (const Teuchos::ArrayRCP<size_t>& ptr,
const Teuchos::ArrayRCP<LocalOrdinal>& ind,
const Teuchos::ArrayRCP<Scalar>& val);
void
getAllValues (Teuchos::ArrayRCP<const size_t>& rowPointers,
Teuchos::ArrayRCP<const LocalOrdinal>& columnIndices,
Teuchos::ArrayRCP<const Scalar>& values) const;
//@}
//! @name Transformational methods
//@{
/// \brief Communicate nonlocal contributions to other processes.
///
/// Users do not normally need to call this method. fillComplete
/// always calls this method, unless you specifically tell
/// fillComplete to do otherwise by setting its "No Nonlocal
/// Changes" parameter to \c true. Thus, it suffices to call
/// fillComplete.
///
/// Methods like insertGlobalValues and sumIntoGlobalValues let
/// you add or modify entries in rows that are not owned by the
/// calling process. These entries are called "nonlocal
/// contributions." The methods that allow nonlocal contributions
/// store the entries on the calling process, until globalAssemble
/// is called. globalAssemble sends these nonlocal contributions
/// to the process(es) that own them, where they then become part
/// of the matrix.
///
/// This method only does global assembly if there are nonlocal
/// entries on at least one process. It does an all-reduce to
/// find that out. If not, it returns early, without doing any
/// more communication or work.
///
/// If you previously inserted into a row which is not owned by
/// <i>any</i> process in the row Map, the behavior of this method
/// is undefined. It may detect the invalid row indices and throw
/// an exception, or it may silently drop the entries inserted
/// into invalid rows. Behavior may vary, depending on whether
/// Tpetra was built with debug checking enabled.
void globalAssemble();
/// \brief Resume operations that may change the values or
/// structure of the matrix.
///
/// This method must be called as a collective operation.
///
/// Calling fillComplete "freezes" both the values and the
/// structure of the matrix. If you want to modify the matrix
/// again, you must first call resumeFill. You then may not call
/// resumeFill again on that matrix until you first call
/// fillComplete. You may make sequences of fillComplete,
/// resumeFill calls as many times as you wish.
///
/// \post <tt>isFillActive() && ! isFillComplete()</tt>
void resumeFill (const Teuchos::RCP<Teuchos::ParameterList>& params = Teuchos::null);
/// \brief Tell the matrix that you are done changing its
/// structure or values, and that you are ready to do
/// computational kernels (e.g., sparse matrix-vector multiply)
/// with it.
///
/// This tells the graph to optimize its data structures for
/// computational kernels, and to prepare (MPI) communication
/// patterns.
///
/// Off-process indices are distributed (via globalAssemble()),
/// indices are sorted, redundant indices are fused, and global
/// indices are transformed to local indices.
///
/// \warning The domain Map and row Map arguments to this method
/// MUST be one to one! If you have Maps that are not one to
/// one, and you do not know how to make a Map that covers the
/// same global indices but <i>is</i> one to one, then you may
/// call Tpetra::createOneToOne() (see Map's header file) to
/// make a one-to-one version of your Map.
///
/// \pre <tt> isFillActive() && ! isFillComplete() </tt>
/// \post <tt> ! isFillActive() && isFillComplete() </tt>
///
/// \param domainMap [in] The matrix's domain Map. MUST be one to
/// one!
/// \param rangeMap [in] The matrix's range Map. MUST be one to
/// one! May be, but need not be, the same as the domain Map.
/// \param params [in/out] List of parameters controlling this
/// method's behavior. See below for valid parameters.
///
/// List of valid parameters in <tt>params</tt>:
/// <ul>
/// <li> "No Nonlocal Changes" (\c bool): Default is false. If
/// true, the caller promises that no modifications to
/// nonowned rows have happened on any process since the last
/// call to fillComplete. This saves a global all-reduce to
/// check whether any process did a nonlocal insert.
/// Nonlocal changes include any sumIntoGlobalValues or
/// insertGlobalValues call with a row index that is not in
/// the row Map of the calling process.
/// </li>
///
/// <li> "Sort column Map ghost GIDs" (\c bool): Default is true.
/// makeColMap() (which fillComplete may call) always groups
/// remote GIDs by process rank, so that all remote GIDs with
/// the same owning rank occur contiguously. By default, it
/// always sorts remote GIDs in increasing order within those
/// groups. This behavior differs from Epetra, which does
/// not sort remote GIDs with the same owning process. If
/// you don't want to sort (for compatibility with Epetra),
/// set this parameter to \c false. This parameter only
/// takes effect if the matrix owns the graph. This is an
/// expert mode parameter ONLY. We make no promises about
/// backwards compatibility of this parameter. It may change
/// or disappear at any time.
/// </li>
/// </ul>
void
fillComplete (const Teuchos::RCP<const map_type>& domainMap,
const Teuchos::RCP<const map_type>& rangeMap,
const Teuchos::RCP<Teuchos::ParameterList>& params = Teuchos::null);
/// \brief Tell the matrix that you are done changing its
/// structure or values, and that you are ready to do
/// computational kernels (e.g., sparse matrix-vector multiply)
/// with it. Set default domain and range Maps.
///
/// See above three-argument version of fillComplete for full
/// documentation. If the matrix does not yet have domain and
/// range Maps (i.e., if fillComplete has not yet been called on
/// this matrix at least once), then this method uses the matrix's
/// row Map (result of this->getRowMap()) as both the domain Map
/// and the range Map. Otherwise, this method uses the matrix's
/// existing domain and range Maps.
///
/// \warning It is only valid to call this overload of
/// fillComplete if the row Map is one to one! If the row Map
/// is NOT one to one, you must call the above three-argument
/// version of fillComplete, and supply one-to-one domain and
/// range Maps. If you have Maps that are not one to one, and
/// you do not know how to make a Map that covers the same
/// global indices but <i>is</i> one to one, then you may call
/// Tpetra::createOneToOne() (see Map's header file) to make a
/// one-to-one version of your Map.
///
/// \param params [in/out] List of parameters controlling this
/// method's behavior. See documentation of the three-argument
/// version of fillComplete (above) for valid parameters.
void
fillComplete (const Teuchos::RCP<Teuchos::ParameterList>& params = Teuchos::null);
/// \brief Perform a fillComplete on a matrix that already has data.
///
/// The matrix must already have filled local 1-D storage
/// (k_clInds1D_ and k_rowPtrs_ for the graph, and k_values1D_ in
/// the matrix). If the matrix has been constructed in any other
/// way, this method will throw an exception. This routine is
/// needed to support other Trilinos packages and should not be
/// called by ordinary users.
///
/// \warning This method is intended for expert developer use
/// only, and should never be called by user code.
///
/// \param domainMap [in] The matrix's domain Map. MUST be one to
/// one!
/// \param rangeMap [in] The matrix's range Map. MUST be one to
/// one! May be, but need not be, the same as the domain Map.
/// \param importer [in] Import from the matrix's domain Map to
/// its column Map. If no Import is necessary (i.e., if the
/// domain and column Maps are the same, in the sense of
/// Tpetra::Map::isSameAs), then this may be Teuchos::null.
/// \param exporter [in] Export from the matrix's row Map to its
/// range Map. If no Export is necessary (i.e., if the row and
/// range Maps are the same, in the sense of
/// Tpetra::Map::isSameAs), then this may be Teuchos::null.
/// \param params [in/out] List of parameters controlling this
/// method's behavior.
void
expertStaticFillComplete (const Teuchos::RCP<const map_type>& domainMap,
const Teuchos::RCP<const map_type>& rangeMap,
const Teuchos::RCP<const import_type>& importer = Teuchos::null,
const Teuchos::RCP<const export_type>& exporter = Teuchos::null,
const Teuchos::RCP<Teuchos::ParameterList>& params = Teuchos::null);
/// \brief Replace the matrix's column Map with the given Map.
///
/// \param newColMap [in] New column Map. Must be nonnull.
///
/// \pre The matrix must have no entries inserted yet, on any
/// process in the row Map's communicator.
///
/// \pre The matrix must not have been created with a constant
/// (a.k.a. "static") CrsGraph.
void
replaceColMap (const Teuchos::RCP<const map_type>& newColMap);
/// \brief Reindex the column indices in place, and replace the
/// column Map. Optionally, replace the Import object as well.
///
/// \pre The matrix is <i>not</i> fill complete:
/// <tt>! this->isFillComplete() </tt>.
/// \pre Either the input graph is \c NULL, or it is <i>not</i>
/// fill complete:
/// <tt>graph == NULL || ! graph->isFillComplete()</tt>.
/// \pre On every calling process, every index owned by the
/// current column Map must also be owned by the new column Map.
/// \pre If the new Import object is provided, the new Import
/// object's source Map must be the same as the current domain
/// Map, and the new Import's target Map must be the same as the
/// new column Map.
///
/// \param graph [in] The matrix's graph. If you don't provide
/// this (i.e., if <tt>graph == NULL</tt>), then the matrix must
/// own its graph, which will be modified in place. (That is,
/// you must <i>not</i> have created the matrix with a constant
/// graph.) If you <i>do</i> provide this, then the method will
/// assume that it is the same graph as the matrix's graph, and
/// the provided graph will be modified in place.
/// \param newColMap [in] New column Map. Must be nonnull.
/// \param newImport [in] New Import object. Optional; computed
/// if not provided or if null. Computing an Import is
/// expensive, so it is worth providing this if you can.
/// \param sortEachRow [in] If true, sort the indices (and their
/// corresponding values) in each row after reindexing.
///
/// Why would you want to use this method? Well, for example, you
/// might need to use an Ifpack2 preconditioner that only accepts
/// a matrix with a certain kind of column Map. Your matrix has
/// the wrong kind of column Map, but you know how to compute the
/// right kind of column Map. You might also know an efficient
/// way to compute an Import object from the current domain Map to
/// the new column Map. (For an instance of the latter, see the
/// Details::makeOptimizedColMapAndImport function in
/// Tpetra_Details_makeOptimizedColMap.hpp.)
///
/// Suppose that you created this CrsMatrix with a constant graph;
/// that is, that you called the CrsMatrix constructor that takes
/// a CrsGraph as input:
///
/// \code
/// RCP<CrsGraph<> > G (new CrsGraph<> (rowMap, origColMap, ...));
/// // ... fill G ...
/// G->fillComplete (domMap, ranMap);
/// CrsMatrix<> A (G);
/// // ... fill A ...
/// \endcode
///
/// Now suppose that you want to give A to a preconditioner that
/// can't handle a matrix with an arbitrary column Map (in the
/// example above, <tt>origColMap</tt>). You first must create a
/// new suitable column Map <tt>newColMap</tt>, and optionally a
/// new Import object <tt>newImport</tt> from the matrix's current
/// domain Map to the new column Map. Then, call this method,
/// passing in G (which must <i>not</i> be fill complete) while
/// the matrix is <i>not</i> fill complete. Be sure to save the
/// graph's <i>original</i> Import object; you'll need that later.
///
/// \code
/// RCP<const CrsGraph<>::import_type> origImport = G->getImporter ();
/// G->resumeFill ();
/// A.reindexColumns (G.getRawPtr (), newColMap, newImport);
/// G.fillComplete (domMap, ranMap);
/// A.fillComplete (domMap, ranMap);
/// \endcode
///
/// Now you may give the matrix A to the preconditioner in
/// question. After doing so, and after you solve the linear
/// system using the preconditioner, you might want to put the
/// matrix back like it originally was. You can do that, too!
///
/// \code
/// A.resumeFill ();
/// G->resumeFill ();
/// A.reindexColumns (G.getRawPtr (), origColMap, origImport);
/// G->fillComplete (domMap, ranMap);
/// A->fillComplete (domMap, ranMap);
/// \endcode
void
reindexColumns (crs_graph_type* const graph,
const Teuchos::RCP<const map_type>& newColMap,
const Teuchos::RCP<const import_type>& newImport = Teuchos::null,
const bool sortEachRow = true);
/// \brief Replace the current domain Map and Import with the given objects.
///
/// \param newDomainMap [in] New domain Map. Must be nonnull.
/// \param newImporter [in] Optional Import object. If null, we
/// will compute it.
///
/// \pre The matrix must be fill complete:
/// <tt>isFillComplete() == true</tt>.
/// \pre If the Import is provided, its target Map must be the
/// same as the column Map of the matrix.
/// \pre If the Import is provided, its source Map must be the
/// same as the provided new domain Map.
void
replaceDomainMapAndImporter (const Teuchos::RCP<const map_type>& newDomainMap,
Teuchos::RCP<const import_type>& newImporter);
/// \brief Remove processes owning zero rows from the Maps and their communicator.
///
/// \warning This method is ONLY for use by experts. We highly
/// recommend using the nonmember function of the same name
/// defined in Tpetra_DistObject_decl.hpp.
///
/// \warning We make NO promises of backwards compatibility.
/// This method may change or disappear at any time.
///
/// \param newMap [in] This <i>must</i> be the result of calling
/// the removeEmptyProcesses() method on the row Map. If it
/// is not, this method's behavior is undefined. This pointer
/// will be null on excluded processes.
virtual void
removeEmptyProcessesInPlace (const Teuchos::RCP<const map_type>& newMap);
//@}
//! @name Methods implementing RowMatrix
//@{
//! The communicator over which the matrix is distributed.
Teuchos::RCP<const Teuchos::Comm<int> > getComm() const;
//! The Kokkos Node instance.
Teuchos::RCP<node_type> getNode () const;
//! The Map that describes the row distribution in this matrix.
Teuchos::RCP<const map_type> getRowMap () const;
//! The Map that describes the column distribution in this matrix.
Teuchos::RCP<const map_type> getColMap () const;
//! This matrix's graph, as a RowGraph.
Teuchos::RCP<const RowGraph<LocalOrdinal, GlobalOrdinal, Node> > getGraph () const;
//! This matrix's graph, as a CrsGraph.
Teuchos::RCP<const crs_graph_type> getCrsGraph () const;
//! The local sparse matrix.
local_matrix_type getLocalMatrix () const {return lclMatrix_; }
/// \brief Number of global elements in the row map of this matrix.
///
/// This is <it>not</it> the number of rows in the matrix as a
/// mathematical object. This method returns the global sum of
/// the number of local elements in the row map on each processor,
/// which is the row map's getGlobalNumElements(). Since the row
/// map is not one-to-one in general, that global sum could be
/// different than the number of rows in the matrix. If you want
/// the number of rows in the matrix, ask the range map for its
/// global number of elements, using the following code:
/// <code>
/// global_size_t globalNumRows = getRangeMap()->getGlobalNumElements();
/// </code>
/// This method retains the behavior of Epetra, which also asks
/// the row map for the global number of rows, rather than asking
/// the range map.
///
/// \warning Undefined if isFillActive().
///
global_size_t getGlobalNumRows() const;
/// \brief The number of global columns in the matrix.
///
/// This equals the number of entries in the matrix's domain Map.
///
/// \warning Undefined if isFillActive().
global_size_t getGlobalNumCols() const;
/// \brief The number of matrix rows owned by the calling process.
///
/// Note that the sum of all the return values over all processes
/// in the row Map's communicator does not necessarily equal the
/// global number of rows in the matrix, if the row Map is
/// overlapping.
size_t getNodeNumRows() const;
/// \brief The number of columns connected to the locally owned rows of this matrix.
///
/// Throws std::runtime_error if <tt>! hasColMap ()</tt>.
size_t getNodeNumCols() const;
//! The index base for global indices for this matrix.
GlobalOrdinal getIndexBase() const;
//! The global number of entries in this matrix.
global_size_t getGlobalNumEntries() const;
//! The local number of entries in this matrix.
size_t getNodeNumEntries() const;
//! \brief Returns the current number of entries on this node in the specified global row.
/*! Returns OrdinalTraits<size_t>::invalid() if the specified global row does not belong to this matrix. */
size_t getNumEntriesInGlobalRow (GlobalOrdinal globalRow) const;
//! Returns the current number of entries on this node in the specified local row.
/*! Returns OrdinalTraits<size_t>::invalid() if the specified local row is not valid for this matrix. */
size_t getNumEntriesInLocalRow (LocalOrdinal localRow) const;
//! \brief Returns the number of global diagonal entries, based on global row/column index comparisons.
/** Undefined if isFillActive().
*/
global_size_t getGlobalNumDiags() const;
//! \brief Returns the number of local diagonal entries, based on global row/column index comparisons.
/** Undefined if isFillActive().
*/
size_t getNodeNumDiags() const;
//! \brief Returns the maximum number of entries across all rows/columns on all nodes.
/** Undefined if isFillActive().
*/
size_t getGlobalMaxNumRowEntries() const;
//! \brief Returns the maximum number of entries across all rows/columns on this node.
/** Undefined if isFillActive().
*/
size_t getNodeMaxNumRowEntries() const;
//! \brief Indicates whether the matrix has a well-defined column map.
bool hasColMap() const;
//! \brief Indicates whether the matrix is lower triangular.
/** Undefined if isFillActive().
*/
bool isLowerTriangular() const;
//! \brief Indicates whether the matrix is upper triangular.
/** Undefined if isFillActive().
*/
bool isUpperTriangular() const;
/// \brief Whether the matrix is locally indexed on the calling process.
///
/// The matrix is locally indexed on the calling process if and
/// only if all of the following hold:
/// <ol>
/// <li> The matrix is not empty on the calling process </li>
/// <li> The matrix has a column Map </li>
/// </ol>
///
/// The following is always true:
/// \code
/// (! locallyIndexed() && ! globallyIndexed()) || (locallyIndexed() || globallyIndexed());
/// \endcode
/// That is, a matrix may be neither locally nor globally indexed,
/// but it can never be both. Furthermore a matrix that is not
/// fill complete, might have some processes that are neither
/// locally nor globally indexed, and some processes that are
/// globally indexed. The processes that are neither do not have
/// any entries.
bool isLocallyIndexed() const;
/// \brief Whether the matrix is globally indexed on the calling process.
///
/// The matrix is globally indexed on the calling process if and
/// only if all of the following hold:
/// <ol>
/// <li> The matrix is not empty on the calling process </li>
/// <li> The matrix does not yet have a column Map </li>
/// </ol>
///
/// The following is always true:
/// \code
/// (! locallyIndexed() && ! globallyIndexed()) || (locallyIndexed() || globallyIndexed());
/// \endcode
/// That is, a matrix may be neither locally nor globally indexed,
/// but it can never be both. Furthermore a matrix that is not
/// fill complete, might have some processes that are neither
/// locally nor globally indexed, and some processes that are
/// globally indexed. The processes that are neither do not have
/// any entries.
bool isGloballyIndexed() const;
/// \brief Whether the matrix is fill complete.
///
/// A matrix is <i>fill complete</i> (or "in compute mode") when
/// fillComplete() has been called without an intervening call to
/// resumeFill(). A matrix must be fill complete in order to call
/// computational kernels like sparse matrix-vector multiply and
/// sparse triangular solve. A matrix must be <i>not</i> fill
/// complete ("in edit mode") in order to call methods that
/// insert, modify, or remove entries.
///
/// The following are always true:
/// <ul>
/// <li> <tt> isFillActive() == ! isFillComplete() </tt>
/// <li> <tt> isFillActive() || isFillComplete() </tt>
/// </ul>
///
/// A matrix starts out (after its constructor returns) as not
/// fill complete. It becomes fill complete after fillComplete()
/// returns, and becomes not fill complete again if resumeFill()
/// is called. Some methods like clone() and some of the
/// "nonmember constructors" (like importAndFillComplete() and
/// exportAndFillComplete()) may return a fill-complete matrix.
bool isFillComplete() const;
/// \brief Whether the matrix is not fill complete.
///
/// A matrix is <i>fill complete</i> (or "in compute mode") when
/// fillComplete() has been called without an intervening call to
/// resumeFill(). A matrix must be fill complete in order to call
/// computational kernels like sparse matrix-vector multiply and
/// sparse triangular solve. A matrix must be <i>not</i> fill
/// complete ("in edit mode") in order to call methods that
/// insert, modify, or remove entries.
///
/// The following are always true:
/// <ul>
/// <li> <tt> isFillActive() == ! isFillComplete() </tt>
/// <li> <tt> isFillActive() || isFillComplete() </tt>
/// </ul>
///
/// A matrix starts out (after its constructor returns) as not
/// fill complete. It becomes fill complete after fillComplete()
/// returns, and becomes not fill complete again if resumeFill()
/// is called. Some methods like clone() and some of the
/// "nonmember constructors" (like importAndFillComplete() and
/// exportAndFillComplete()) may return a fill-complete matrix.
bool isFillActive() const;
//! \brief Returns \c true if storage has been optimized.
/**
Optimized storage means that the allocation of each row is equal to the
number of entries. The effect is that a pass through the matrix, i.e.,
during a mat-vec, requires minimal memory traffic. One limitation of
optimized storage is that no new indices can be added to the matrix.
*/
bool isStorageOptimized () const;
//! Returns \c true if the matrix was allocated with static data structures.
ProfileType getProfileType () const;
//! Indicates that the graph is static, so that new entries cannot be added to this matrix.
bool isStaticGraph () const;
/// \brief Compute and return the Frobenius norm of the matrix.
///
/// The Frobenius norm of the matrix is defined as
/// \f\[
/// \|A\|_F = \sqrt{\sum_{i,j} \|A(i,j)\|^2}.
/// \f\].
///
/// If the matrix is fill complete, then the computed value is
/// cached; the cache is cleared whenever resumeFill() is called.
/// Otherwise, the value is computed every time the method is
/// called.
mag_type getFrobeniusNorm () const;
/// \brief Return \c true if getLocalRowView() and
/// getGlobalRowView() are valid for this object.
virtual bool supportsRowViews () const;
/// \brief Fill given arrays with a deep copy of the locally owned
/// entries of the matrix in a given row, using global column
/// indices.
///
/// \param GlobalRow [in] Global index of the row for which to
/// return entries.
/// \param Indices [out] Global column indices corresponding to
/// values.
/// \param Values [out] Matrix values.
/// \param NumEntries [out] Number of entries.
///
/// \note To Tpetra developers: Discussion of whether to use
/// <tt>Scalar</tt> or <tt>impl_scalar_type</tt> for output
/// array of matrix values.
///
/// If \c Scalar differs from <tt>impl_scalar_type</tt>, as for
/// example with std::complex<T> and Kokkos::complex<T>, we must
/// choose which type to use. We must make the same choice as
/// RowMatrix does, else CrsMatrix won't compile, because it won't
/// implement a pure virtual method. We choose <tt>Scalar</tt>,
/// for the following reasons. First, <tt>Scalar</tt> is the
/// user's preferred type, and <tt>impl_scalar_type</tt> an
/// implementation detail that makes Tpetra work with Kokkos.
/// Second, Tpetra's public interface provides a host-only
/// interface, which eliminates some reasons for requiring
/// implementation-specific types like Kokkos::complex.
///
/// We do eventually want to put Tpetra methods in Kokkos kernels,
/// but we only <i>need</i> to put them in host kernels, since
/// Tpetra is a host-only interface. Users can still manually
/// handle conversion from <tt>Scalar</tt> to
/// <tt>impl_scalar_type</tt> for reductions.
///
/// The right thing to do would be to rewrite RowMatrix so that
/// getGlobalRowCopy is NOT inherited, but is implemented by a
/// pure virtual "hook" getGlobalRowCopyImpl. The latter takes
/// raw pointers. That would give us the freedom to overload
/// getGlobalRowCopy, which one normally can't do with virtual
/// methods. It would make sense for one getGlobalRowCopyImpl
/// method to implement both Teuchos::ArrayView and Kokos::View
/// versions of getGlobalRowCopy.
///
/// Note: A std::runtime_error exception is thrown if either
/// <tt>Indices</tt> or <tt>Values</tt> is not large enough to
/// hold the data associated with row \c GlobalRow. If row
/// <tt>GlobalRow</tt> is not owned by the calling process, then
/// \c Indices and \c Values are unchanged and \c NumIndices is
/// returned as Teuchos::OrdinalTraits<size_t>::invalid().
void
getGlobalRowCopy (GlobalOrdinal GlobalRow,
const Teuchos::ArrayView<GlobalOrdinal>& Indices,
const Teuchos::ArrayView<Scalar>& Values,
size_t& NumEntries) const;
/// \brief Fill given arrays with a deep copy of the locally owned
/// entries of the matrix in a given row, using local column
/// indices.
///
/// \param localRow [in] Local index of the row for which to
/// return entries.
/// \param colInds [out] Local column indices corresponding to
/// values.
/// \param vals [out] Matrix values.
/// \param numEntries [out] Number of entries returned.
///
/// Note: A std::runtime_error exception is thrown if either
/// <tt>colInds</tt> or \c vals is not large enough to hold the
/// data associated with row \c localRow. If row \c localRow is
/// not owned by the calling process, then <tt>colInds</tt> and
/// <tt>vals</tt> are unchanged and <tt>numEntries</tt> is
/// returned as Teuchos::OrdinalTraits<size_t>::invalid().
void
getLocalRowCopy (LocalOrdinal localRow,
const Teuchos::ArrayView<LocalOrdinal>& colInds,
const Teuchos::ArrayView<Scalar>& vals,
size_t& numEntries) const;
/// \brief Get a constant, nonpersisting view of a row of this
/// matrix, using global row and column indices.
///
/// \param GlobalRow [in] Global index of the row to view.
/// \param indices [out] On output: view of the global column
/// indices in the row.
/// \param values [out] On output: view of the values in the row.
///
/// \pre <tt>isLocallyIndexed () == false</tt>
/// \post <tt>indices.size () == this->getNumEntriesInGlobalRow (GlobalRow)</tt>
///
/// If \c GlobalRow is not a valid global row index on the calling
/// process, then \c indices is set to null.
void
getGlobalRowView (GlobalOrdinal GlobalRow,
Teuchos::ArrayView<const GlobalOrdinal>& indices,
Teuchos::ArrayView<const Scalar>& values) const;
/// \brief Get a constant, nonpersisting view of a row of this
/// matrix, using local row and column indices.
///
/// \param LocalRow [in] Local index of the row to view.
/// \param indices [out] On output: view of the local column
/// indices in the row.
/// \param values [out] On output: view of the values in the row.
///
/// \pre <tt>isGloballyIndexed () == false</tt>
/// \post <tt>indices.size () == this->getNumEntriesInLocalRow (LocalRow)</tt>
///
/// If \c LocalRow is not a valid local row index on the calling
/// process, then \c indices is set to null.
void
getLocalRowView (LocalOrdinal LocalRow,
Teuchos::ArrayView<const LocalOrdinal>& indices,
Teuchos::ArrayView<const Scalar>& values) const;
/// \brief Get a constant, nonpersisting, locally indexed view of
/// the given row of the matrix, using "raw" pointers instead of
/// Teuchos::ArrayView.
///
/// The returned views of the column indices and values are not
/// guaranteed to persist beyond the lifetime of <tt>this</tt>.
/// Furthermore, any changes to the indices or values, or any
/// intervening calls to fillComplete() or resumeFill(), may
/// invalidate the returned views.
///
/// This method only gets the entries in the given row that are
/// stored on the calling process. Note that if the matrix has an
/// overlapping row Map, it is possible that the calling process
/// does not store all the entries in that row.
///
/// \pre <tt>isLocallyIndexed () && supportsRowViews ()</tt>
/// \post <tt>numEnt == getNumEntriesInGlobalRow (LocalRow)</tt>
///
/// \param lclRow [in] Local index of the row.
/// \param numEnt [out] Number of entries in the row that are
/// stored on the calling process.
/// \param lclColInds [out] Local indices of the columns
/// corresponding to values.
/// \param vals [out] Matrix values.
///
/// \return Error code; zero on no error.
LocalOrdinal
getLocalRowViewRaw (const LocalOrdinal lclRow,
LocalOrdinal& numEnt,
const LocalOrdinal*& lclColInds,
const Scalar*& vals) const;
/// \brief Get a constant, nonpersisting view of a row of this
/// matrix, using local row and column indices, with raw
/// pointers.
///
/// The order of arguments exactly matches those of
/// Epetra_CrsMatrix::ExtractMyRowView.
///
/// \param lclRow [in] Local index of the row to view.
/// \param numEnt [out] On output: Number of entries in the row.
/// \param val [out] On successful output: View of the values in
/// the row. Output value is undefined if not successful.
/// \param ind [out] On successful output: View of the local
/// column indices in the row. Output value is undefined if not
/// successful.
///
/// \return Zero if successful, else a nonzero error code.
///
/// \pre <tt>isGloballyIndexed () == false</tt>
/// \post <tt>numEnt == this->getNumEntriesInLocalRow(lclRow)</tt>
///
/// The output number of entries in the row \c numEnt is safe to
/// be \c LocalOrdinal, because as long as the row does not
/// contain too many duplicate entries, the number of column
/// indices can always fit in \c LocalOrdinal. Otherwise, the
/// column Map would be incorrect.
LocalOrdinal
getLocalRowView (const LocalOrdinal lclRow,
LocalOrdinal& numEnt,
const impl_scalar_type*& val,
const LocalOrdinal*& ind) const;
/// \brief Get a constant, nonpersisting view of a row of this
/// matrix, using local row and column indices, with raw
/// pointers.
///
/// This overload exists only if Scalar differs from
/// impl_scalar_type. In that case, this overload takes a Scalar
/// pointer.
template<class OutputScalarType>
typename std::enable_if<! std::is_same<OutputScalarType, impl_scalar_type>::value &&
std::is_convertible<impl_scalar_type, OutputScalarType>::value,
LocalOrdinal>::type
getLocalRowView (const LocalOrdinal lclRow,
LocalOrdinal& numEnt,
const OutputScalarType*& val,
const LocalOrdinal*& ind) const
{
const impl_scalar_type* valTmp = NULL;
const LocalOrdinal err = this->getLocalRowView (lclRow, numEnt, valTmp, ind);
// Cast is legitimate because impl_scalar_type is convertible to
// OutputScalarType.
val = reinterpret_cast<const OutputScalarType*> (valTmp);
return err;
}
/// \brief Get a copy of the diagonal entries of the matrix.
///
/// This method returns a Vector with the same Map as this
/// matrix's row Map. On each process, it contains the diagonal
/// entries owned by the calling process.
void
getLocalDiagCopy (Vector<Scalar, LocalOrdinal, GlobalOrdinal, Node, classic>& diag) const;
/// \brief Get offsets of the diagonal entries in the matrix.
///
/// \warning This method is DEPRECATED. Call
/// CrsGraph::getLocalDiagOffsets, in particular the overload
/// that returns the offsets as a Kokkos::View.
///
/// \warning This method is only for expert users.
/// \warning We make no promises about backwards compatibility
/// for this method. It may disappear or change at any time.
/// \warning This method must be called collectively. We reserve
/// the right to do extra checking in a debug build that will
/// require collectives.
///
/// \pre The matrix must be locally indexed (which means that it
/// has a column Map).
/// \pre All diagonal entries of the matrix's graph must be
/// populated on this process. Results are undefined otherwise.
/// \post <tt>offsets.size() == getNodeNumRows()</tt>
///
/// This method creates an array of offsets of the local diagonal
/// entries in the matrix. This array is suitable for use in the
/// two-argument version of getLocalDiagCopy(). However, its
/// contents are not defined in any other context. For example,
/// you should not rely on offsets[i] being the index of the
/// diagonal entry in the views returned by getLocalRowView().
/// This may be the case, but it need not be. (For example, we
/// may choose to optimize the lookups down to the optimized
/// storage level, in which case the offsets will be computed with
/// respect to the underlying storage format, rather than with
/// respect to the views.)
///
/// Calling any of the following invalidates the output array:
/// <ul>
/// <li> insertGlobalValues() </li>
/// <li> insertLocalValues() </li>
/// <li> fillComplete() (with a dynamic graph) </li>
/// <li> resumeFill() (with a dynamic graph) </li>
/// </ul>
///
/// If the matrix has a const ("static") graph, and if that graph
/// is fill complete, then the offsets array remains valid through
/// calls to fillComplete() and resumeFill(). "Invalidates" means
/// that you must call this method again to recompute the offsets.
void getLocalDiagOffsets (Teuchos::ArrayRCP<size_t>& offsets) const;
/// \brief Variant of getLocalDiagCopy() that uses precomputed offsets.
///
/// \warning This method is only for expert users.
/// \warning We make no promises about backwards compatibility
/// for this method. It may disappear or change at any time.
///
/// This method uses the offsets of the diagonal entries, as
/// precomputed by the Kokkos::View overload of
/// getLocalDiagOffsets(), to speed up copying the diagonal of the
/// matrix. The offsets must be recomputed if any of the
/// following methods are called:
/// <ul>
/// <li> insertGlobalValues() </li>
/// <li> insertLocalValues() </li>
/// <li> fillComplete() (with a dynamic graph) </li>
/// <li> resumeFill() (with a dynamic graph) </li>
/// </ul>
///
/// If the matrix has a const ("static") graph, and if that graph
/// is fill complete, then the offsets array remains valid through
/// calls to fillComplete() and resumeFill().
void
getLocalDiagCopy (Vector<Scalar, LocalOrdinal, GlobalOrdinal, Node, classic>& diag,
const Kokkos::View<const size_t*, device_type,
Kokkos::MemoryUnmanaged>& offsets) const;
/// \brief Variant of getLocalDiagCopy() that uses precomputed offsets.
///
/// \warning This overload of the method is DEPRECATED. Call the
/// overload above that returns the offsets as a Kokkos::View.
/// \warning This method is only for expert users.
/// \warning We make no promises about backwards compatibility
/// for this method. It may disappear or change at any time.
///
/// This method uses the offsets of the diagonal entries, as
/// precomputed by getLocalDiagOffsets(), to speed up copying the
/// diagonal of the matrix. The offsets must be recomputed if any
/// of the following methods are called:
/// <ul>
/// <li> insertGlobalValues() </li>
/// <li> insertLocalValues() </li>
/// <li> fillComplete() (with a dynamic graph) </li>
/// <li> resumeFill() (with a dynamic graph) </li>
/// </ul>
///
/// If the matrix has a const ("static") graph, and if that graph
/// is fill complete, then the offsets array remains valid through
/// calls to fillComplete() and resumeFill().
void
getLocalDiagCopy (Vector<Scalar, LocalOrdinal, GlobalOrdinal, Node, classic>& diag,
const Teuchos::ArrayView<const size_t>& offsets) const;
/** \brief . */
void
leftScale (const Vector<Scalar, LocalOrdinal, GlobalOrdinal, Node, classic>& x);
/** \brief . */
void
rightScale (const Vector<Scalar, LocalOrdinal, GlobalOrdinal, Node, classic>& x);
//@}
//! @name Advanced templated methods
//@{
/// \brief Compute a sparse matrix-MultiVector product local to each process.
///
/// This method computes the <i>local</i> part of <tt>Y := beta*Y
/// + alpha*Op(A)*X</tt>, where <tt>Op(A)</tt> is either \f$A\f$,
/// \f$A^T\f$ (the transpose), or \f$A^H\f$ (the conjugate
/// transpose). "The local part" means that this method does no
/// communication between processes, even if this is necessary for
/// correctness of the matrix-vector multiply. Use the apply()
/// method if you want to compute the mathematical sparse
/// matrix-vector multiply.
///
/// This method is mainly of use to Tpetra developers, though some
/// users may find it helpful if they plan to reuse the result of
/// doing an Import on the input MultiVector for several sparse
/// matrix-vector multiplies with matrices that have the same
/// column Map.
///
/// When <tt>Op(A)</tt> is \f$A\f$ (<tt>trans ==
/// Teuchos::NO_TRANS</tt>), then X's Map must be the same as the
/// column Map of this matrix, and Y's Map must be the same as the
/// row Map of this matrix. We say in this case that X is
/// "post-Imported," and Y is "pre-Exported." When <tt>Op(A)</tt>
/// is \f$A^T\f$ or \f$A^H\f$ (\c trans is <tt>Teuchos::TRANS</tt>
/// or <tt>Teuchos::CONJ_TRANS</tt>, then X's Map must be the same
/// as the row Map of this matrix, and Y's Map must be the same as
/// the column Map of this matrix.
///
/// Both X and Y must have constant stride, and they may not alias
/// one another (that is, occupy overlapping space in memory). We
/// may not necessarily check for aliasing, and if we do, we will
/// only do this in a debug build. Aliasing X and Y may cause
/// nondeterministically incorrect results.
///
/// This method is templated on the type of entries in both the
/// input MultiVector (\c DomainScalar) and the output MultiVector
/// (\c RangeScalar). Thus, this method works for MultiVector
/// objects of arbitrary type. However, this method only performs
/// computation local to each MPI process. Use
/// CrsMatrixMultiplyOp to handle global communication (the Import
/// and Export operations for the input resp. output MultiVector),
/// if you have a matrix with entries of a different type than the
/// input and output MultiVector objects.
///
/// If <tt>beta == 0</tt>, this operation will enjoy overwrite
/// semantics: Y will be overwritten with the result of the
/// multiplication, even if it contains <tt>NaN</tt>
/// (not-a-number) floating-point entries. Otherwise, the
/// multiply result will be accumulated into \c Y.
template <class DomainScalar, class RangeScalar>
void
localMultiply (const MultiVector<DomainScalar, LocalOrdinal, GlobalOrdinal, Node, classic>& X,
MultiVector<RangeScalar, LocalOrdinal, GlobalOrdinal, Node, classic>& Y,
Teuchos::ETransp mode,
RangeScalar alpha,
RangeScalar beta) const
{
using Teuchos::NO_TRANS;
// Just like Scalar and impl_scalar_type may differ in CrsMatrix,
// RangeScalar and its corresponding impl_scalar_type may differ in
// MultiVector.
typedef typename MultiVector<RangeScalar, LocalOrdinal, GlobalOrdinal,
Node, classic>::impl_scalar_type range_impl_scalar_type;
#ifdef HAVE_TPETRA_DEBUG
const char tfecfFuncName[] = "localMultiply: ";
#endif // HAVE_TPETRA_DEBUG
const range_impl_scalar_type theAlpha = static_cast<range_impl_scalar_type> (alpha);
const range_impl_scalar_type theBeta = static_cast<range_impl_scalar_type> (beta);
const bool conjugate = (mode == Teuchos::CONJ_TRANS);
const bool transpose = (mode != Teuchos::NO_TRANS);
auto X_lcl = X.template getLocalView<device_type> ();
auto Y_lcl = Y.template getLocalView<device_type> ();
#ifdef HAVE_TPETRA_DEBUG
TEUCHOS_TEST_FOR_EXCEPTION_CLASS_FUNC
(X.getNumVectors () != Y.getNumVectors (), std::runtime_error,
"X.getNumVectors() = " << X.getNumVectors () << " != Y.getNumVectors() = "
<< Y.getNumVectors () << ".");
TEUCHOS_TEST_FOR_EXCEPTION_CLASS_FUNC
(! transpose && X.getLocalLength () != getColMap ()->getNodeNumElements (),
std::runtime_error, "NO_TRANS case: X has the wrong number of local rows. "
"X.getLocalLength() = " << X.getLocalLength () << " != getColMap()->"
"getNodeNumElements() = " << getColMap ()->getNodeNumElements () << ".");
TEUCHOS_TEST_FOR_EXCEPTION_CLASS_FUNC
(! transpose && Y.getLocalLength () != getRowMap ()->getNodeNumElements (),
std::runtime_error, "NO_TRANS case: Y has the wrong number of local rows. "
"Y.getLocalLength() = " << Y.getLocalLength () << " != getRowMap()->"
"getNodeNumElements() = " << getRowMap ()->getNodeNumElements () << ".");
TEUCHOS_TEST_FOR_EXCEPTION_CLASS_FUNC
(transpose && X.getLocalLength () != getRowMap ()->getNodeNumElements (),
std::runtime_error, "TRANS or CONJ_TRANS case: X has the wrong number of "
"local rows. X.getLocalLength() = " << X.getLocalLength () << " != "
"getRowMap()->getNodeNumElements() = "
<< getRowMap ()->getNodeNumElements () << ".");
TEUCHOS_TEST_FOR_EXCEPTION_CLASS_FUNC
(transpose && Y.getLocalLength () != getColMap ()->getNodeNumElements (),
std::runtime_error, "TRANS or CONJ_TRANS case: X has the wrong number of "
"local rows. Y.getLocalLength() = " << Y.getLocalLength () << " != "
"getColMap()->getNodeNumElements() = "
<< getColMap ()->getNodeNumElements () << ".");
TEUCHOS_TEST_FOR_EXCEPTION_CLASS_FUNC
(! isFillComplete (), std::runtime_error, "The matrix is not fill "
"complete. You must call fillComplete() (possibly with domain and range "
"Map arguments) without an intervening resumeFill() call before you may "
"call this method.");
TEUCHOS_TEST_FOR_EXCEPTION_CLASS_FUNC
(! X.isConstantStride () || ! Y.isConstantStride (), std::runtime_error,
"X and Y must be constant stride.");
// If the two pointers are NULL, then they don't alias one
// another, even though they are equal.
TEUCHOS_TEST_FOR_EXCEPTION_CLASS_FUNC(
X_lcl.ptr_on_device () == Y_lcl.ptr_on_device () &&
X_lcl.ptr_on_device () != NULL,
std::runtime_error, "X and Y may not alias one another.");
#endif // HAVE_TPETRA_DEBUG
// Y = alpha*op(M) + beta*Y
if (transpose) {
KokkosSparse::spmv (conjugate ? KokkosSparse::ConjugateTranspose : KokkosSparse::Transpose,
theAlpha,
lclMatrix_,
X.template getLocalView<device_type> (),
theBeta,
Y.template getLocalView<device_type> ());
}
else {
KokkosSparse::spmv (KokkosSparse::NoTranspose,
theAlpha,
lclMatrix_,
X.template getLocalView<device_type> (),
theBeta,
Y.template getLocalView<device_type> ());
}
}
/// \brief Gauss-Seidel or SOR on \f$B = A X\f$.
///
/// Apply a forward or backward sweep of Gauss-Seidel or
/// Successive Over-Relaxation (SOR) to the linear system(s) \f$B
/// = A X\f$. For Gauss-Seidel, set the damping factor \c omega
/// to 1.
///
/// \tparam DomainScalar The type of entries in the input
/// multivector X. This may differ from the type of entries in
/// A or in B.
/// \tparam RangeScalar The type of entries in the output
/// multivector B. This may differ from the type of entries in
/// A or in X.
///
/// \param B [in] Right-hand side(s).
/// \param X [in/out] On input: initial guess(es). On output:
/// result multivector(s).
/// \param D [in] Inverse of diagonal entries of the matrix A.
/// \param omega [in] SOR damping factor. omega = 1 results in
/// Gauss-Seidel.
/// \param direction [in] Sweep direction: KokkosClassic::Forward or
/// KokkosClassic::Backward. ("Symmetric" requires interprocess
/// communication (before each sweep), which is not part of the
/// local kernel.)
template <class DomainScalar, class RangeScalar>
void
localGaussSeidel (const MultiVector<DomainScalar, LocalOrdinal, GlobalOrdinal, Node, classic> &B,
MultiVector<RangeScalar, LocalOrdinal, GlobalOrdinal, Node, classic> &X,
const MultiVector<Scalar, LocalOrdinal, GlobalOrdinal, Node, classic> &D,
const RangeScalar& dampingFactor,
const KokkosClassic::ESweepDirection direction) const
{
typedef LocalOrdinal LO;
typedef GlobalOrdinal GO;
typedef Tpetra::MultiVector<DomainScalar, LO, GO, Node, classic> DMV;
typedef Tpetra::MultiVector<RangeScalar, LO, GO, Node, classic> RMV;
typedef Tpetra::MultiVector<Scalar, LO, GO, Node, classic> MMV;
typedef typename DMV::dual_view_type::host_mirror_space HMDT ;
typedef typename Graph::local_graph_type k_local_graph_type;
typedef typename k_local_graph_type::size_type offset_type;
const char prefix[] = "Tpetra::CrsMatrix::localGaussSeidel: ";
TEUCHOS_TEST_FOR_EXCEPTION
(! this->isFillComplete (), std::runtime_error,
prefix << "The matrix is not fill complete.");
const size_t lclNumRows = this->getNodeNumRows ();
const size_t numVecs = B.getNumVectors ();
TEUCHOS_TEST_FOR_EXCEPTION
(X.getNumVectors () != numVecs, std::invalid_argument,
prefix << "B.getNumVectors() = " << numVecs << " != "
"X.getNumVectors() = " << X.getNumVectors () << ".");
TEUCHOS_TEST_FOR_EXCEPTION
(B.getLocalLength () != lclNumRows, std::invalid_argument,
prefix << "B.getLocalLength() = " << B.getLocalLength ()
<< " != this->getNodeNumRows() = " << lclNumRows << ".");
typename DMV::dual_view_type::t_host B_lcl = B.template getLocalView<HMDT> ();
typename RMV::dual_view_type::t_host X_lcl = X.template getLocalView<HMDT> ();
typename MMV::dual_view_type::t_host D_lcl = D.template getLocalView<HMDT> ();
offset_type B_stride[8], X_stride[8], D_stride[8];
B_lcl.stride (B_stride);
X_lcl.stride (X_stride);
D_lcl.stride (D_stride);
local_matrix_type lclMatrix = this->getLocalMatrix ();
k_local_graph_type lclGraph = lclMatrix.graph;
typename local_matrix_type::row_map_type ptr = lclGraph.row_map;
typename local_matrix_type::index_type ind = lclGraph.entries;
typename local_matrix_type::values_type val = lclMatrix.values;
const offset_type* const ptrRaw = ptr.ptr_on_device ();
const LO* const indRaw = ind.ptr_on_device ();
const impl_scalar_type* const valRaw = val.ptr_on_device ();
const std::string dir ((direction == KokkosClassic::Forward) ? "F" : "B");
KokkosSparse::Impl::Sequential::gaussSeidel (static_cast<LO> (lclNumRows),
static_cast<LO> (numVecs),
ptrRaw, indRaw, valRaw,
B_lcl.ptr_on_device (), B_stride[1],
X_lcl.ptr_on_device (), X_stride[1],
D_lcl.ptr_on_device (),
static_cast<impl_scalar_type> (dampingFactor),
dir.c_str ());
}
/// \brief Reordered Gauss-Seidel or SOR on \f$B = A X\f$.
///
/// Apply a forward or backward sweep of reordered Gauss-Seidel or
/// Successive Over-Relaxation (SOR) to the linear system(s) \f$B
/// = A X\f$. For Gauss-Seidel, set the damping factor \c omega
/// to 1. The ordering can be a partial one, in which case the Gauss-Seidel is only
/// executed on a local subset of unknowns.
///
/// \tparam DomainScalar The type of entries in the input
/// multivector X. This may differ from the type of entries in
/// A or in B.
/// \tparam RangeScalar The type of entries in the output
/// multivector B. This may differ from the type of entries in
/// A or in X.
///
/// \param B [in] Right-hand side(s).
/// \param X [in/out] On input: initial guess(es). On output:
/// result multivector(s).
/// \param D [in] Inverse of diagonal entries of the matrix A.
/// \param rowIndices [in] Ordered list of indices on which to execute GS.
/// \param omega [in] SOR damping factor. omega = 1 results in
/// Gauss-Seidel.
/// \param direction [in] Sweep direction: KokkosClassic::Forward or
/// KokkosClassic::Backward. ("Symmetric" requires interprocess
/// communication (before each sweep), which is not part of the
/// local kernel.)
template <class DomainScalar, class RangeScalar>
void
reorderedLocalGaussSeidel (const MultiVector<DomainScalar, LocalOrdinal, GlobalOrdinal, Node, classic>& B,
MultiVector<RangeScalar, LocalOrdinal, GlobalOrdinal, Node, classic>& X,
const MultiVector<Scalar, LocalOrdinal, GlobalOrdinal, Node, classic>& D,
const Teuchos::ArrayView<LocalOrdinal>& rowIndices,
const RangeScalar& dampingFactor,
const KokkosClassic::ESweepDirection direction) const
{
typedef LocalOrdinal LO;
typedef GlobalOrdinal GO;
typedef Tpetra::MultiVector<DomainScalar, LO, GO, Node, classic> DMV;
typedef Tpetra::MultiVector<RangeScalar, LO, GO, Node, classic> RMV;
typedef Tpetra::MultiVector<Scalar, LO, GO, Node, classic> MMV;
typedef typename DMV::dual_view_type::host_mirror_space HMDT ;
typedef typename Graph::local_graph_type k_local_graph_type;
typedef typename k_local_graph_type::size_type offset_type;
const char prefix[] = "Tpetra::CrsMatrix::reorderedLocalGaussSeidel: ";
TEUCHOS_TEST_FOR_EXCEPTION
(! this->isFillComplete (), std::runtime_error,
prefix << "The matrix is not fill complete.");
const size_t lclNumRows = this->getNodeNumRows ();
const size_t numVecs = B.getNumVectors ();
TEUCHOS_TEST_FOR_EXCEPTION
(X.getNumVectors () != numVecs, std::invalid_argument,
prefix << "B.getNumVectors() = " << numVecs << " != "
"X.getNumVectors() = " << X.getNumVectors () << ".");
TEUCHOS_TEST_FOR_EXCEPTION
(B.getLocalLength () != lclNumRows, std::invalid_argument,
prefix << "B.getLocalLength() = " << B.getLocalLength ()
<< " != this->getNodeNumRows() = " << lclNumRows << ".");
TEUCHOS_TEST_FOR_EXCEPTION
(static_cast<size_t> (rowIndices.size ()) < lclNumRows,
std::invalid_argument, prefix << "rowIndices.size() = "
<< rowIndices.size () << " < this->getNodeNumRows() = "
<< lclNumRows << ".");
typename DMV::dual_view_type::t_host B_lcl = B.template getLocalView<HMDT> ();
typename RMV::dual_view_type::t_host X_lcl = X.template getLocalView<HMDT> ();
typename MMV::dual_view_type::t_host D_lcl = D.template getLocalView<HMDT> ();
offset_type B_stride[8], X_stride[8], D_stride[8];
B_lcl.stride (B_stride);
X_lcl.stride (X_stride);
D_lcl.stride (D_stride);
local_matrix_type lclMatrix = this->getLocalMatrix ();
typename Graph::local_graph_type lclGraph = lclMatrix.graph;
typename local_matrix_type::index_type ind = lclGraph.entries;
typename local_matrix_type::row_map_type ptr = lclGraph.row_map;
typename local_matrix_type::values_type val = lclMatrix.values;
const offset_type* const ptrRaw = ptr.ptr_on_device ();
const LO* const indRaw = ind.ptr_on_device ();
const impl_scalar_type* const valRaw = val.ptr_on_device ();
const std::string dir = (direction == KokkosClassic::Forward) ? "F" : "B";
KokkosSparse::Impl::Sequential::reorderedGaussSeidel (static_cast<LO> (lclNumRows),
static_cast<LO> (numVecs),
ptrRaw, indRaw, valRaw,
B_lcl.ptr_on_device (),
B_stride[1],
X_lcl.ptr_on_device (),
X_stride[1],
D_lcl.ptr_on_device (),
rowIndices.getRawPtr (),
static_cast<LO> (lclNumRows),
static_cast<impl_scalar_type> (dampingFactor),
dir.c_str ());
}
/// \brief Solves a linear system when the underlying matrix is
/// locally triangular.
///
/// X is required to be post-imported, i.e., described by the
/// column map of the matrix. Y is required to be pre-exported,
/// i.e., described by the row map of the matrix.
///
/// This method is templated on the scalar type of MultiVector
/// objects, allowing this method to be applied to MultiVector
/// objects of arbitrary type. However, if you intend to use this
/// with template parameters not equal to Scalar, we recommend
/// that you wrap this matrix in a CrsMatrixSolveOp. That class
/// will handle the Import/Export operations required to apply a
/// matrix with non-trivial communication needs.
///
/// Both X and Y are required to have constant stride. However,
/// unlike multiply(), it is permissible for <tt>&X == &Y</tt>. No
/// run-time checking will be performed in a non-debug build.
template <class DomainScalar, class RangeScalar>
void
localSolve (const MultiVector<RangeScalar, LocalOrdinal, GlobalOrdinal, Node, classic>& Y,
MultiVector<DomainScalar, LocalOrdinal, GlobalOrdinal, Node, classic>& X,
Teuchos::ETransp mode) const
{
using Teuchos::CONJ_TRANS;
using Teuchos::NO_TRANS;
using Teuchos::TRANS;
const char tfecfFuncName[] = "localSolve: ";
TEUCHOS_TEST_FOR_EXCEPTION_CLASS_FUNC
(! isFillComplete (), std::runtime_error,
"The matrix is not fill complete.");
TEUCHOS_TEST_FOR_EXCEPTION_CLASS_FUNC
(! X.isConstantStride () || ! Y.isConstantStride (), std::invalid_argument,
"X and Y must be constant stride.");
TEUCHOS_TEST_FOR_EXCEPTION_CLASS_FUNC
( getNodeNumRows()>0 && ! isUpperTriangular () && ! isLowerTriangular (), std::runtime_error,
"The matrix is neither upper triangular or lower triangular. "
"You may only call this method if the matrix is triangular. "
"Remember that this is a local (per MPI process) property, and that "
"Tpetra only knows how to do a local (per process) triangular solve.");
TEUCHOS_TEST_FOR_EXCEPTION_CLASS_FUNC
(STS::isComplex && mode == TRANS, std::logic_error, "This method does "
"not currently support non-conjugated transposed solve (mode == "
"Teuchos::TRANS) for complex scalar types.");
// FIXME (mfh 19 May 2016) This makes some Ifpack2 tests fail.
//
// TEUCHOS_TEST_FOR_EXCEPTION_CLASS_FUNC
// (Y.template need_sync<device_type> () && !
// Y.template need_sync<Kokkos::HostSpace> (), std::runtime_error,
// "Y must be sync'd to device memory before you may call this method.");
// FIXME (mfh 27 Aug 2014) Tpetra has always made the odd decision
// that if _some_ diagonal entries are missing locally, then it
// assumes that the matrix has an implicitly stored unit diagonal.
// Whether the matrix has an implicit unit diagonal or not should
// be up to the user to decide. What if the graph has no diagonal
// entries, and the user wants it that way? The only reason this
// matters, though, is for the triangular solve, and in that case,
// missing diagonal entries will cause trouble anyway. However,
// it would make sense to warn the user if they ask for a
// triangular solve with an incomplete diagonal. Furthermore,
// this code should only assume an implicitly stored unit diagonal
// if the matrix has _no_ explicitly stored diagonal entries.
const std::string uplo = isUpperTriangular () ? "U" :
(isLowerTriangular () ? "L" : "N");
const std::string trans = (mode == Teuchos::CONJ_TRANS) ? "C" :
(mode == Teuchos::TRANS ? "T" : "N");
const std::string diag =
(getNodeNumDiags () < getNodeNumRows ()) ? "U" : "N";
local_matrix_type A_lcl = this->getLocalMatrix ();
X.template modify<device_type> (); // we will write to X
if (X.isConstantStride () && Y.isConstantStride ()) {
auto X_lcl = X.template getLocalView<device_type> ();
auto Y_lcl = Y.template getLocalView<device_type> ();
KokkosSparse::trsv (uplo.c_str (), trans.c_str (), diag.c_str (),
A_lcl, Y_lcl, X_lcl);
}
else {
const size_t numVecs = std::min (X.getNumVectors (), Y.getNumVectors ());
for (size_t j = 0; j < numVecs; ++j) {
auto X_j = X.getVector (j);
auto Y_j = X.getVector (j);
auto X_lcl = X_j->template getLocalView<device_type> ();
auto Y_lcl = Y_j->template getLocalView<device_type> ();
KokkosSparse::trsv (uplo.c_str (), trans.c_str (),
diag.c_str (), A_lcl, Y_lcl, X_lcl);
}
}
}
/// \brief Return another CrsMatrix with the same entries, but
/// converted to a different Scalar type \c T.
template <class T>
Teuchos::RCP<CrsMatrix<T, LocalOrdinal, GlobalOrdinal, Node, classic> >
convert () const;
//@}
//! @name Methods implementing Operator
//@{
/// \brief Compute a sparse matrix-MultiVector multiply.
///
/// This method computes <tt>Y := beta*Y + alpha*Op(A)*X</tt>,
/// where <tt>Op(A)</tt> is either \f$A\f$, \f$A^T\f$ (the
/// transpose), or \f$A^H\f$ (the conjugate transpose).
///
/// If <tt>beta == 0</tt>, this operation will enjoy overwrite
/// semantics: Y's entries will be ignored, and Y will be
/// overwritten with the result of the multiplication, even if it
/// contains <tt>NaN</tt> (not-a-number) floating-point entries.
void
apply (const MultiVector<Scalar, LocalOrdinal, GlobalOrdinal, Node, classic>& X,
MultiVector<Scalar, LocalOrdinal, GlobalOrdinal, Node, classic>&Y,
Teuchos::ETransp mode = Teuchos::NO_TRANS,
Scalar alpha = Teuchos::ScalarTraits<Scalar>::one(),
Scalar beta = Teuchos::ScalarTraits<Scalar>::zero()) const;
//! Whether apply() allows applying the transpose or conjugate transpose.
bool hasTransposeApply () const;
/// \brief The domain Map of this matrix.
///
/// This method implements Tpetra::Operator. If fillComplete()
/// has not yet been called at least once on this matrix, or if
/// the matrix was not constructed with a domain Map, then this
/// method returns Teuchos::null.
Teuchos::RCP<const map_type> getDomainMap () const;
/// \brief The range Map of this matrix.
///
/// This method implements Tpetra::Operator. If fillComplete()
/// has not yet been called at least once on this matrix, or if
/// the matrix was not constructed with a domain Map, then this
/// method returns Teuchos::null.
Teuchos::RCP<const map_type> getRangeMap () const;
//@}
//! @name Other "apply"-like methods
//@{
/// \brief "Hybrid" Jacobi + (Gauss-Seidel or SOR) on \f$B = A X\f$.
///
/// "Hybrid" means Successive Over-Relaxation (SOR) or
/// Gauss-Seidel within an (MPI) process, but Jacobi between
/// processes. Gauss-Seidel is a special case of SOR, where the
/// damping factor is one.
///
/// The Forward or Backward sweep directions have their usual SOR
/// meaning within the process. Interprocess communication occurs
/// once before the sweep, as it normally would in Jacobi.
///
/// The Symmetric sweep option means two sweeps: first Forward,
/// then Backward. Interprocess communication occurs before each
/// sweep, as in Jacobi. Thus, Symmetric results in two
/// interprocess communication steps.
///
/// \param B [in] Right-hand side(s).
/// \param X [in/out] On input: initial guess(es). On output:
/// result multivector(s).
/// \param D [in] Inverse of diagonal entries of the matrix A.
/// \param dampingFactor [in] SOR damping factor. A damping
/// factor of one results in Gauss-Seidel.
/// \param direction [in] Sweep direction: Forward, Backward, or
/// Symmetric.
/// \param numSweeps [in] Number of sweeps. We count each
/// Symmetric sweep (including both its Forward and its Backward
/// sweep) as one.
///
/// \section Tpetra_KR_CrsMatrix_gaussSeidel_req Requirements
///
/// This method has the following requirements:
///
/// 1. X is in the domain Map of the matrix.
/// 2. The domain and row Maps of the matrix are the same.
/// 3. The column Map contains the domain Map, and both start at the same place.
/// 4. The row Map is uniquely owned.
/// 5. D is in the row Map of the matrix.
/// 6. X is actually a view of a column Map multivector.
/// 7. Neither B nor D alias X.
///
/// #1 is just the usual requirement for operators: the input
/// multivector must always be in the domain Map. The
/// Gauss-Seidel kernel imposes additional requirements, since it
///
/// - overwrites the input multivector with the output (which
/// implies #2), and
/// - uses the same local indices for the input and output
/// multivector (which implies #2 and #3).
///
/// #3 is reasonable if the matrix constructed the column Map,
/// because the method that does this (CrsGraph::makeColMap) puts
/// the local GIDs (those in the domain Map) in front and the
/// remote GIDs (not in the domain Map) at the end of the column
/// Map. However, if you constructed the column Map yourself, you
/// are responsible for maintaining this invariant. #6 lets us do
/// the Import from the domain Map to the column Map in place.
///
/// The Gauss-Seidel kernel also assumes that each process has the
/// entire value (not a partial value to sum) of all the diagonal
/// elements in the rows in its row Map. (We guarantee this anyway
/// though the separate D vector.) This is because each element of
/// the output multivector depends nonlinearly on the diagonal
/// elements. Shared ownership of off-diagonal elements would
/// produce different results.
void
gaussSeidel (const MultiVector<Scalar, LocalOrdinal, GlobalOrdinal, Node, classic> &B,
MultiVector<Scalar, LocalOrdinal, GlobalOrdinal, Node, classic> &X,
const MultiVector<Scalar, LocalOrdinal, GlobalOrdinal, Node, classic> &D,
const Scalar& dampingFactor,
const ESweepDirection direction,
const int numSweeps) const;
/// \brief Reordered "Hybrid" Jacobi + (Gauss-Seidel or SOR) on \f$B = A X\f$.
///
/// "Hybrid" means Successive Over-Relaxation (SOR) or
/// Gauss-Seidel within an (MPI) process, but Jacobi between
/// processes. Gauss-Seidel is a special case of SOR, where the
/// damping factor is one. The ordering can be a partial one, in which case the Gauss-Seidel is only
/// executed on a local subset of unknowns.
///
/// The Forward or Backward sweep directions have their usual SOR
/// meaning within the process. Interprocess communication occurs
/// once before the sweep, as it normally would in Jacobi.
///
/// The Symmetric sweep option means two sweeps: first Forward,
/// then Backward. Interprocess communication occurs before each
/// sweep, as in Jacobi. Thus, Symmetric results in two
/// interprocess communication steps.
///
/// \param B [in] Right-hand side(s).
/// \param X [in/out] On input: initial guess(es). On output:
/// result multivector(s).
/// \param D [in] Inverse of diagonal entries of the matrix A.
/// \param rowIndices [in] Ordered list of indices on which to execute GS.
/// \param dampingFactor [in] SOR damping factor. A damping
/// factor of one results in Gauss-Seidel.
/// \param direction [in] Sweep direction: Forward, Backward, or
/// Symmetric.
/// \param numSweeps [in] Number of sweeps. We count each
/// Symmetric sweep (including both its Forward and its Backward
/// sweep) as one.
///
/// \section Tpetra_KR_CrsMatrix_reorderedGaussSeidel_req Requirements
///
/// This method has the following requirements:
///
/// 1. X is in the domain Map of the matrix.
/// 2. The domain and row Maps of the matrix are the same.
/// 3. The column Map contains the domain Map, and both start at the same place.
/// 4. The row Map is uniquely owned.
/// 5. D is in the row Map of the matrix.
/// 6. X is actually a view of a column Map multivector.
/// 7. Neither B nor D alias X.
///
/// #1 is just the usual requirement for operators: the input
/// multivector must always be in the domain Map. The
/// Gauss-Seidel kernel imposes additional requirements, since it
///
/// - overwrites the input multivector with the output (which
/// implies #2), and
/// - uses the same local indices for the input and output
/// multivector (which implies #2 and #3).
///
/// #3 is reasonable if the matrix constructed the column Map,
/// because the method that does this (CrsGraph::makeColMap) puts
/// the local GIDs (those in the domain Map) in front and the
/// remote GIDs (not in the domain Map) at the end of the column
/// Map. However, if you constructed the column Map yourself, you
/// are responsible for maintaining this invariant. #6 lets us do
/// the Import from the domain Map to the column Map in place.
///
/// The Gauss-Seidel kernel also assumes that each process has the
/// entire value (not a partial value to sum) of all the diagonal
/// elements in the rows in its row Map. (We guarantee this anyway
/// though the separate D vector.) This is because each element of
/// the output multivector depends nonlinearly on the diagonal
/// elements. Shared ownership of off-diagonal elements would
/// produce different results.
void
reorderedGaussSeidel (const MultiVector<Scalar, LocalOrdinal, GlobalOrdinal, Node, classic>& B,
MultiVector<Scalar, LocalOrdinal, GlobalOrdinal, Node, classic>& X,
const MultiVector<Scalar, LocalOrdinal, GlobalOrdinal, Node, classic>& D,
const Teuchos::ArrayView<LocalOrdinal>& rowIndices,
const Scalar& dampingFactor,
const ESweepDirection direction,
const int numSweeps) const;
/// \brief Version of gaussSeidel(), with fewer requirements on X.
///
/// This method is just like gaussSeidel(), except that X need
/// only be in the domain Map. This method does not require that
/// X be a domain Map view of a column Map multivector. As a
/// result, this method must copy X into a domain Map multivector
/// before operating on it.
///
/// \param X [in/out] On input: initial guess(es). On output:
/// result multivector(s).
/// \param B [in] Right-hand side(s), in the range Map.
/// \param D [in] Inverse of diagonal entries of the matrix,
/// in the row Map.
/// \param dampingFactor [in] SOR damping factor. A damping
/// factor of one results in Gauss-Seidel.
/// \param direction [in] Sweep direction: Forward, Backward, or
/// Symmetric.
/// \param numSweeps [in] Number of sweeps. We count each
/// Symmetric sweep (including both its Forward and its
/// Backward sweep) as one.
/// \param zeroInitialGuess [in] If true, this method will fill X
/// with zeros initially. If false, this method will assume
/// that X contains a possibly nonzero initial guess on input.
/// Note that a nonzero initial guess may impose an additional
/// nontrivial communication cost (an additional Import).
///
/// \pre Domain, range, and row Maps of the sparse matrix are all the same.
/// \pre No other argument aliases X.
void
gaussSeidelCopy (MultiVector<Scalar, LocalOrdinal, GlobalOrdinal, Node, classic> &X,
const MultiVector<Scalar, LocalOrdinal, GlobalOrdinal, Node, classic> &B,
const MultiVector<Scalar, LocalOrdinal, GlobalOrdinal, Node, classic> &D,
const Scalar& dampingFactor,
const ESweepDirection direction,
const int numSweeps,
const bool zeroInitialGuess) const;
/// \brief Version of reorderedGaussSeidel(), with fewer requirements on X.
///
/// This method is just like reorderedGaussSeidel(), except that X need
/// only be in the domain Map. This method does not require that
/// X be a domain Map view of a column Map multivector. As a
/// result, this method must copy X into a domain Map multivector
/// before operating on it.
///
/// \param X [in/out] On input: initial guess(es). On output:
/// result multivector(s).
/// \param B [in] Right-hand side(s), in the range Map.
/// \param D [in] Inverse of diagonal entries of the matrix,
/// in the row Map.
/// \param rowIndices [in] Ordered list of indices on which to execute GS.
/// \param dampingFactor [in] SOR damping factor. A damping
/// factor of one results in Gauss-Seidel.
/// \param direction [in] Sweep direction: Forward, Backward, or
/// Symmetric.
/// \param numSweeps [in] Number of sweeps. We count each
/// Symmetric sweep (including both its Forward and its
/// Backward sweep) as one.
/// \param zeroInitialGuess [in] If true, this method will fill X
/// with zeros initially. If false, this method will assume
/// that X contains a possibly nonzero initial guess on input.
/// Note that a nonzero initial guess may impose an additional
/// nontrivial communication cost (an additional Import).
///
/// \pre Domain, range, and row Maps of the sparse matrix are all the same.
/// \pre No other argument aliases X.
void
reorderedGaussSeidelCopy (MultiVector<Scalar, LocalOrdinal, GlobalOrdinal, Node, classic>& X,
const MultiVector<Scalar, LocalOrdinal, GlobalOrdinal, Node, classic>& B,
const MultiVector<Scalar, LocalOrdinal, GlobalOrdinal, Node, classic>& D,
const Teuchos::ArrayView<LocalOrdinal>& rowIndices,
const Scalar& dampingFactor,
const ESweepDirection direction,
const int numSweeps,
const bool zeroInitialGuess) const;
/// \brief Implementation of RowMatrix::add: return <tt>alpha*A + beta*this</tt>.
///
/// This override of the default implementation ensures that, when
/// called on a CrsMatrix, this method always returns a CrsMatrix
/// of exactly the same type as <tt>*this</tt>. "Exactly the same
/// type" means that all the template parameters match, including
/// the fifth template parameter. The input matrix A need not
/// necessarily be a CrsMatrix or a CrsMatrix of the same type as
/// <tt>*this</tt>, though this method may be able to optimize
/// further in that case.
virtual Teuchos::RCP<RowMatrix<Scalar, LocalOrdinal, GlobalOrdinal, Node> >
add (const Scalar& alpha,
const RowMatrix<Scalar, LocalOrdinal, GlobalOrdinal, Node>& A,
const Scalar& beta,
const Teuchos::RCP<const Map<LocalOrdinal, GlobalOrdinal, Node> >& domainMap,
const Teuchos::RCP<const Map<LocalOrdinal, GlobalOrdinal, Node> >& rangeMap,
const Teuchos::RCP<Teuchos::ParameterList>& params) const;
//@}
//! @name Implementation of Teuchos::Describable interface
//@{
//! A one-line description of this object.
std::string description () const;
//! Print the object with some verbosity level to an FancyOStream object.
void
describe (Teuchos::FancyOStream &out,
const Teuchos::EVerbosityLevel verbLevel =
Teuchos::Describable::verbLevel_default) const;
//@}
//! @name Implementation of DistObject interface
//@{
virtual bool
checkSizes (const SrcDistObject& source);
virtual void
copyAndPermute (const SrcDistObject& source,
size_t numSameIDs,
const Teuchos::ArrayView<const LocalOrdinal>& permuteToLIDs,
const Teuchos::ArrayView<const LocalOrdinal>& permuteFromLIDs);
virtual void
packAndPrepare (const SrcDistObject& source,
const Teuchos::ArrayView<const LocalOrdinal>& exportLIDs,
Teuchos::Array<char>& exports,
const Teuchos::ArrayView<size_t>& numPacketsPerLID,
size_t& constantNumPackets,
Distributor& distor);
private:
/// \brief Unpack the imported column indices and values, and
/// combine into matrix.
void
unpackAndCombineImpl (const Teuchos::ArrayView<const LocalOrdinal>& importLIDs,
const Teuchos::ArrayView<const char>& imports,
const Teuchos::ArrayView<const size_t>& numPacketsPerLID,
size_t constantNumPackets,
Distributor& distor,
CombineMode combineMode);
public:
/// \brief Unpack the imported column indices and values, and combine into matrix.
///
/// \warning The allowed \c combineMode depends on whether the
/// matrix's graph is static or dynamic. ADD, REPLACE, and
/// ABSMAX are valid for a static graph, but INSERT is not.
/// ADD and INSERT are valid for a dynamic graph; ABSMAX and
/// REPLACE have not yet been implemented (and would require
/// serious changes to matrix assembly in order to implement
/// sensibly).
void
unpackAndCombine (const Teuchos::ArrayView<const LocalOrdinal> &importLIDs,
const Teuchos::ArrayView<const char> &imports,
const Teuchos::ArrayView<size_t> &numPacketsPerLID,
size_t constantNumPackets,
Distributor& distor,
CombineMode combineMode);
//@}
//! @name Implementation of Packable interface
//@{
/// \brief Pack this object's data for an Import or Export.
///
/// \warning To be called only by the packAndPrepare method of
/// appropriate classes of DistObject.
///
/// \param exportLIDs [in] Local indices of the rows to pack.
/// \param exports [out] On output: array of packed matrix
/// entries; allocated by method.
/// \param numPacketsPerLID [out] On output: numPacketsPerLID[i]
/// is the number of bytes of the \c exports array used for
/// storing packed local row \c exportLIDs[i].
/// \param constantNumPackets [out] If zero on output, the packed
/// rows may have different numbers of entries. If nonzero on
/// output, then that number gives the constant number of
/// entries for all packed rows <i>on all processes in the
/// matrix's communicator</i>.
/// \param distor [in/out] The Distributor object which implements
/// the Import or Export operation that is calling this method.
///
/// \subsection Tpetra_KR_CrsMatrix_pack_summary Packing scheme
///
/// The number of "packets" per row is the number of bytes per
/// row. Each row has the following storage format:
///
/// <tt>[numEnt, vals, inds]</tt>,
///
/// where:
/// <ul>
/// <li> \c numEnt (\c LocalOrdinal): number of entries in the
/// row. </li>
/// <li> \c vals: array of \c Scalar. For the k-th entry in the
/// row, \c vals[k] is its value and \c inds[k] its global
/// column index. </li>
/// <li> \c inds: array of \c GlobalOrdinal. For the k-th entry
/// in the row, \c vals[k] is its value and \c inds[k] its
/// global column index. </li>
/// </ul>
///
/// We reserve the right to pad for alignment in the future. In
/// that case, the number of bytes reported by \c numPacketsPerLID
/// will reflect padding to align each datum to its size, and the
/// row will have final padding as well to ensure that the
/// <i>next</i> row is aligned. Rows with zero entries will still
/// take zero bytes, however.
///
/// RowMatrix::pack will always use the same packing scheme as
/// this method. This ensures correct Import / Export from a
/// RowMatrix to a CrsMatrix.
///
/// We do <i>not</i> recommend relying on the details of this
/// packing scheme. We describe it here more for Tpetra
/// developers and less for users.
///
/// \subsection Tpetra_KR_CrsMatrix_pack_disc Discussion
///
/// DistObject requires packing an object's entries as type
/// <tt>Packet</tt>, which is the first template parameter of
/// DistObject. Since sparse matrices have both values and
/// indices, we use <tt>Packet=char</tt> and pack them into
/// buffers of <tt>char</tt> (really "byte"). Indices are stored
/// as global indices, in case the source and target matrices have
/// different column Maps (or don't have a column Map yet).
///
/// Currently, we only pack values and column indices. Row
/// indices are stored implicitly as the local indices (LIDs) to
/// pack (see \c exportLIDs). This is because a DistObject
/// instance only has one Map, and currently we use the row Map
/// for CrsMatrix (and RowMatrix). This makes redistribution of
/// matrices with 2-D distributions less efficient, but it works
/// for now. This may change in the future.
///
/// On output, \c numPacketsPerLID[i] gives the number of bytes
/// used to pack local row \c exportLIDs[i] of \c this object (the
/// source object of an Import or Export). If \c offset is the
/// exclusive prefix sum-scan of \c numPacketsPerLID, then on
/// output, <tt>exports[offset[i] .. offset[i+1]]</tt>
/// (half-exclusive range) contains the packed entries for local
/// row \c exportLIDs[i].
///
/// Entries for each row use a "struct of arrays" pattern to match
/// how sparse matrices actually store their data. The number of
/// entries in the row goes first, all values go next, and all
/// column indices (stored as global indices) go last. Values and
/// column indices occur in the same order. Rows with zero
/// entries always take zero bytes (we do not store their number
/// of entries explicitly). This ensures sparsity of storage and
/// communication in case most rows are empty.
///
/// \subsection Tpetra_KR_CrsMatrix_pack_why Justification
///
/// GCC >= 4.9 and recent-future versions of the Intel compiler
/// implement stricter aliasing rules that forbid unaligned type
/// punning. If we were to pack as an "array of structs" -- in
/// this case, an array of <tt>(Scalar, GlobalOrdinal)</tt> pairs
/// -- then we would either have to pad each matrix entry for
/// alignment, or call memcpy twice per matrix entry to pack and
/// unpack. The "struct of arrays" storage scheme reduces the
/// padding requirement to a constant per row, or reduces the
/// number of memcpy calls to two per row.
///
/// We include the number of entries in each row in that row's
/// packed data, to make unpacking easier. This saves us from an
/// error-prone computation to find the number of entries from the
/// number of bytes. That computation gets even more difficult if
/// we have to introduce padding for alignment in the future.
/// Knowing the number of entries for each row also makes
/// parallelizing packing and unpacking easier.
///
/// \subsection Tpetra_KR_CrsMatrix_pack_assum Technical assumptions
///
/// <ul>
/// <li> \c sizeof(Scalar) says how much data were used to
/// represent a \c Scalar in its packed form. </li>
/// <li> \c sizeof returns the same value on all processes for
/// <tt>Scalar</tt>, \c LocalOrdinal, and \c GlobalOrdinal.
/// </li>
/// </ul>
virtual void
pack (const Teuchos::ArrayView<const LocalOrdinal>& exportLIDs,
Teuchos::Array<char>& exports,
const Teuchos::ArrayView<size_t>& numPacketsPerLID,
size_t& constantNumPackets,
Distributor& distor) const;
private:
/// \brief Pack data for the current row to send.
///
/// \param numEntOut [out] Where to write the number of entries in
/// the row.
/// \param valOut [out] Output (packed) array of matrix values.
/// \param indOut [out] Output (packed) array of matrix column
/// indices (as global indices).
/// \param numEnt [in] Number of entries in the row.
/// \param lclRow [in] Local index of the row.
///
/// This method does not allocate temporary storage. We intend
/// for this to be safe to call in a thread-parallel way at some
/// point, though it is currently not, due to thread safety issues
/// with Teuchos::RCP (always) and Teuchos::ArrayView (in a debug
/// build).
///
/// \return \c true if the method succeeded, else \c false.
bool
packRow (char* const numEntOut,
char* const valOut,
char* const indOut,
const size_t numEnt,
const LocalOrdinal lclRow) const;
/// \brief Unpack and combine received data for the current row.
///
/// \pre <tt>tmpSize >= numEnt</tt>
///
/// \param valInTmp [out] Temporary storage for values. Has
/// tmpSize entries.
/// \param indInTmp [out] Temporary storage for indices. Has
/// tmpSize entries.
/// \param tmpNumEnt [in] Number of entries (not bytes!) in each
/// of valInTmp and indInTmp.
/// \param valIn [in] Pointer to where values live in receive
/// buffer. Not necessarily aligned to sizeof(Scalar) (so must
/// memcpy into temporary storage).
/// \param indIn [out] Pointer to where indices live in receive
/// buffer. Not necessarily aligned to sizeof(GlobalOrdinal)
/// (so must memcpy into temporary storage).
/// \param numEnt [in] Number of entries in the row.
/// \param lclRow [in] Local index of the row.
/// \param combineMode [in] Combine mode (how to merge entries in
/// the same row with the same column index).
///
/// \return \c true if the method succeeded, else \c false.
bool
unpackRow (Scalar* const valInTmp,
GlobalOrdinal* const indInTmp,
const size_t tmpNumEnt,
const char* const valIn,
const char* const indIn,
const size_t numEnt,
const LocalOrdinal lclRow,
const Tpetra::CombineMode combineMode);
/// \brief Allocate space for pack() to pack entries to send.
///
/// \param exports [in/out] Pack buffer to (re)allocate.
/// \param totalNumEntries [out] Total number of entries to send.
/// \param exportLIDs [in] Local indices of the rows to send.
void
allocatePackSpace (Teuchos::Array<char>& exports,
size_t& totalNumEntries,
const Teuchos::ArrayView<const LocalOrdinal>& exportLIDs) const;
//@}
public:
//! Get the Kokkos local values
typename local_matrix_type::values_type getLocalValuesView () const {
return k_values1D_;
}
private:
// Friend declaration for nonmember function.
template<class CrsMatrixType>
friend Teuchos::RCP<CrsMatrixType>
importAndFillCompleteCrsMatrix (const Teuchos::RCP<const CrsMatrixType>& sourceMatrix,
const Import<typename CrsMatrixType::local_ordinal_type,
typename CrsMatrixType::global_ordinal_type,
typename CrsMatrixType::node_type>& importer,
const Teuchos::RCP<const Map<typename CrsMatrixType::local_ordinal_type,
typename CrsMatrixType::global_ordinal_type,
typename CrsMatrixType::node_type> >& domainMap,
const Teuchos::RCP<const Map<typename CrsMatrixType::local_ordinal_type,
typename CrsMatrixType::global_ordinal_type,
typename CrsMatrixType::node_type> >& rangeMap,
const Teuchos::RCP<Teuchos::ParameterList>& params);
// Friend declaration for nonmember function.
template<class CrsMatrixType>
friend Teuchos::RCP<CrsMatrixType>
importAndFillCompleteCrsMatrix (const Teuchos::RCP<const CrsMatrixType>& sourceMatrix,
const Import<typename CrsMatrixType::local_ordinal_type,
typename CrsMatrixType::global_ordinal_type,
typename CrsMatrixType::node_type>& rowImporter,
const Import<typename CrsMatrixType::local_ordinal_type,
typename CrsMatrixType::global_ordinal_type,
typename CrsMatrixType::node_type>& domainImporter,
const Teuchos::RCP<const Map<typename CrsMatrixType::local_ordinal_type,
typename CrsMatrixType::global_ordinal_type,
typename CrsMatrixType::node_type> >& domainMap,
const Teuchos::RCP<const Map<typename CrsMatrixType::local_ordinal_type,
typename CrsMatrixType::global_ordinal_type,
typename CrsMatrixType::node_type> >& rangeMap,
const Teuchos::RCP<Teuchos::ParameterList>& params);
// Friend declaration for nonmember function.
template<class CrsMatrixType>
friend Teuchos::RCP<CrsMatrixType>
exportAndFillCompleteCrsMatrix (const Teuchos::RCP<const CrsMatrixType>& sourceMatrix,
const Export<typename CrsMatrixType::local_ordinal_type,
typename CrsMatrixType::global_ordinal_type,
typename CrsMatrixType::node_type>& exporter,
const Teuchos::RCP<const Map<typename CrsMatrixType::local_ordinal_type,
typename CrsMatrixType::global_ordinal_type,
typename CrsMatrixType::node_type> >& domainMap,
const Teuchos::RCP<const Map<typename CrsMatrixType::local_ordinal_type,
typename CrsMatrixType::global_ordinal_type,
typename CrsMatrixType::node_type> >& rangeMap,
const Teuchos::RCP<Teuchos::ParameterList>& params);
// Friend declaration for nonmember function.
template<class CrsMatrixType>
friend Teuchos::RCP<CrsMatrixType>
exportAndFillCompleteCrsMatrix (const Teuchos::RCP<const CrsMatrixType>& sourceMatrix,
const Export<typename CrsMatrixType::local_ordinal_type,
typename CrsMatrixType::global_ordinal_type,
typename CrsMatrixType::node_type>& rowExporter,
const Export<typename CrsMatrixType::local_ordinal_type,
typename CrsMatrixType::global_ordinal_type,
typename CrsMatrixType::node_type>& domainExporter,
const Teuchos::RCP<const Map<typename CrsMatrixType::local_ordinal_type,
typename CrsMatrixType::global_ordinal_type,
typename CrsMatrixType::node_type> >& domainMap,
const Teuchos::RCP<const Map<typename CrsMatrixType::local_ordinal_type,
typename CrsMatrixType::global_ordinal_type,
typename CrsMatrixType::node_type> >& rangeMap,
const Teuchos::RCP<Teuchos::ParameterList>& params);
public:
/// \brief Import from <tt>this</tt> to the given destination
/// matrix, and make the result fill complete.
///
/// If destMatrix.is_null(), this creates a new matrix as the
/// destination. (This is why destMatrix is passed in by nonconst
/// reference to RCP.) Otherwise it checks for "pristine" status
/// and throws if that is not the case. "Pristine" means that the
/// matrix has no entries and is not fill complete.
///
/// Use of the "non-member constructor" version of this method,
/// exportAndFillCompleteCrsMatrix, is preferred for user
/// applications.
///
/// \warning This method is intended for expert developer use
/// only, and should never be called by user code.
void
importAndFillComplete (Teuchos::RCP<CrsMatrix<Scalar, LocalOrdinal, GlobalOrdinal, Node, classic> >& destMatrix,
const import_type& importer,
const Teuchos::RCP<const map_type>& domainMap,
const Teuchos::RCP<const map_type>& rangeMap,
const Teuchos::RCP<Teuchos::ParameterList>& params = Teuchos::null) const;
/// \brief Import from <tt>this</tt> to the given destination
/// matrix, and make the result fill complete.
///
/// If destMatrix.is_null(), this creates a new matrix as the
/// destination. (This is why destMatrix is passed in by nonconst
/// reference to RCP.) Otherwise it checks for "pristine" status
/// and throws if that is not the case. "Pristine" means that the
/// matrix has no entries and is not fill complete.
///
/// Use of the "non-member constructor" version of this method,
/// exportAndFillCompleteCrsMatrix, is preferred for user
/// applications.
///
/// \warning This method is intended for expert developer use
/// only, and should never be called by user code.
void
importAndFillComplete (Teuchos::RCP<CrsMatrix<Scalar, LocalOrdinal, GlobalOrdinal, Node, classic> >& destMatrix,
const import_type& rowImporter,
const import_type& domainImporter,
const Teuchos::RCP<const map_type>& domainMap,
const Teuchos::RCP<const map_type>& rangeMap,
const Teuchos::RCP<Teuchos::ParameterList>& params) const;
/// \brief Export from <tt>this</tt> to the given destination
/// matrix, and make the result fill complete.
///
/// If destMatrix.is_null(), this creates a new matrix as the
/// destination. (This is why destMatrix is passed in by nonconst
/// reference to RCP.) Otherwise it checks for "pristine" status
/// and throws if that is not the case. "Pristine" means that the
/// matrix has no entries and is not fill complete.
///
/// Use of the "non-member constructor" version of this method,
/// exportAndFillCompleteCrsMatrix, is preferred for user
/// applications.
///
/// \warning This method is intended for expert developer use
/// only, and should never be called by user code.
void
exportAndFillComplete (Teuchos::RCP<CrsMatrix<Scalar, LocalOrdinal, GlobalOrdinal, Node, classic> >& destMatrix,
const export_type& exporter,
const Teuchos::RCP<const map_type>& domainMap = Teuchos::null,
const Teuchos::RCP<const map_type>& rangeMap = Teuchos::null,
const Teuchos::RCP<Teuchos::ParameterList>& params = Teuchos::null) const;
/// \brief Export from <tt>this</tt> to the given destination
/// matrix, and make the result fill complete.
///
/// If destMatrix.is_null(), this creates a new matrix as the
/// destination. (This is why destMatrix is passed in by nonconst
/// reference to RCP.) Otherwise it checks for "pristine" status
/// and throws if that is not the case. "Pristine" means that the
/// matrix has no entries and is not fill complete.
///
/// Use of the "non-member constructor" version of this method,
/// exportAndFillCompleteCrsMatrix, is preferred for user
/// applications.
///
/// \warning This method is intended for expert developer use
/// only, and should never be called by user code.
void
exportAndFillComplete (Teuchos::RCP<CrsMatrix<Scalar, LocalOrdinal, GlobalOrdinal, Node, classic> >& destMatrix,
const export_type& rowExporter,
const export_type& domainExporter,
const Teuchos::RCP<const map_type>& domainMap,
const Teuchos::RCP<const map_type>& rangeMap,
const Teuchos::RCP<Teuchos::ParameterList>& params) const;
private:
/// \brief Transfer (e.g. Import/Export) from <tt>this</tt> to the
/// given destination matrix, and make the result fill complete.
///
/// If destMat.is_null(), this creates a new matrix, otherwise it
/// checks for "pristine" status and throws if that is not the
/// case. This method implements importAndFillComplete and
/// exportAndFillComplete, which in turn implemment the nonmember
/// "constructors" importAndFillCompleteCrsMatrix and
/// exportAndFillCompleteCrsMatrix. It's convenient to put those
/// nonmember constructors' implementations inside the CrsMatrix
/// class, so that we don't have to put much code in the _decl
/// header file.
///
/// The point of this method is to fuse three tasks:
///
/// 1. Create a destination matrix (CrsMatrix constructor)
/// 2. Import or Export this matrix to the destination matrix
/// 3. Call fillComplete on the destination matrix
///
/// Fusing these tasks can avoid some communication and work.
void
transferAndFillComplete (Teuchos::RCP<CrsMatrix<Scalar, LocalOrdinal, GlobalOrdinal, Node, classic> >& destMatrix,
const ::Tpetra::Details::Transfer<LocalOrdinal, GlobalOrdinal, Node>& rowTransfer,
const Teuchos::RCP<const ::Tpetra::Details::Transfer<LocalOrdinal, GlobalOrdinal, Node> > & domainTransfer,
const Teuchos::RCP<const map_type>& domainMap = Teuchos::null,
const Teuchos::RCP<const map_type>& rangeMap = Teuchos::null,
const Teuchos::RCP<Teuchos::ParameterList>& params = Teuchos::null) const;
// We forbid copy construction by declaring this method private
// and not implementing it.
CrsMatrix (const CrsMatrix<Scalar, LocalOrdinal, GlobalOrdinal, Node, classic>& rhs);
// We forbid assignment (operator=) by declaring this method
// private and not implementing it.
CrsMatrix<Scalar, LocalOrdinal, GlobalOrdinal, Node, classic>&
operator= (const CrsMatrix<Scalar, LocalOrdinal, GlobalOrdinal, Node, classic>& rhs);
/// \brief Like insertGlobalValues(), but with column filtering.
///
/// "Column filtering" means that if the matrix has a column Map,
/// then this method ignores entries in columns that are not in
/// the column Map.
///
/// See discussion in the documentation of getGlobalRowCopy()
/// about why we use \c Scalar and not \c impl_scalar_type here
/// for the input array type.
void
insertGlobalValuesFiltered (const GlobalOrdinal globalRow,
const Teuchos::ArrayView<const GlobalOrdinal>& indices,
const Teuchos::ArrayView<const Scalar>& values);
/// \brief Like insertLocalValues(), but with column filtering.
///
/// "Column filtering" means that if the matrix has a column Map,
/// then this method ignores entries in columns that are not in
/// the column Map.
///
/// See discussion in the documentation of getGlobalRowCopy()
/// about why we use \c Scalar and not \c impl_scalar_type here
/// for the input array type.
void
insertLocalValuesFiltered (const LocalOrdinal localRow,
const Teuchos::ArrayView<const LocalOrdinal>& indices,
const Teuchos::ArrayView<const Scalar>& values);
/// \brief Combine in the data using the given combine mode.
///
/// The copyAndPermute() and unpackAndCombine() methods use this
/// function to combine incoming entries from the source matrix
/// with the target matrix's current data. This method's behavior
/// depends on whether the target matrix (that is, this matrix)
/// has a static graph.
///
/// See discussion in the documentation of getGlobalRowCopy()
/// about why we use \c Scalar and not \c impl_scalar_type here
/// for the input array type.
void
combineGlobalValues (const GlobalOrdinal globalRowIndex,
const Teuchos::ArrayView<const GlobalOrdinal>& columnIndices,
const Teuchos::ArrayView<const Scalar>& values,
const Tpetra::CombineMode combineMode);
/// \brief Transform CrsMatrix entries, using global indices;
/// backwards compatibility version that takes
/// Teuchos::ArrayView instead of Kokkos::View.
///
/// See above overload of transformGlobalValues for full documentation.
///
/// \tparam BinaryFunction The type of binary function to apply.
///
/// \param globalRow [in] (Global) index of the row to modify.
/// \param indices [in] (Global) indices in the row to modify.
/// \param values [in] Values to use for modification.
template<class BinaryFunction>
LocalOrdinal
transformGlobalValues (const GlobalOrdinal globalRow,
const Teuchos::ArrayView<const GlobalOrdinal>& indices,
const Teuchos::ArrayView<const Scalar>& values,
BinaryFunction f,
const bool atomic = useAtomicUpdatesByDefault) const
{
using Kokkos::MemoryUnmanaged;
using Kokkos::View;
typedef impl_scalar_type ST;
typedef BinaryFunction BF;
typedef GlobalOrdinal GO;
typedef device_type DD;
typedef typename View<GO*, DD>::HostMirror::device_type HD;
// The 'indices' and 'values' arrays come from the user, so we
// assume that they are host data, not device data.
const ST* const rawInputVals =
reinterpret_cast<const ST*> (values.getRawPtr ());
View<const ST*, HD, MemoryUnmanaged> inputValsK (rawInputVals,
values.size ());
View<const GO*, HD, MemoryUnmanaged> inputIndsK (indices.getRawPtr (),
indices.size ());
return this->template transformGlobalValues<BF, HD> (globalRow,
inputIndsK,
inputValsK,
f, atomic);
}
private:
/// \brief Special case of insertGlobalValues for when globalRow
/// is <i>not<i> owned by the calling process.
///
/// See discussion in the documentation of getGlobalRowCopy()
/// about why we use \c Scalar and not \c impl_scalar_type here
/// for the input array type.
void
insertNonownedGlobalValues (const GlobalOrdinal globalRow,
const Teuchos::ArrayView<const GlobalOrdinal>& indices,
const Teuchos::ArrayView<const Scalar>& values);
//! Type of the DistObject specialization from which this class inherits.
typedef DistObject<char, LocalOrdinal, GlobalOrdinal, Node, classic> dist_object_type;
protected:
// useful typedefs
typedef Teuchos::OrdinalTraits<LocalOrdinal> OTL;
typedef Kokkos::Details::ArithTraits<impl_scalar_type> STS;
typedef Kokkos::Details::ArithTraits<mag_type> STM;
typedef MultiVector<Scalar, LocalOrdinal, GlobalOrdinal, Node, classic> MV;
typedef Vector<Scalar, LocalOrdinal, GlobalOrdinal, Node, classic> V;
typedef crs_graph_type Graph;
// Enums
enum GraphAllocationStatus {
GraphAlreadyAllocated,
GraphNotYetAllocated
};
/// \brief Allocate values (and optionally indices) using the Node.
///
/// \param gas [in] If GraphNotYetAllocated, allocate the
/// indices of \c myGraph_ via \c allocateIndices(lg) before
/// allocating values.
///
/// \param lg [in] Argument passed into \c
/// myGraph_->allocateIndices(), if applicable.
///
/// \pre If the graph (that is, staticGraph_) indices are
/// already allocated, then gas must be GraphAlreadyAllocated.
/// Otherwise, gas must be GraphNotYetAllocated. We only
/// check for this precondition in debug mode.
///
/// \pre If the graph indices are not already allocated, then
/// the graph must be owned by the matrix.
void allocateValues (ELocalGlobal lg, GraphAllocationStatus gas);
/// \brief Sort the entries of each row by their column indices.
///
/// This only does anything if the graph isn't already sorted
/// (i.e., ! myGraph_->isSorted ()). This method is called in
/// fillComplete().
void sortEntries();
/// \brief Merge entries in each row with the same column indices.
///
/// This only does anything if the graph isn't already merged
/// (i.e., ! myGraph_->isMerged ()). This method is called in
/// fillComplete().
void mergeRedundantEntries();
/// \brief Clear matrix properties that require collectives.
///
/// This clears whatever computeGlobalConstants() (which see)
/// computed, in preparation for changes to the matrix. The
/// current implementation of this method does nothing.
///
/// This method is called in resumeFill().
void clearGlobalConstants();
/// \brief Compute matrix properties that require collectives.
///
/// The corresponding Epetra_CrsGraph method computes things
/// like the global number of nonzero entries, that require
/// collectives over the matrix's communicator. The current
/// Tpetra implementation of this method does nothing.
///
/// This method is called in fillComplete().
void computeGlobalConstants();
/// \brief Column Map MultiVector used in apply() and gaussSeidel().
///
/// This is a column Map MultiVector. It is used as the target of
/// the forward mode Import operation (if necessary) in apply()
/// and gaussSeidel(), and the source of the reverse mode Export
/// operation (if necessary) in these methods. Both of these
/// methods create this MultiVector on demand if needed, and reuse
/// it (if possible) for subsequent calls.
///
/// This is declared <tt>mutable</tt> because the methods in
/// question are const, yet want to cache the MultiVector for
/// later use.
mutable Teuchos::RCP<MV> importMV_;
/// \brief Row Map MultiVector used in apply().
///
/// This is a row Map MultiVector. It is uses as the source of
/// the forward mode Export operation (if necessary) in apply()
/// and gaussSeidel(), and the target of the reverse mode Import
/// operation (if necessary) in these methods. Both of these
/// methods create this MultiVector on demand if needed, and reuse
/// it (if possible) for subsequent calls.
///
/// This is declared <tt>mutable</tt> because the methods in
/// question are const, yet want to cache the MultiVector for
/// later use.
mutable Teuchos::RCP<MV> exportMV_;
/// \brief Create a (or fetch a cached) column Map MultiVector.
///
/// \param X_domainMap [in] A domain Map Multivector. The
/// returned MultiVector, if nonnull, will have the same number
/// of columns as Y_domainMap.
///
/// \param force [in] Force creating the MultiVector if it hasn't
/// been created already.
///
/// The \c force parameter is helpful when the domain Map and the
/// column Map are the same (so that normally we wouldn't need the
/// column Map MultiVector), but the following (for example)
/// holds:
///
/// 1. The kernel needs a constant stride input MultiVector, but
/// the given input MultiVector is not constant stride.
///
/// We don't test for the above in this method, because it depends
/// on the specific kernel.
Teuchos::RCP<MV>
getColumnMapMultiVector (const MV& X_domainMap,
const bool force = false) const;
/// \brief Create a (or fetch a cached) row Map MultiVector.
///
/// \param Y_rangeMap [in] A range Map Multivector. The returned
/// MultiVector, if nonnull, will have the same number of
/// columns as Y_rangeMap.
///
/// \param force [in] Force creating the MultiVector if it hasn't
/// been created already.
///
/// The \c force parameter is helpful when the range Map and the
/// row Map are the same (so that normally we wouldn't need the
/// row Map MultiVector), but one of the following holds:
///
/// 1. The kernel needs a constant stride output MultiVector,
/// but the given output MultiVector is not constant stride.
///
/// 2. The kernel does not permit aliasing of its input and output
/// MultiVector arguments, but they do alias each other.
///
/// We don't test for the above in this method, because it depends
/// on the specific kernel.
Teuchos::RCP<MV>
getRowMapMultiVector (const MV& Y_rangeMap,
const bool force = false) const;
//! Special case of apply() for <tt>mode == Teuchos::NO_TRANS</tt>.
void
applyNonTranspose (const MV& X_in,
MV& Y_in,
Scalar alpha,
Scalar beta) const;
//! Special case of apply() for <tt>mode != Teuchos::NO_TRANS</tt>.
void
applyTranspose (const MV& X_in,
MV& Y_in,
const Teuchos::ETransp mode,
Scalar alpha,
Scalar beta) const;
// matrix data accessors
/// \brief Const pointer to all entries (including extra space) in
/// the given row.
///
/// Unlike getGlobalRowView(), this method returns
/// <tt>impl_scalar_type</tt>, not \c Scalar. This is because
/// this method is <i>not</i> part of the public interface of
/// CrsMatrix.
///
/// \param vals [out] On output: Const pointer to all entries,
/// including any extra space, in the given row. \c numEnt
/// includes the empty space, if any.
/// \param numEnt [out] Number of available entries in the row.
/// "Available" includes extra empty space, if any.
/// \param rowinfo [in] Result of getRowInfo (for a local row
/// index) or getRowInfoFromGlobalRowIndex (for a global row
/// index) for the row.
///
/// \return Zero if no error, else a nonzero error code.
LocalOrdinal
getViewRawConst (const impl_scalar_type*& vals,
LocalOrdinal& numEnt,
const RowInfo& rowinfo) const;
/// \brief Nonconst pointer to all entries (including extra space)
/// in the given row.
///
/// Unlike getGlobalRowView(), this method returns
/// <tt>impl_scalar_type</tt>, not \c Scalar. This is because
/// this method is <i>not</i> part of the public interface of
/// CrsMatrix.
///
/// \param vals [out] On output: Const pointer to all entries,
/// including any extra space, in the given row. \c numEnt
/// includes the empty space, if any.
/// \param numEnt [out] Number of available entries in the row.
/// "Available" includes extra empty space, if any.
/// \param rowinfo [in] Result of getRowInfo (for a local row
/// index) or getRowInfoFromGlobalRowIndex (for a global row
/// index) for the row.
///
/// \return Zero if no error, else a nonzero error code.
LocalOrdinal
getViewRaw (impl_scalar_type*& vals,
LocalOrdinal& numEnt,
const RowInfo& rowinfo) const;
/// \brief Constant view of all entries (including extra space) in
/// the given row.
///
/// Unlike getGlobalRowView(), this method returns
/// <tt>impl_scalar_type</tt>, not \c Scalar. This is because
/// this method is <i>not</i> part of the public interface of
/// CrsMatrix.
Teuchos::ArrayView<const impl_scalar_type> getView (RowInfo rowinfo) const;
/// \brief Nonconst view of all entries (including extra space) in
/// the given row.
///
/// Unlike getGlobalRowView(), this method returns
/// <tt>impl_scalar_type</tt>, not \c Scalar. This is because
/// this method is <i>not</i> part of the public interface of
/// CrsMatrix.
///
/// This method is \c const because it doesn't change allocations
/// (and thus doesn't change pointers). Consider the difference
/// between <tt>const double*</tt> and <tt>double* const</tt>.
Teuchos::ArrayView<impl_scalar_type> getViewNonConst (const RowInfo& rowinfo) const;
private:
/// \brief Constant view of all entries (including extra space) in
/// the given row.
///
/// Unlike getGlobalRowView(), this method returns
/// <tt>impl_scalar_type</tt>, not \c Scalar. This is because
/// this method is <i>not</i> part of the public interface of
/// CrsMatrix.
Kokkos::View<const impl_scalar_type*, execution_space, Kokkos::MemoryUnmanaged>
getRowView (const RowInfo& rowInfo) const;
/// \brief Nonconst view of all entries (including extra space) in
/// the given row.
///
/// Unlike getGlobalRowView(), this method returns
/// <tt>impl_scalar_type</tt>, not \c Scalar. This is because
/// this method is <i>not</i> part of the public interface of
/// CrsMatrix.
///
/// This method is \c const because it doesn't change allocations
/// (and thus doesn't change pointers). Consider the difference
/// between <tt>const double*</tt> and <tt>double* const</tt>.
Kokkos::View<impl_scalar_type*, execution_space, Kokkos::MemoryUnmanaged>
getRowViewNonConst (const RowInfo& rowInfo) const;
protected:
/// \brief Fill data into the local matrix.
///
/// This method is only called in fillComplete(), and it is only
/// called if the graph's structure is already fixed (that is, if
/// the matrix does not own the graph).
void fillLocalMatrix (const Teuchos::RCP<Teuchos::ParameterList>& params);
/// \brief Fill data into the local graph and matrix.
///
/// This method is only called in fillComplete(), and it is only
/// called if the graph's structure is <i>not</i> already fixed
/// (that is, if the matrix <i>does</i> own the graph).
void fillLocalGraphAndMatrix (const Teuchos::RCP<Teuchos::ParameterList>& params);
//! Check that this object's state is sane; throw if it's not.
void checkInternalState () const;
/// \name (Global) graph pointers
///
/// We keep two graph pointers in order to maintain const
/// correctness. myGraph_ is a graph which we create internally.
/// Operations that change the sparsity structure also modify
/// myGraph_. If myGraph_ != null, then staticGraph_ == myGraph_
/// pointerwise (we set the pointers equal to each other when we
/// create myGraph_). myGraph_ is only null if this CrsMatrix was
/// created using the constructor with a const CrsGraph input
/// argument. In this case, staticGraph_ is set to the input
/// CrsGraph.
//@{
Teuchos::RCP<const Graph> staticGraph_;
Teuchos::RCP< Graph> myGraph_;
//@}
//! The local sparse matrix.
local_matrix_type lclMatrix_;
/// \name Sparse matrix values.
///
/// k_values1D_ represents the values assuming "1-D" compressed
/// sparse row storage. values2D_ represents the values as an
/// array of arrays, one (inner) array per row of the sparse
/// matrix.
///
/// Before allocation, both arrays are null. After allocation,
/// one is null. If static allocation, then values2D_ is null.
/// If dynamic allocation, then k_values1D_ is null. The
/// allocation always matches that of graph_, as the graph does
/// the allocation for the matrix.
//@{
typename local_matrix_type::values_type k_values1D_;
Teuchos::ArrayRCP<Teuchos::Array<impl_scalar_type> > values2D_;
//@}
/// \brief Status of the matrix's storage, when not in a
/// fill-complete state.
///
/// The phrase "When not in a fill-complete state" is important.
/// When the matrix is fill complete, it <i>always</i> uses 1-D
/// "packed" storage. However, if the "Optimize Storage"
/// parameter to fillComplete was false, the matrix may keep
/// unpacked 1-D or 2-D storage around and resume it on the next
/// resumeFill call.
Details::EStorageStatus storageStatus_;
//! Whether the matrix is fill complete.
bool fillComplete_;
/// \brief Nonlocal data added using insertGlobalValues().
///
/// These data are cleared by globalAssemble(), once it finishes
/// redistributing them to their owning processes.
///
/// For a given nonowned global row gRow which was given to
/// insertGlobalValues() or sumIntoGlobalValues(),
/// <tt>nonlocals_[gRow].first[k]</tt> is the column index of an
/// inserted entry, and <tt>nonlocals_[gRow].second[k]</tt> is its
/// value. Duplicate column indices for the same row index are
/// allowed and will be summed during globalAssemble().
///
/// This used to be a map from GlobalOrdinal to (GlobalOrdinal,
/// Scalar) pairs. This makes gcc issue a "note" about the ABI of
/// structs containing std::complex members changing. CDash
/// reports this as a warning, even though it's a "note," not a
/// warning. However, I don't want it to show up, so I rearranged
/// the map's value type to a pair of arrays, rather than an array
/// of pairs.
///
/// \note For Epetra developers: Tpetra::CrsMatrix corresponds
/// more to Epetra_FECrsMatrix than to Epetra_CrsMatrix. The
/// insertGlobalValues() method in Tpetra::CrsMatrix, unlike
/// its corresponding method in Epetra_CrsMatrix, allows
/// insertion into rows which are not owned by the calling
/// process. The globalAssemble() method redistributes these
/// to their owning processes.
std::map<GlobalOrdinal, std::pair<Teuchos::Array<GlobalOrdinal>,
Teuchos::Array<Scalar> > > nonlocals_;
/// \brief Cached Frobenius norm of the (global) matrix.
///
/// The value -1 means that the norm has not yet been computed, or
/// that the values in the matrix may have changed and the norm
/// must be recomputed.
mutable mag_type frobNorm_;
public:
// FIXME (mfh 24 Feb 2014) Is it _really_ necessary to make this a
// public inner class of CrsMatrix? It looks like it doesn't
// depend on any implementation details of CrsMatrix at all. It
// should really be declared and defined outside of CrsMatrix.
template<class ViewType, class OffsetViewType>
struct pack_functor {
typedef typename ViewType::execution_space execution_space;
ViewType src_;
ViewType dst_;
OffsetViewType src_offset_;
OffsetViewType dst_offset_;
typedef typename OffsetViewType::non_const_value_type scalar_index_type;
pack_functor (ViewType dst, ViewType src,
OffsetViewType dst_offset, OffsetViewType src_offset) :
src_ (src),
dst_ (dst),
src_offset_ (src_offset),
dst_offset_ (dst_offset)
{}
KOKKOS_INLINE_FUNCTION
void operator () (const LocalOrdinal row) const {
scalar_index_type srcPos = src_offset_(row);
const scalar_index_type dstEnd = dst_offset_(row+1);
scalar_index_type dstPos = dst_offset_(row);
for ( ; dstPos < dstEnd; ++dstPos, ++srcPos) {
dst_(dstPos) = src_(srcPos);
}
}
};
}; // class CrsMatrix
/** \brief Non-member function to create an empty CrsMatrix given a
row map and a non-zero profile.
\return A dynamically allocated (DynamicProfile) matrix with
specified number of nonzeros per row (defaults to zero).
\relatesalso CrsMatrix
*/
template <class Scalar, class LocalOrdinal, class GlobalOrdinal, class Node, const bool classic = Node::classic>
Teuchos::RCP<CrsMatrix<Scalar, LocalOrdinal, GlobalOrdinal, Node, classic> >
createCrsMatrix (const Teuchos::RCP<const Map<LocalOrdinal, GlobalOrdinal, Node> >& map,
size_t maxNumEntriesPerRow = 0,
const Teuchos::RCP<Teuchos::ParameterList>& params = Teuchos::null)
{
typedef CrsMatrix<Scalar, LocalOrdinal, GlobalOrdinal, Node, classic> matrix_type;
return Teuchos::rcp (new matrix_type (map, maxNumEntriesPerRow,
DynamicProfile, params));
}
/// \brief Nonmember CrsMatrix constructor that fuses Import and fillComplete().
/// \relatesalso CrsMatrix
/// \tparam CrsMatrixType A specialization of CrsMatrix.
///
/// A common use case is to create an empty destination CrsMatrix,
/// redistribute from a source CrsMatrix (by an Import or Export
/// operation), then call fillComplete() on the destination
/// CrsMatrix. This constructor fuses these three cases, for an
/// Import redistribution.
///
/// Fusing redistribution and fillComplete() exposes potential
/// optimizations. For example, it may make constructing the column
/// Map faster, and it may avoid intermediate unoptimized storage in
/// the destination CrsMatrix. These optimizations may improve
/// performance for specialized kernels like sparse matrix-matrix
/// multiply, as well as for redistributing data after doing load
/// balancing.
///
/// The resulting matrix is fill complete (in the sense of
/// isFillComplete()) and has optimized storage (in the sense of
/// isStorageOptimized()). By default, its domain Map is the domain
/// Map of the source matrix, and its range Map is the range Map of
/// the source matrix.
///
/// \warning If the target Map of the Import is a subset of the
/// source Map of the Import, then you cannot use the default
/// range Map. You should instead construct a nonoverlapping
/// version of the target Map and supply that as the nondefault
/// value of the range Map.
///
/// \param sourceMatrix [in] The source matrix from which to
/// import. The source of an Import must have a nonoverlapping
/// distribution.
///
/// \param importer [in] The Import instance containing a
/// precomputed redistribution plan. The source Map of the
/// Import must be the same as the rowMap of sourceMatrix unless
/// the "Reverse Mode" option on the params list, in which case
/// the targetMap of Import must match the rowMap of the sourceMatrix
///
/// \param domainMap [in] Domain Map of the returned matrix. If
/// null, we use the default, which is the domain Map of the
/// source matrix.
///
/// \param rangeMap [in] Range Map of the returned matrix. If
/// null, we use the default, which is the range Map of the
/// source matrix.
///
/// \param params [in/out] Optional list of parameters. If not
/// null, any missing parameters will be filled in with their
/// default values.
template<class CrsMatrixType>
Teuchos::RCP<CrsMatrixType>
importAndFillCompleteCrsMatrix (const Teuchos::RCP<const CrsMatrixType>& sourceMatrix,
const Import<typename CrsMatrixType::local_ordinal_type,
typename CrsMatrixType::global_ordinal_type,
typename CrsMatrixType::node_type>& importer,
const Teuchos::RCP<const Map<typename CrsMatrixType::local_ordinal_type,
typename CrsMatrixType::global_ordinal_type,
typename CrsMatrixType::node_type> >& domainMap = Teuchos::null,
const Teuchos::RCP<const Map<typename CrsMatrixType::local_ordinal_type,
typename CrsMatrixType::global_ordinal_type,
typename CrsMatrixType::node_type> >& rangeMap = Teuchos::null,
const Teuchos::RCP<Teuchos::ParameterList>& params = Teuchos::null)
{
Teuchos::RCP<CrsMatrixType> destMatrix;
sourceMatrix->importAndFillComplete (destMatrix,importer,domainMap, rangeMap, params);
return destMatrix;
}
/// \brief Nonmember CrsMatrix constructor that fuses Import and fillComplete().
/// \relatesalso CrsMatrix
/// \tparam CrsMatrixType A specialization of CrsMatrix.
///
/// A common use case is to create an empty destination CrsMatrix,
/// redistribute from a source CrsMatrix (by an Import or Export
/// operation), then call fillComplete() on the destination
/// CrsMatrix. This constructor fuses these three cases, for an
/// Import redistribution.
///
/// Fusing redistribution and fillComplete() exposes potential
/// optimizations. For example, it may make constructing the column
/// Map faster, and it may avoid intermediate unoptimized storage in
/// the destination CrsMatrix. These optimizations may improve
/// performance for specialized kernels like sparse matrix-matrix
/// multiply, as well as for redistributing data after doing load
/// balancing.
///
/// The resulting matrix is fill complete (in the sense of
/// isFillComplete()) and has optimized storage (in the sense of
/// isStorageOptimized()). By default, its domain Map is the domain
/// Map of the source matrix, and its range Map is the range Map of
/// the source matrix.
///
/// \warning If the target Map of the Import is a subset of the
/// source Map of the Import, then you cannot use the default
/// range Map. You should instead construct a nonoverlapping
/// version of the target Map and supply that as the nondefault
/// value of the range Map.
///
/// \param sourceMatrix [in] The source matrix from which to
/// import. The source of an Import must have a nonoverlapping
/// distribution.
///
/// \param rowImporter [in] The Import instance containing a
/// precomputed redistribution plan. The source Map of the
/// Import must be the same as the rowMap of sourceMatrix unless
/// the "Reverse Mode" option on the params list, in which case
/// the targetMap of Import must match the rowMap of the sourceMatrix
///
/// \param domainImporter [in] The Import instance containing a
/// precomputed redistribution plan. The source Map of the
/// Import must be the same as the domainMap of sourceMatrix unless
/// the "Reverse Mode" option on the params list, in which case
/// the targetMap of Import must match the domainMap of the sourceMatrix
///
/// \param domainMap [in] Domain Map of the returned matrix.
///
/// \param rangeMap [in] Range Map of the returned matrix.
///
/// \param params [in/out] Optional list of parameters. If not
/// null, any missing parameters will be filled in with their
/// default values.
template<class CrsMatrixType>
Teuchos::RCP<CrsMatrixType>
importAndFillCompleteCrsMatrix (const Teuchos::RCP<const CrsMatrixType>& sourceMatrix,
const Import<typename CrsMatrixType::local_ordinal_type,
typename CrsMatrixType::global_ordinal_type,
typename CrsMatrixType::node_type>& rowImporter,
const Import<typename CrsMatrixType::local_ordinal_type,
typename CrsMatrixType::global_ordinal_type,
typename CrsMatrixType::node_type>& domainImporter,
const Teuchos::RCP<const Map<typename CrsMatrixType::local_ordinal_type,
typename CrsMatrixType::global_ordinal_type,
typename CrsMatrixType::node_type> >& domainMap,
const Teuchos::RCP<const Map<typename CrsMatrixType::local_ordinal_type,
typename CrsMatrixType::global_ordinal_type,
typename CrsMatrixType::node_type> >& rangeMap,
const Teuchos::RCP<Teuchos::ParameterList>& params)
{
Teuchos::RCP<CrsMatrixType> destMatrix;
sourceMatrix->importAndFillComplete (destMatrix,rowImporter,domainImporter, domainMap, rangeMap, params);
return destMatrix;
}
/// \brief Nonmember CrsMatrix constructor that fuses Export and fillComplete().
/// \relatesalso CrsMatrix
/// \tparam CrsMatrixType A specialization of CrsMatrix.
///
/// For justification, see the documentation of
/// importAndFillCompleteCrsMatrix() (which is the Import analog of
/// this function).
///
/// The resulting matrix is fill complete (in the sense of
/// isFillComplete()) and has optimized storage (in the sense of
/// isStorageOptimized()). By default, its domain Map is the domain
/// Map of the source matrix, and its range Map is the range Map of
/// the source matrix.
///
/// \param sourceMatrix [in] The source matrix from which to
/// export. Its row Map may be overlapping, since the source of
/// an Export may be overlapping.
///
/// \param exporter [in] The Export instance containing a
/// precomputed redistribution plan. The source Map of the
/// Export must be the same as the row Map of sourceMatrix.
///
/// \param domainMap [in] Domain Map of the returned matrix. If
/// null, we use the default, which is the domain Map of the
/// source matrix.
///
/// \param rangeMap [in] Range Map of the returned matrix. If
/// null, we use the default, which is the range Map of the
/// source matrix.
///
/// \param params [in/out] Optional list of parameters. If not
/// null, any missing parameters will be filled in with their
/// default values.
template<class CrsMatrixType>
Teuchos::RCP<CrsMatrixType>
exportAndFillCompleteCrsMatrix (const Teuchos::RCP<const CrsMatrixType>& sourceMatrix,
const Export<typename CrsMatrixType::local_ordinal_type,
typename CrsMatrixType::global_ordinal_type,
typename CrsMatrixType::node_type>& exporter,
const Teuchos::RCP<const Map<typename CrsMatrixType::local_ordinal_type,
typename CrsMatrixType::global_ordinal_type,
typename CrsMatrixType::node_type> >& domainMap = Teuchos::null,
const Teuchos::RCP<const Map<typename CrsMatrixType::local_ordinal_type,
typename CrsMatrixType::global_ordinal_type,
typename CrsMatrixType::node_type> >& rangeMap = Teuchos::null,
const Teuchos::RCP<Teuchos::ParameterList>& params = Teuchos::null)
{
Teuchos::RCP<CrsMatrixType> destMatrix;
sourceMatrix->exportAndFillComplete (destMatrix,exporter,domainMap, rangeMap, params);
return destMatrix;
}
/// \brief Nonmember CrsMatrix constructor that fuses Export and fillComplete().
/// \relatesalso CrsMatrix
/// \tparam CrsMatrixType A specialization of CrsMatrix.
///
/// For justification, see the documentation of
/// importAndFillCompleteCrsMatrix() (which is the Import analog of
/// this function).
///
/// The resulting matrix is fill complete (in the sense of
/// isFillComplete()) and has optimized storage (in the sense of
/// isStorageOptimized()). By default, its domain Map is the domain
/// Map of the source matrix, and its range Map is the range Map of
/// the source matrix.
///
/// \param sourceMatrix [in] The source matrix from which to
/// export. Its row Map may be overlapping, since the source of
/// an Export may be overlapping.
///
/// \param rowExporter [in] The Export instance containing a
/// precomputed redistribution plan. The source Map of the
/// Export must be the same as the row Map of sourceMatrix.
///
/// \param domainExporter [in] The Export instance containing a
/// precomputed redistribution plan. The source Map of the
/// Export must be the same as the domain Map of sourceMatrix.
///
/// \param domainMap [in] Domain Map of the returned matrix.
///
/// \param rangeMap [in] Range Map of the returned matrix.
///
/// \param params [in/out] Optional list of parameters. If not
/// null, any missing parameters will be filled in with their
/// default values.
template<class CrsMatrixType>
Teuchos::RCP<CrsMatrixType>
exportAndFillCompleteCrsMatrix (const Teuchos::RCP<const CrsMatrixType>& sourceMatrix,
const Export<typename CrsMatrixType::local_ordinal_type,
typename CrsMatrixType::global_ordinal_type,
typename CrsMatrixType::node_type>& rowExporter,
const Export<typename CrsMatrixType::local_ordinal_type,
typename CrsMatrixType::global_ordinal_type,
typename CrsMatrixType::node_type>& domainExporter,
const Teuchos::RCP<const Map<typename CrsMatrixType::local_ordinal_type,
typename CrsMatrixType::global_ordinal_type,
typename CrsMatrixType::node_type> >& domainMap,
const Teuchos::RCP<const Map<typename CrsMatrixType::local_ordinal_type,
typename CrsMatrixType::global_ordinal_type,
typename CrsMatrixType::node_type> >& rangeMap,
const Teuchos::RCP<Teuchos::ParameterList>& params)
{
Teuchos::RCP<CrsMatrixType> destMatrix;
sourceMatrix->exportAndFillComplete (destMatrix,rowExporter,domainExporter,domainMap, rangeMap, params);
return destMatrix;
}
} // namespace Tpetra
/**
\example CrsMatrix_NonlocalAfterResume.hpp
\brief An example for inserting non-local entries into a
Tpetra::CrsMatrix using Tpetra::CrsMatrix::insertGlobalValues(),
with multiple calls to Tpetra::CrsMatrix::fillComplete().
*/
#endif // TPETRA_CRSMATRIX_DECL_HPP
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