/usr/include/trilinos/Tpetra_MultiVectorFiller.hpp is in libtrilinos-tpetra-dev 12.10.1-3.
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// ***********************************************************************
//
// Tpetra: Templated Linear Algebra Services Package
// Copyright (2008) Sandia Corporation
//
// Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation,
// the U.S. Government retains certain rights in this software.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// 1. Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//
// 2. Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
//
// 3. Neither the name of the Corporation nor the names of the
// contributors may be used to endorse or promote products derived from
// this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
// PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE
// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
// PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
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// SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// Questions? Contact Michael A. Heroux (maherou@sandia.gov)
//
// ************************************************************************
// @HEADER
#ifndef __Tpetra_MultiVectorFiller_hpp
#define __Tpetra_MultiVectorFiller_hpp
#include "Tpetra_MultiVector.hpp"
#include "Tpetra_Vector.hpp"
#include "Teuchos_CommHelpers.hpp"
#include <iterator>
#include <set>
namespace Tpetra {
namespace Details {
// \fn sortAndMergeIn
// \brief Sort and merge newEntries into allEntries, and make unique.
//
// \param allEntries [in/out]: Array in which current entries have
// already been stored, and in which the new entries are to be
// stored. Passed by reference in case we need to resize it.
//
// \param currentEntries [in/out]: Current entries, which we assume
// have already been sorted and made unique. Aliases the
// beginning of allEntries.
//
// \param newEntries [in/out] New entries, which have not yet been
// sorted or made unique. This does <i>not</i> alias allEntries.
//
// Sort and make entries of newEntries unique. Resize allEntries if
// necessary to fit the unique entries of newEntries. Merge
// newEntries into allEntries and make the results unique. (This is
// cheaper than sorting the whole array.)
//
// \return A view of all the entries (current and new) in allEntries.
template<class T>
Teuchos::ArrayView<T>
sortAndMergeIn (Teuchos::Array<T>& allEntries,
Teuchos::ArrayView<T> currentEntries,
Teuchos::ArrayView<T> newEntries)
{
using Teuchos::ArrayView;
using Teuchos::as;
typedef typename ArrayView<T>::iterator iter_type;
typedef typename ArrayView<T>::size_type size_type;
std::sort (newEntries.begin(), newEntries.end());
iter_type it = std::unique (newEntries.begin(), newEntries.end());
const size_type numNew = as<size_type> (it - newEntries.begin());
// View of the sorted, made-unique new entries to merge in.
ArrayView<T> newEntriesView = newEntries.view (0, numNew);
const size_type numCur = currentEntries.size();
if (allEntries.size() < numCur + numNew) {
allEntries.resize (numCur + numNew);
}
ArrayView<T> allView = allEntries.view (0, numCur + numNew);
ArrayView<T> newView = allEntries.view (numCur, numNew); // target of copy
std::copy (newEntries.begin(), newEntries.end(), newView.begin());
std::inplace_merge (allView.begin(), newView.begin(), allView.end());
iter_type it2 = std::unique (allView.begin(), allView.end());
const size_type numTotal = as<size_type> (it2 - allView.begin());
return allEntries.view (0, numTotal);
}
/// \class MultiVectorFillerData
/// \brief Implementation of fill and local assembly for MultiVectorFiller.
/// \author Mark Hoemmen
///
/// \tparam MV Specialization of Tpetra::MultiVector.
template<class MV>
class MultiVectorFillerData {
public:
typedef typename MV::scalar_type scalar_type;
typedef typename MV::local_ordinal_type local_ordinal_type;
typedef typename MV::global_ordinal_type global_ordinal_type;
typedef typename MV::node_type node_type;
typedef ::Tpetra::Map<local_ordinal_type, global_ordinal_type, node_type> map_type;
/// \brief Default constructor (sets number of columns to zero).
///
/// \param map [in] Map, which this object may or may not use as a
/// hint to separate local from nonlocal data. This need not be
/// the same Map as that of the multivector output of
/// globalAssemble().
///
/// Before using this object, you should call setNumColumns() to
/// set the number of columns in the output multivector.
/// Otherwise, the two-argument version of sumIntoGlobalValues()
/// won't actually do anything.
MultiVectorFillerData (const Teuchos::RCP<const map_type>& map) :
map_ (map),
numCols_ (0)
{}
/// \brief Constructor.
///
/// \param map [in] Map, which this object may or may not use as a
/// hint to separate local from nonlocal data. This need not be
/// the same Map as that of the multivector output of
/// globalAssemble().
///
/// \param numColumns [in] The (expected) number of columns in the
/// output multivector. You can always change this later by
/// calling setNumColumns().
///
/// \note If the number of columns given here is not the same as
/// the number of columns in the output multivector, you should
/// call setNumColumns() first before inserting any data.
/// Otherwise, the two-argument version of sumIntoGlobalValues()
/// won't do the right thing.
MultiVectorFillerData (const Teuchos::RCP<const map_type>& map,
const size_t numColumns) :
map_ (map),
numCols_ (numColumns),
sourceIndices_ (numColumns),
sourceValues_ (numColumns)
{}
//! Set the number of columns in the output multivector.
void
setNumColumns (const size_t newNumColumns)
{
const size_t oldNumColumns = getNumColumns();
if (newNumColumns >= oldNumColumns) {
for (size_t j = oldNumColumns; j < newNumColumns; ++j) {
sourceIndices_.push_back (Teuchos::Array<global_ordinal_type> ());
sourceValues_.push_back (Teuchos::Array<scalar_type> ());
}
}
else {
// This may not necessarily deallocate any data, but that's OK.
sourceIndices_.resize (newNumColumns);
sourceValues_.resize (newNumColumns);
}
numCols_ = oldNumColumns;
}
void
sumIntoGlobalValues (const Teuchos::ArrayView<const global_ordinal_type>& rows,
const size_t column,
const Teuchos::ArrayView<const scalar_type>& values)
{
if (column >= getNumColumns()) {
for (size_t j = column; j < getNumColumns(); ++j) {
sourceIndices_.push_back (Teuchos::Array<global_ordinal_type> ());
sourceValues_.push_back (Teuchos::Array<scalar_type> ());
}
}
std::copy (rows.begin(), rows.end(), std::back_inserter (sourceIndices_[column]));
std::copy (values.begin(), values.end(), std::back_inserter (sourceValues_[column]));
}
/// Data for each column are stored contiguously in rows and in
/// values. Thus, rows and values are in rowwise order, even
/// though they may be stored in columnwise order in the
/// multivector.
///
/// Be sure that the number of columns is set correctly before
/// calling this.
void
sumIntoGlobalValues (const Teuchos::ArrayView<const global_ordinal_type>& rows,
const Teuchos::ArrayView<const scalar_type>& values)
{
typedef global_ordinal_type GO;
typedef scalar_type ST;
typedef typename Teuchos::ArrayView<const GO>::const_iterator GoIter;
typedef typename Teuchos::ArrayView<const ST>::const_iterator StIter;
const size_t numColumns = getNumColumns();
GoIter rowIter = rows.begin();
StIter valIter = values.begin();
for (size_t j = 0; j < numColumns; ++j) {
GoIter rowIterNext = rowIter + numColumns;
StIter valIterNext = valIter + numColumns;
std::copy (rowIter, rowIterNext, std::back_inserter (sourceIndices_[j]));
std::copy (valIter, valIterNext, std::back_inserter (sourceValues_[j]));
rowIter = rowIterNext;
valIter = valIterNext;
}
}
/// \brief Locally assemble into X.
///
/// \param X [in/out] Multivector (overlapping source distribution).
///
/// \param f [in/out] Binary function that defines the combine
/// mode. It must define scalar_type operator (const
/// scalar_type&, const scalar_type&). It need not necessarily
/// be commutative or even associative, but it should be
/// thread-safe in case we decide to parallelize local assembly.
/// We call it via X(i,j) = f(X(i,j), Y(i,j)), so write your
/// possibly nonassociative or noncommutative operation
/// accordingly.
///
/// X is distributed by the source Map (with possible overlap) of
/// the Export operation. The source Map of the Export includes
/// both the elements owned by this object's constructor's input
/// Map, and the indices inserted by sumIntoGlobalValues().
///
/// Precondition: The set of global indices in X's Map equals the
/// the union of the entries of nonlocalIndices_[j] for all valid
/// columns j.
///
/// \note You can get the usual ADD combine mode by supplying f =
/// std::plus<scalar_type>.
template<class BinaryFunction>
void
locallyAssemble (MV& X, BinaryFunction& f)
{
using Teuchos::Array;
using Teuchos::ArrayRCP;
using Teuchos::ArrayView;
using Teuchos::RCP;
typedef local_ordinal_type LO;
typedef global_ordinal_type GO;
typedef scalar_type ST;
typedef node_type NT;
RCP<const ::Tpetra::Map<LO, GO, NT> > map = X.getMap();
Array<LO> localIndices;
const size_t numColumns = getNumColumns();
for (size_t j = 0; j < numColumns; ++j) {
const typename Array<const GO>::size_type numIndices = sourceIndices_[j].size();
// Precompute all the local indices before saving to the
// vector. Hopefully this gives us a little bit of locality
// in the global->local conversion, at the expense of a little
// more storage.
if (localIndices.size() < numIndices) {
localIndices.resize (numIndices);
}
ArrayView<LO> localIndicesView = localIndices.view (0, numIndices);
ArrayView<const GO> globalIndicesView = sourceIndices_[j].view (0, numIndices);
for (typename ArrayView<const GO>::size_type i = 0; i < numIndices; ++i) {
localIndices[i] = map->getLocalElement (globalIndicesView[i]);
}
ArrayRCP<ST> X_j = X.getDataNonConst (j);
ArrayView<const ST> localValues = sourceValues_[j].view (0, numIndices);
for (typename ArrayView<const GO>::size_type i = 0; i < numIndices; ++i) {
const LO localInd = localIndices[i];
X_j[localInd] = f (X_j[localInd], localValues[i]);
}
}
}
//! Overload of locallyAssemble() for the usual ADD combine mode.
void
locallyAssemble (MV& X)
{
std::plus<double> f;
locallyAssemble<std::plus<scalar_type> > (X, f);
}
//! Clear the contents of the vector, making it implicitly a vector of zeros.
void clear() {
Teuchos::Array<Teuchos::Array<global_ordinal_type> > newSourceIndices;
Teuchos::Array<Teuchos::Array<scalar_type> > newSourceValues;
// The standard STL idiom for clearing the contents of a vector completely.
std::swap (sourceIndices_, newSourceIndices);
std::swap (sourceValues_, newSourceValues);
}
//! All source indices (local and nonlocal) of the source Map, sorted and unique.
Teuchos::Array<global_ordinal_type>
getSourceIndices () const
{
using Teuchos::Array;
using Teuchos::ArrayView;
using Teuchos::as;
typedef global_ordinal_type GO;
typedef typename Array<GO>::size_type size_type;
Array<GO> allInds (0); // will resize below
const size_t numCols = getNumColumns();
if (numCols == 1) {
// Special case for 1 column avoids copying indices twice.
// Pick the size of the array exactly the first time so there
// are at most two allocations (the constructor may choose to
// allocate).
const size_type numNew = sourceIndices_[0].size();
allInds.resize (allInds.size() + numNew);
std::copy (sourceIndices_[0].begin(), sourceIndices_[0].end(),
allInds.begin());
std::sort (allInds.begin(), allInds.end());
typename Array<GO>::iterator it =
std::unique (allInds.begin(), allInds.end());
const size_type numFinal = as<size_type> (it - allInds.begin());
allInds.resize (numFinal);
}
else {
// Carefully collect all the row indices one column at a time.
// This ensures that the total allocation size in this routine
// is independent of the number of columns. Also, only sort
// the current column's indices. Use merges to ensure sorted
// order in the collected final result.
ArrayView<GO> curIndsView = allInds.view (0, 0); // will grow
Array<GO> newInds;
for (size_t j = 0; j < numCols; ++j) {
const size_type numNew = sourceIndices_[j].size();
if (numNew > newInds.size()) {
newInds.resize (numNew);
}
ArrayView<GO> newIndsView = newInds.view (0, numNew);
std::copy (sourceIndices_[j].begin(), sourceIndices_[j].end(),
newIndsView.begin());
curIndsView = sortAndMergeIn<GO> (allInds, curIndsView, newIndsView);
}
}
return allInds;
}
private:
Teuchos::RCP<const map_type> map_;
size_t numCols_;
Teuchos::Array<Teuchos::Array<global_ordinal_type> > sourceIndices_;
Teuchos::Array<Teuchos::Array<scalar_type> > sourceValues_;
size_t getNumColumns() const { return numCols_; }
};
/// \class MultiVectorFillerData2
/// \brief Second implementation of fill and local assembly for
/// MultiVectorFiller.
/// \author Mark Hoemmen
///
/// \tparam MV Specialization of Tpetra::MultiVector.
template<class MV>
class MultiVectorFillerData2 : public Teuchos::Describable {
public:
typedef typename MV::scalar_type scalar_type;
typedef typename MV::local_ordinal_type local_ordinal_type;
typedef typename MV::global_ordinal_type global_ordinal_type;
typedef typename MV::node_type node_type;
typedef ::Tpetra::Map<local_ordinal_type, global_ordinal_type, node_type> map_type;
/// \brief Default constructor (sets number of columns to zero).
///
/// \param map [in] Map over which to distribute the initial fill.
/// This need not be the same Map as that of the multivector
/// output of globalAssemble().
///
/// Before using this object, you should call setNumColumns() to
/// set the number of columns in the output multivector.
/// Otherwise, the two-argument version of sumIntoGlobalValues()
/// won't actually do anything.
MultiVectorFillerData2 (const Teuchos::RCP<const map_type>& map,
const Teuchos::EVerbosityLevel verbLevel=Teuchos::VERB_DEFAULT,
const Teuchos::RCP<Teuchos::FancyOStream>& out=Teuchos::null) :
map_ (map),
numCols_ (0),
verbLevel_ (verbLevel),
out_ (out)
{}
/// \brief Constructor.
///
/// \param map [in] Map over which to distribute the initial fill.
/// This need not be the same Map as that of the multivector
/// output of globalAssemble(), but the Map must have the
/// same communicator as the multivector output of
/// globalAssemble().
///
/// \param numColumns [in] The (expected) number of columns in the
/// output multivector. You can always change this later by
/// calling setNumColumns().
///
/// \note If the number of columns given here is not the same as
/// the number of columns in the output multivector, you should
/// call setNumColumns() first before inserting any data.
/// Otherwise, the two-argument version of sumIntoGlobalValues()
/// won't do the right thing.
MultiVectorFillerData2 (const Teuchos::RCP<const map_type>& map,
const size_t numColumns,
const Teuchos::EVerbosityLevel verbLevel=Teuchos::VERB_DEFAULT,
const Teuchos::RCP<Teuchos::FancyOStream>& out=Teuchos::null) :
map_ (map),
numCols_ (numColumns),
localVec_ (new MV (map, numColumns)),
#if 0
nonlocalIndices_ (numColumns),
nonlocalValues_ (numColumns),
#endif // 0
verbLevel_ (verbLevel),
out_ (out)
{}
std::string
description() const
{
std::ostringstream oss;
oss << "Tpetra::MultiVectorFillerData2<"
<< Teuchos::TypeNameTraits<MV>::name () << ">";
return oss.str();
}
void
describe (Teuchos::FancyOStream& out,
const Teuchos::EVerbosityLevel verbLevel =
Teuchos::Describable::verbLevel_default) const
{
using std::endl;
using Teuchos::Array;
using Teuchos::ArrayRCP;
using Teuchos::ArrayView;
using Teuchos::RCP;
using Teuchos::VERB_DEFAULT;
using Teuchos::VERB_NONE;
using Teuchos::VERB_LOW;
using Teuchos::VERB_MEDIUM;
using Teuchos::VERB_HIGH;
using Teuchos::VERB_EXTREME;
// Set default verbosity if applicable.
const Teuchos::EVerbosityLevel vl =
(verbLevel == VERB_DEFAULT) ? VERB_LOW : verbLevel;
RCP<const Teuchos::Comm<int> > comm = map_->getComm();
const int myImageID = comm->getRank();
const int numImages = comm->getSize();
if (vl != VERB_NONE) {
// Don't set the tab level unless we're printing something.
Teuchos::OSTab tab (out);
if (myImageID == 0) { // >= VERB_LOW prints description()
out << this->description() << endl;
}
for (int imageCtr = 0; imageCtr < numImages; ++imageCtr) {
if (myImageID == imageCtr) {
if (vl != VERB_LOW) {
// At verbosity > VERB_LOW, each process prints something.
out << "Process " << myImageID << ":" << endl;
Teuchos::OSTab procTab (out);
// >= VERB_MEDIUM: print the local vector length.
out << "local length=" << localVec_->getLocalLength();
if (vl != VERB_MEDIUM) {
// >= VERB_HIGH: print isConstantStride() and getStride()
if (localVec_->isConstantStride()) {
out << ", constant stride=" << localVec_->getStride() << endl;
}
else {
out << ", not constant stride" << endl;
}
if (vl == VERB_EXTREME) {
// VERB_EXTREME: print all the values in the multivector.
out << "Local values:" << endl;
ArrayRCP<ArrayRCP<const scalar_type> > X = localVec_->get2dView();
for (size_t i = 0; i < localVec_->getLocalLength(); ++i) {
for (size_t j = 0; j < localVec_->getNumVectors(); ++j) {
out << X[j][i];
if (j < localVec_->getNumVectors() - 1) {
out << " ";
}
} // for each column
out << endl;
} // for each row
#if 0
out << "Nonlocal indices and values:" << endl;
for (size_t j = 0; j < (size_t)nonlocalIndices_.size(); ++j) {
ArrayView<const global_ordinal_type> inds = nonlocalIndices_[j]();
ArrayView<const scalar_type> vals = nonlocalValues_[j]();
for (typename ArrayView<const global_ordinal_type>::size_type k = 0;
k < inds.size(); ++k) {
out << "X(" << inds[k] << "," << j << ") = " << vals[k] << endl;
}
}
#endif // 0
} // if vl == VERB_EXTREME
} // if (vl != VERB_MEDIUM)
else { // vl == VERB_LOW
out << endl;
}
} // if vl != VERB_LOW
} // if it is my process' turn to print
} // for each process in the communicator
} // if vl != VERB_NONE
}
//! All source indices (local and nonlocal) of the source Map, sorted and unique.
Teuchos::Array<global_ordinal_type>
getSourceIndices (const Teuchos::Comm<int>& comm,
const Teuchos::RCP<Teuchos::FancyOStream>& out = Teuchos::null,
const bool debug = false) const
{
using Teuchos::Array;
using Teuchos::ArrayView;
using Teuchos::RCP;
using Teuchos::rcp;
using Tpetra::global_size_t;
typedef global_ordinal_type GO;
const char prefix[] = "Tpetra::MultiVectorFiller::getSourceIndices: ";
if (debug && ! out.is_null ()) {
std::ostringstream os;
os << "Proc " << comm.getRank () << ": getSourceIndices" << std::endl;
*out << os.str ();
}
// Get the nonlocal row indices, sorted and made unique.
// It's fair to assume that these are not contiguous.
Array<GO> nonlocalIndices = getSortedUniqueNonlocalIndices (comm, out, debug);
// Get the local row indices, not necessarily sorted or unique.
ArrayView<const GO> localIndices = getLocalIndices ();
// Copy the local indices into the full indices array, and sort
// them there. We'll merge in the nonlocal indices below. This
// can be more efficient than just sorting all the indices, if
// there are a lot of nonlocal indices.
Array<GO> indices (localIndices.size () + nonlocalIndices.size ());
ArrayView<GO> localIndView = indices.view (0, localIndices.size ());
TEUCHOS_TEST_FOR_EXCEPTION
(localIndView.size () > indices.size (), std::logic_error,
prefix << "localIndView.size() = " << localIndView.size ()
<< " > indices.size() = " << indices.size () << ".");
TEUCHOS_TEST_FOR_EXCEPTION
(localIndView.size () != localIndices.size (), std::logic_error,
prefix << "localIndView.size() = " << localIndView.size ()
<< " != localIndices.size() = " << localIndices.size () << ".");
std::copy (localIndices.begin (), localIndices.end (), localIndView.begin ());
std::sort (localIndView.begin (), localIndView.end ());
if (debug && ! out.is_null ()) {
std::ostringstream os;
os << "Proc " << comm.getRank () << ": Right after copying and sorting" << std::endl;
*out << os.str ();
}
// Merge the local and nonlocal indices.
if (nonlocalIndices.size () > 0) {
ArrayView<GO> nonlclIndView =
indices.view (localIndices.size (), nonlocalIndices.size ());
// We need a view of the output array, because
// std::inplace_merge needs all its iterator inputs to have
// the same type. Debug mode builds are pickier than release
// mode builds, because the iterators in a debug mode build
// are of a different type that does run-time checking (they
// aren't just raw pointers).
ArrayView<GO> indView = indices.view (0, indices.size ());
if (debug && ! out.is_null ()) {
std::ostringstream os;
os << "Right before std::copy" << std::endl;
*out << os.str ();
}
std::copy (nonlocalIndices.begin (),
nonlocalIndices.end (),
nonlclIndView.begin ());
if (debug && ! out.is_null ()) {
std::ostringstream os;
os << "Proc " << comm.getRank () << ": Right before std::inplace_merge"
<< std::endl;
*out << os.str ();
}
std::inplace_merge (indView.begin (),
indView.begin () + localIndices.size (),
indView.end ());
}
if (debug && ! out.is_null ()) {
std::ostringstream os;
os << "Proc " << comm.getRank () << ": Done with getSourceIndices"
<< std::endl;
*out << os.str ();
}
return indices;
}
/// \brief Set the number of columns in the output multivector.
///
/// \param newNumColumns [in] The new number of columns in the
/// multivector. Zero is allowed; it means "clear local
/// storage."
///
/// Setting the number of columns to zero effectively clears out
/// all local storage, but may not necessarily deallocate nonlocal
/// storage. Call clear() to clear out all nonlocal storage.
void
setNumColumns (const size_t newNumColumns)
{
using Teuchos::Array;
using Teuchos::Range1D;
using Teuchos::RCP;
const size_t oldNumColumns = numCols_;
if (newNumColumns == oldNumColumns) {
return; // No side effects if no change.
}
RCP<MV> newLclVec;
if (newNumColumns > oldNumColumns) {
newLclVec = rcp (new MV (map_, newNumColumns));
// Assign the contents of the old local multivector to the
// first oldNumColumns columns of the new local multivector,
// then get rid of the old local multivector.
RCP<MV> newLclVecView =
newLclVec->subViewNonConst (Range1D (0, oldNumColumns-1));
*newLclVecView = *localVec_;
}
else {
if (newNumColumns == 0) {
// Tpetra::MultiVector doesn't let you construct a
// multivector with zero columns.
newLclVec = Teuchos::null;
}
else {
newLclVec = localVec_->subViewNonConst (Range1D (0, newNumColumns-1));
}
}
// Leave most side effects until the end, for exception safety.
localVec_ = newLclVec;
numCols_ = newNumColumns;
}
/// \brief Set entry (rows[i],columnIndex) to values[i], for all i.
///
/// \param rows [in] Which rows of the MultiVector to modify.
/// \param columnIndex [in] Which column of the MultiVector to modify.
/// \param values [in] The new values.
void
sumIntoGlobalValues (const Teuchos::ArrayView<const global_ordinal_type>& rows,
const size_t columnIndex,
const Teuchos::ArrayView<const scalar_type>& values)
{
using Teuchos::ArrayView;
typedef local_ordinal_type LO;
typedef global_ordinal_type GO;
typedef scalar_type ST;
typedef decltype (rows.size ()) size_type;
const char prefix[] = "Tpetra::MultiVectorFiller::sumIntoGlobalValues: ";
if (map_.is_null ()) {
return; // the calling process is not participating
}
const size_type numEnt = rows.size ();
TEUCHOS_TEST_FOR_EXCEPTION
(numEnt != values.size (), std::invalid_argument, prefix
<< "rows.size() = " << numEnt << " != values.size() = "
<< values.size () << ".");
// FIXME (31 Aug 2015) Don't do this.
if (columnIndex >= getNumColumns()) {
// Automatically expand the number of columns. This
// implicitly ensures that localVec_ is not null.
setNumColumns (columnIndex + 1);
}
// It would be a lot more efficient for users to get the Kokkos
// view outside of their fill loop, and fill into it directly.
auto X_j = localVec_->getVector (columnIndex);
auto X_j_2d = X_j->template getLocalView<typename MV::dual_view_type::t_host::memory_space> ();
auto X_j_1d = Kokkos::subview (X_j_2d, Kokkos::ALL (), 0);
const map_type& theMap = *map_;
for (size_type k = 0; k < numEnt; ++k) {
const ST val = values[k];
const GO gblRowInd = rows[k];
const LO lclRowInd = theMap.getLocalElement (gblRowInd);
if (lclRowInd == Teuchos::OrdinalTraits<LO>::invalid ()) {
// The row doesn't belong to the calling process, so stuff
// its data in nonlocals_.
auto& innerMap = nonlocals_[columnIndex];
auto innerIter = innerMap.find (gblRowInd);
if (innerIter == innerMap.end ()) {
innerMap.insert (std::make_pair (gblRowInd, values[k]));
} else {
innerIter->second += val;
}
}
else {
// FIXME (mfh 27 Feb 2012) Allow different combine modes.
// The current combine mode just adds to the current value
// at that location.
X_j_1d[lclRowInd] += val;
}
}
}
/// \brief Set entry (rows[i],j) to values[i], for all i and j.
///
/// Data for each column are stored contiguously in rows and in
/// values. Thus, rows and values are in rowwise order, even
/// though they may be stored in columnwise order in the
/// multivector.
///
/// Be sure that the number of columns is set correctly before
/// calling this.
void
sumIntoGlobalValues (const Teuchos::ArrayView<const global_ordinal_type>& rows,
const Teuchos::ArrayView<const scalar_type>& values)
{
using Teuchos::ArrayView;
typedef typename ArrayView<const global_ordinal_type>::size_type size_type;
const size_t numCols = getNumColumns();
for (size_t j = 0; j < numCols; ++j) {
const size_type offset = numCols*j;
const size_type len = numCols;
this->sumIntoGlobalValues (rows.view (offset, len), j, values.view (offset, len));
}
}
/// \brief Locally assemble into X, with user-specified combine mode.
///
/// \param X [in/out] Multivector (overlapping source distribution).
///
/// \param f [in/out] Binary function that defines the combine
/// mode. It must define scalar_type operator (const
/// scalar_type&, const scalar_type&). It need not necessarily
/// be commutative or even associative, but it should be
/// thread-safe in case we decide to parallelize local assembly.
/// We call it via X(i,j) = f(X(i,j), Y(i,j)), so write your
/// possibly nonassociative or noncommutative operation
/// accordingly.
///
/// X is distributed by the source Map (with possible overlap) of
/// the Export operation. The source Map of the Export includes
/// both the elements owned by this object's constructor's input
/// Map, and the indices inserted by sumIntoGlobalValues().
///
/// Precondition: The set of global indices in X's Map equals the
/// union of the global indices in map_ and (the union of the
/// entries of nonlocalIndices_[j] for all valid columns j).
///
/// \note You can get the usual Tpetra::ADD combine mode by
/// supplying f = std::plus<scalar_type>.
template<class BinaryFunction>
void
locallyAssemble (MV& X, BinaryFunction& f)
{
typedef scalar_type ST;
typedef local_ordinal_type LO;
typedef global_ordinal_type GO;
typedef typename MV::dual_view_type::t_host::memory_space host_memory_space;
if (X.getMap ().is_null ()) {
return; // this process is not participating
}
const map_type& srcMap = * (X.getMap ());
for (size_t j = 0; j < X.getNumVectors (); ++j) {
auto X_j = X.getVector (j);
auto X_j_2d = X_j->template getLocalView<host_memory_space> ();
auto X_j_1d = Kokkos::subview (X_j_2d, Kokkos::ALL (), 0);
// First, assemble in the local components from localVec_.
if (! localVec_.is_null () && ! localVec_->getMap ().is_null ()
&& j < localVec_->getNumVectors ()) {
auto lcl_j = localVec_->getVector (j);
auto lcl_j_2d = lcl_j->template getLocalView<host_memory_space> ();
auto lcl_j_1d = Kokkos::subview (lcl_j_2d, Kokkos::ALL (), 0);
// Iterate over all rows of localVec_. i_lcl is a local
// index with respect to localVec_'s Map, which may differ
// from X's Map.
const map_type& lclMap = * (localVec_->getMap ());
const LO lclNumRows = static_cast<LO> (lcl_j->getLocalLength ());
for (LO i_lcl = 0; i_lcl < lclNumRows; ++i_lcl) {
const GO i_gbl = lclMap.getGlobalElement (i_lcl);
const LO i_X = srcMap.getLocalElement (i_gbl);
X_j_1d(i_X) = f (X_j_1d(i_X), lcl_j_1d(i_lcl));
}
}
// Second, assemble in the nonlocal components.
auto outerIter = nonlocals_.find (j);
if (outerIter != nonlocals_.end ()) {
auto beg = outerIter->second.begin ();
auto end = outerIter->second.end ();
for (auto innerIter = beg; innerIter != end; ++innerIter) {
const GO gblRowInd = innerIter->first;
const LO lclRowInd = srcMap.getLocalElement (gblRowInd);
if (lclRowInd != Teuchos::OrdinalTraits<LO>::invalid ()) {
const ST val = innerIter->second;
X_j_1d(lclRowInd) = f (X_j_1d(lclRowInd), val);
}
}
}
}
}
/// \brief Do the "local" (not MPI) part of assembly
///
/// Call this method for the usual Tpetra::ADD combine mode. If
/// you want a different combine mode, call the overload that
/// takes two arguments, one of which is a binary function.
void
locallyAssemble (MV& X)
{
std::plus<double> f;
locallyAssemble<std::plus<scalar_type> > (X, f);
}
/// \brief Clear the contents of the multivector.
///
/// This fills the vector with zeros, and also removes nonlocal
/// data. It does <i>not</i> deallocate all storage. For that,
/// you need to set the number of columns to zero.
void clear ()
{
std::map<size_t, std::map<global_ordinal_type, scalar_type> > newNonlcls;
// The standard STL idiom for clearing the contents of a
// container completely. Setting the size to zero may not
// necessarily deallocate data.
std::swap (nonlocals_, newNonlcls);
// Don't actually deallocate the multivector of local entries.
// Just fill it with zero. This is because the caller hasn't
// reset the number of columns.
if (! localVec_.is_null ()) {
localVec_->putScalar (Teuchos::ScalarTraits<scalar_type>::zero());
}
}
private:
//! Map that tells us which entries are locally owned.
Teuchos::RCP<const map_type> map_;
//! The number of columns in the (output) multivector.
size_t numCols_;
//! Multivector of locally stored (i.e., owned by \c map_) entries.
Teuchos::RCP<MV> localVec_;
//! Map from column index to (map from row index to value).
std::map<size_t, std::map<global_ordinal_type, scalar_type> > nonlocals_;
//! Verbosity level of this object (mainly used for debugging output).
Teuchos::EVerbosityLevel verbLevel_;
//! Output stream (mainly used for debugging output).
Teuchos::RCP<Teuchos::FancyOStream> out_;
//! The number of columns in the (output) multivector.
size_t getNumColumns() const { return numCols_; }
//! The locally owned row indices, not necessarily sorted or unique.
Teuchos::ArrayView<const global_ordinal_type>
getLocalIndices() const
{
return map_->getNodeElementList ();
}
//! The inserted nonlocal row indices, sorted and made unique.
Teuchos::Array<global_ordinal_type>
getSortedUniqueNonlocalIndices (const Teuchos::Comm<int>& comm,
const Teuchos::RCP<Teuchos::FancyOStream>& out = Teuchos::null,
const bool debug = false) const
{
using Teuchos::Array;
using Teuchos::ArrayView;
using Teuchos::as;
typedef global_ordinal_type GO;
if (debug && ! out.is_null ()) {
std::ostringstream os;
os << "Proc " << comm.getRank () << ": getSortedUniqueNonlocalIndices"
<< std::endl;
*out << os.str ();
}
// FIXME (mfh 30 Aug 2015) The std::set algorithm is harder to
// thread-parallelize, but it should be easier to make the new
// test pass with this.
std::set<GO> indsOut;
const size_t numCols = getNumColumns ();
for (size_t j = 0; j < numCols; ++j) {
auto outerIter = nonlocals_.find (j);
if (outerIter != nonlocals_.end ()) {
auto beg = outerIter->second.begin ();
auto end = outerIter->second.end ();
for (auto innerIter = beg; innerIter != end; ++innerIter) {
// *innerIter: (global row index, value) pair.
indsOut.insert (innerIter->first);
}
}
}
if (debug && ! out.is_null ()) {
std::ostringstream os;
os << "Proc " << comm.getRank () << ": Made nonlocals set" << std::endl;
*out << os.str ();
}
Array<GO> allNonlocals (indsOut.begin (), indsOut.end ());
if (debug && ! out.is_null ()) {
std::ostringstream os;
os << "Proc " << comm.getRank () << ": Done with "
"getSortedUniqueNonlocalIndices" << std::endl;
*out << os.str ();
}
return allNonlocals;
}
};
} // namespace Details
} // namespace Tpetra
namespace Tpetra {
/// \class MultiVectorFiller
/// \brief Adds nonlocal sum-into functionality to Tpetra::MultiVector.
/// \author Mark Hoemmen
///
/// MultiVector does not allow modifications to rows not owned by
/// the calling process. This makes the implementation of
/// MultiVector simple, fast, and local, but it complicates
/// operations like assembly of the right-hand side in the finite
/// element method. CrsMatrix already supports insertion into
/// nonowned rows, so that makes assembly not consistent for sparse
/// matrices and vectors. MultiVectorFiller remedies this by
/// specializing for the case of filling a (multi)vector. It
/// provides a constructor and sumIntoGlobalValues() methods that
/// look just like those of MultiVector, so you can swap it in at
/// the assembly stage. Then, you can call globalAssemble() to turn
/// the MultiVectorFiller into a standard MultiVector.
///
/// The globalAssemble() method will redistribute data if necessary.
/// You can force it to use the Map provided to the constructor (or
/// the Map provided to the last call to globalAssemble(), which is
/// a common use case for doing nonlinear solves where the sparse
/// matrix structure doesn't change).
///
/// \tparam MV Specialization of Tpetra::MultiVector.
template<class MV>
class MultiVectorFiller {
public:
typedef typename MV::scalar_type scalar_type;
typedef typename MV::local_ordinal_type local_ordinal_type;
typedef typename MV::global_ordinal_type global_ordinal_type;
typedef typename MV::node_type node_type;
typedef ::Tpetra::Map<local_ordinal_type, global_ordinal_type, node_type> map_type;
/// \brief Constructor.
///
/// The constructor takes the same arguments as MV's constructor.
/// We did this on purpose, so that you can construct
/// MultiVectorFiller as you would a standard MV.
///
/// \param map [in] A Map with the same communicator and Kokkos
/// Node as the output multivector of globalAssemble(). This
/// need not be the same Map as that output multivector's Map.
///
/// \param numCols [in] Expected number of columns in the output
/// multivector of globalAssemble().
///
/// \note If the number of columns given here is not the same as
/// the number of columns in the output multivector, the
/// two-argument version of sumIntoGlobalValues() won't do
/// the right thing. Use the three-argument version of that
/// method if you don't know how many columns there will be in
/// advance.
///
/// \note Not providing the output multivector in the constructor
/// gives globalAssemble() more flexibility. For example, its
/// output multivector may have any distribution with the same
/// global number of rows. Furthermore, decoupling insertion
/// from the output multivector lets this object store
/// preassembled data in whatever format it likes. It doesn't
/// have to insert directly into the output multivector until
/// assembly time. (This may improve performance by amortizing
/// the cost of global->local index conversions, for example.)
MultiVectorFiller (const Teuchos::RCP<const map_type>& map,
const size_t numCols);
/// \brief Assemble all the data (local and nonlocal) into X_out.
///
/// You can call this method multiple times with different
/// multivector output arguments. If those arguments have the
/// same Map, this method will attempt to reuse the Export object
/// each time. It will only reuse if the new target Map is the
/// same as (in the sense of Map::isSameAs()) the previous target
/// Map, unless you force reuse with the second argument (that
/// saves a few global reductions for the check).
///
/// \param X_out [in/out] MultiVector with a nonoverlapping Map.
/// That Map need not be the same as the one with which this
/// object was created.
///
/// \param forceReuseMap [in] If true, assume that X_out has the
/// same Map (in the sense of Map::isSameAs()) as the target Map
/// in the previous call to this method. If this method was not
/// called before, then assume that X_out has the same Map as
/// the argument to the constructor of this object.
void
globalAssemble (MV& X_out, const bool forceReuseMap = false);
//! Clear contents, in preparation for another fill cycle.
void clear () {
data_.clear ();
}
void
describe (Teuchos::FancyOStream& out,
const Teuchos::EVerbosityLevel verbLevel=Teuchos::Describable::verbLevel_default) const
{
data_.describe (out, verbLevel);
}
/// \brief Sum data into the multivector.
///
/// \param rows [in] Array of global rows for which to insert
/// values. Must have the same length as values.
///
/// \param column [in] Index of the column in which to insert.
///
/// \param values [in] Array of values to insert. Must have the
/// same length as rows. rows[i] is the row in which values[i]
/// is to be inserted.
void
sumIntoGlobalValues (Teuchos::ArrayView<const global_ordinal_type> rows,
size_t column,
Teuchos::ArrayView<const scalar_type> values)
{
data_.sumIntoGlobalValues (rows, column, values);
}
/// \brief Sum data into the multivector.
///
/// In rows and values, the data for each column are stored
/// contiguously. Thus, each array is really a matrix in rowwise
/// order. (The multivector may use columnwise order internally.)
///
/// Be sure that the number of columns is set correctly before
/// calling this.
///
/// \param rows [in] Array of global rows for which to insert
/// values. Must have the same length as values.
///
/// \param values [in] Array of values to insert. Must have the
/// same length as rows. rows[i] is the row in which values[i]
/// is to be inserted.
void
sumIntoGlobalValues (Teuchos::ArrayView<const global_ordinal_type> rows,
Teuchos::ArrayView<const scalar_type> values)
{
data_.sumIntoGlobalValues (rows, values);
}
private:
//! Map with which this object was created ("ctor" == "constructor").
Teuchos::RCP<const map_type> ctorMap_;
/// \brief Source Map of the last call to globalAssemble().
///
/// A possibly overlapping Map that describes the distribution of
/// input data, and is the source of the Export.
Teuchos::RCP<const map_type> sourceMap_;
/// \brief The target Map of the last call to globalAssemble().
///
/// A nonoverlapping Map which is the target of the Export, and
/// describes the distribution of the output multivector of
/// globalAssemble().
Teuchos::RCP<const map_type> targetMap_;
/// \brief The source MV of the Export operation in globalAssemble().
///
/// The globalAssemble() method uses this multivector as the
/// source of the Export operation. The Export redistributes the
/// data from a possibly overlapping distribution (reflecting how
/// elements were inserted) to a nonoverlapping distribution (that
/// of the output multivector \c X_out of globalAssemble()). This
/// is the simplest way to implement redistribution.
///
/// We avoid resizing and reallocating \c sourceVec_ by using a
/// contiguous subview as the source of the Export, if \c X_out
/// has fewer columns than \c sourceVec_.
Teuchos::RCP<MV> sourceVec_;
/// \brief Storage for inserted indices and values.
///
/// We separate this to facilitate experimentation with different
/// storage formats.
Tpetra::Details::MultiVectorFillerData2<MV> data_;
typedef Tpetra::Export<local_ordinal_type, global_ordinal_type, node_type> export_type;
Teuchos::RCP<export_type> exporter_;
/// \brief Assemble the local data into \c X_in.
///
/// This method is called by globalAssemble(), in which \c X_in
/// is the multivector with the (possibly overlapping) source
/// distribution.
void locallyAssemble (MV& X_in) {
data_.locallyAssemble (X_in);
}
//! All source indices (local and nonlocal) of the source Map.
Teuchos::Array<global_ordinal_type>
getSourceIndices (const Teuchos::Comm<int>& comm,
const Teuchos::RCP<Teuchos::FancyOStream>& out = Teuchos::null,
const bool debug = false) const
{
return data_.getSourceIndices (comm, out, debug);
}
/// \brief Compute the source Map (for the Export) from the source indices.
///
/// indexBase, comm, and node are the same as the input arguments
/// of the Map constructors.
///
/// \note This is a collective operation.
///
/// \return The (possibly overlapping) source Map.
Teuchos::RCP<const map_type>
computeSourceMap (const global_ordinal_type indexBase,
const Teuchos::RCP<const Teuchos::Comm<int> >& comm,
const Teuchos::RCP<Teuchos::FancyOStream>& out = Teuchos::null,
const bool debug = false);
};
template<class MV>
MultiVectorFiller<MV>::MultiVectorFiller (const Teuchos::RCP<const typename MultiVectorFiller<MV>::map_type>& map, const size_t numCols)
: ctorMap_ (map),
sourceMap_ (Teuchos::null),
targetMap_ (Teuchos::null),
data_ (map, numCols),
exporter_ (Teuchos::null)
{}
template<class MV>
Teuchos::RCP<const typename MultiVectorFiller<MV>::map_type>
MultiVectorFiller<MV>::
computeSourceMap (const global_ordinal_type indexBase,
const Teuchos::RCP<const Teuchos::Comm<int> >& comm,
const Teuchos::RCP<Teuchos::FancyOStream>& out,
const bool debug)
{
using Teuchos::Array;
using Teuchos::ArrayView;
using Teuchos::rcp;
typedef global_ordinal_type GO;
if (debug && ! out.is_null ()) {
out->pushTab ();
std::ostringstream os;
const int myRank = comm->getRank ();
os << "Proc " << myRank << ": computeSourceMap" << std::endl;
*out << os.str ();
}
Array<GO> indices = getSourceIndices (*comm, out, debug);
if (debug && ! out.is_null ()) {
std::ostringstream os;
const int myRank = comm->getRank ();
os << "Proc " << myRank << ": computeSourceMap: About to create Map"
<< std::endl;
*out << os.str ();
out->popTab ();
}
// Passing "invalid" for the numGlobalElements argument of the Map
// constructor tells the Map to compute the global number of
// elements itself.
typedef Tpetra::global_size_t GST;
const GST INV = Teuchos::OrdinalTraits<GST>::invalid ();
return rcp (new map_type (INV, indices, indexBase, comm));
}
template<class MV>
void
MultiVectorFiller<MV>::
globalAssemble (MV& X_out, const bool forceReuseMap)
{
using Teuchos::ArrayView;
using Teuchos::Array;
using Teuchos::Range1D;
using Teuchos::RCP;
using Teuchos::rcp;
RCP<Teuchos::FancyOStream> outPtr;
const bool debug = false;
if (debug) {
outPtr = Teuchos::getFancyOStream (Teuchos::rcpFromRef (std::cerr));
outPtr->pushTab ();
}
const size_t numVecs = X_out.getNumVectors ();
if (numVecs == 0) {
// Nothing to do! Of course, this does not check for whether
// X_out has the right number of rows. That's OK, though.
// Compare to the definition of the BLAS' _AXPY for an input
// vector containing NaNs, but multiplied by alpha=0.
return;
}
//
// Get the target Map of the Export. If X_out's Map is the same
// as the target Map from last time, then we may be able to
// recycle the Export from last time, if the source Map is also
// the same.
//
RCP<const map_type> targetMap;
bool assumeSameTargetMap = false;
if (targetMap_.is_null()) {
targetMap_ = X_out.getMap();
targetMap = targetMap_;
assumeSameTargetMap = false;
}
else {
if (forceReuseMap) {
targetMap = targetMap_;
assumeSameTargetMap = true;
}
else {
// If X_out's Map is the same as targetMap_, we may be able to
// reuse the Export. Constructing the Export may be more
// expensive than calling isSameAs() (which requires just a
// few reductions and reading through the lists of owned
// global indices), so it's worth checking.
if (targetMap_->isSameAs (*(X_out.getMap()))) {
assumeSameTargetMap = true;
targetMap = targetMap_;
}
}
}
if (debug && ! outPtr.is_null ()) {
std::ostringstream os;
const Teuchos::Comm<int>& comm = * (X_out.getMap ()->getComm ());
const int myRank = comm.getRank ();
os << "Proc " << myRank << ": Right before getting source Map" << std::endl;
*outPtr << os.str ();
}
//
// Get the source Map of the Export. If the source Map of the
// Export is the same as last time, then we may be able to recycle
// the Export from last time, if the target Map is also the same.
//
RCP<const map_type> sourceMap;
bool computedSourceMap = false;
{
if (forceReuseMap && ! sourceMap_.is_null()) {
sourceMap = sourceMap_;
}
else {
sourceMap = computeSourceMap (ctorMap_->getIndexBase (),
ctorMap_->getComm (),
outPtr, debug);
computedSourceMap = true;
}
}
if (computedSourceMap) {
sourceMap_ = sourceMap;
}
if (debug && ! outPtr.is_null ()) {
std::ostringstream os;
const Teuchos::Comm<int>& comm = * (X_out.getMap ()->getComm ());
const int myRank = comm.getRank ();
os << "Proc " << myRank << ": Right before computing Export" << std::endl;
*outPtr << os.str ();
}
//
// Now that we have the source and target Maps of the Export, we
// can check whether we can recycle the Export from last time.
//
const bool mustComputeExport =
(exporter_.is_null() || (assumeSameTargetMap && ! computedSourceMap));
if (mustComputeExport) {
exporter_ = rcp (new export_type (sourceMap_, targetMap_));
}
if (debug && ! outPtr.is_null ()) {
std::ostringstream os;
const Teuchos::Comm<int>& comm = * (X_out.getMap ()->getComm ());
const int myRank = comm.getRank ();
os << "Proc " << myRank << ": Right after computing Export" << std::endl;
*outPtr << os.str ();
}
// Source multivector for the Export.
RCP<MV> X_in;
const bool mustReallocateVec = sourceVec_.is_null() ||
sourceVec_->getNumVectors() < numVecs || ! assumeSameTargetMap;
if (mustReallocateVec) {
// Reallocating nonlocalVec_ ensures that it has the right Map.
sourceVec_ = rcp (new MV (sourceMap_, numVecs));
X_in = sourceVec_;
} else {
if (sourceVec_->getNumVectors() == numVecs) {
X_in = sourceVec_;
} else { // sourceVec_ has more vectors than needed.
X_in = sourceVec_->subViewNonConst (Range1D (0, numVecs-1));
}
}
if (debug && ! outPtr.is_null ()) {
std::ostringstream os;
const Teuchos::Comm<int>& comm = * (X_out.getMap ()->getComm ());
const int myRank = comm.getRank ();
os << "Proc " << myRank << ": Right before locallyAssemble" << std::endl;
*outPtr << os.str ();
}
// "Locally assemble" the data into X_in by summing together
// entries with the same indices.
locallyAssemble (*X_in);
if (debug && ! outPtr.is_null ()) {
std::ostringstream os;
const Teuchos::Comm<int>& comm = * (X_out.getMap ()->getComm ());
const int myRank = comm.getRank ();
os << "Proc " << myRank << ": Right after locallyAssemble" << std::endl;
*outPtr << os.str ();
}
// Do the Export.
const Tpetra::CombineMode combineMode = Tpetra::ADD;
X_out.doExport (*X_in, *exporter_, combineMode);
if (debug && ! outPtr.is_null ()) {
std::ostringstream os;
const Teuchos::Comm<int>& comm = * (X_out.getMap ()->getComm ());
const int myRank = comm.getRank ();
os << "Proc " << myRank << ": Right after Export" << std::endl;
*outPtr << os.str ();
}
// Clean out the locally owned data for next time.
X_in->putScalar (Teuchos::ScalarTraits<scalar_type>::zero ());
// FIXME (mfh 27 Aug 2015) Clean out the remote data for next
// time. See Bug 6398.
if (debug && ! outPtr.is_null ()) {
std::ostringstream os;
const Teuchos::Comm<int>& comm = * (X_out.getMap ()->getComm ());
const int myRank = comm.getRank ();
os << "Proc " << myRank << ": Done with globalAssemble" << std::endl;
*outPtr << os.str ();
outPtr->pushTab ();
}
}
namespace Test {
/// \class MultiVectorFillerTester
/// \brief Tests for MultiVectorFiller
/// \author Mark Hoemmen
///
/// \tparam MV A specialization of Tpetra::MultiVector.
template<class MV>
class MultiVectorFillerTester {
public:
typedef typename MV::scalar_type scalar_type;
typedef typename MV::local_ordinal_type local_ordinal_type;
typedef typename MV::global_ordinal_type global_ordinal_type;
typedef typename MV::node_type node_type;
typedef ::Tpetra::Map<local_ordinal_type, global_ordinal_type, node_type> map_type;
/// \brief Test global assembly when constructor Map = target Map.
///
/// Constructor Map = target Map is a common case for finite
/// element assembly. This method current only tests the
/// version of MultiVectorFiller::sumIntoGlobalValues() that
/// works on one column at a time.
///
/// If any test fails, this method throws an exception.
static void
testSameMap (const Teuchos::RCP<const map_type>& targetMap,
const global_ordinal_type eltSize, // Must be odd
const size_t numCols,
const Teuchos::RCP<Teuchos::FancyOStream>& outStream=Teuchos::null,
const Teuchos::EVerbosityLevel verbosityLevel=Teuchos::VERB_DEFAULT)
{
using Teuchos::Array;
using Teuchos::ArrayRCP;
using Teuchos::ArrayView;
using Teuchos::as;
using Teuchos::Comm;
using Teuchos::FancyOStream;
using Teuchos::getFancyOStream;
using Teuchos::oblackholestream;
using Teuchos::ptr;
using Teuchos::RCP;
using Teuchos::rcp;
using Teuchos::rcpFromRef;
using Teuchos::REDUCE_SUM;
using Teuchos::reduceAll;
using std::cerr;
using std::endl;
typedef local_ordinal_type LO;
typedef global_ordinal_type GO;
typedef scalar_type ST;
typedef Teuchos::ScalarTraits<ST> STS;
TEUCHOS_TEST_FOR_EXCEPTION(eltSize % 2 == 0, std::invalid_argument,
"Element size (eltSize) argument must be odd.");
TEUCHOS_TEST_FOR_EXCEPTION(numCols == 0, std::invalid_argument,
"Number of columns (numCols) argument must be nonzero.");
// Default behavior is to print nothing out.
RCP<FancyOStream> out = outStream.is_null() ?
getFancyOStream (rcp (new oblackholestream)) : outStream;
const Teuchos::EVerbosityLevel verbLevel =
(verbosityLevel == Teuchos::VERB_DEFAULT) ?
Teuchos::VERB_NONE : verbosityLevel;
//RCP<MV> X = rcp (new MV (targetMap, numCols));
const GO indexBase = targetMap->getIndexBase();
Array<GO> rows (eltSize);
Array<ST> values (eltSize);
std::fill (values.begin(), values.end(), STS::one());
// Make this a pointer so we can free its contents, in case
// those contents depend on the input to globalAssemble().
RCP<MultiVectorFiller<MV> > filler =
rcp (new MultiVectorFiller<MV> (targetMap, numCols));
TEUCHOS_TEST_FOR_EXCEPTION(! targetMap->isContiguous(),
std::invalid_argument, "MultiVectorFiller test currently only works "
"for contiguous Maps.");
const GO minGlobalIndex = targetMap->getMinGlobalIndex();
const GO maxGlobalIndex = targetMap->getMaxGlobalIndex();
const GO minAllGlobalIndex = targetMap->getMinAllGlobalIndex();
const GO maxAllGlobalIndex = targetMap->getMaxAllGlobalIndex();
for (size_t j = 0; j < numCols; ++j) {
for (GO i = minGlobalIndex; i <= maxGlobalIndex; ++i) {
// Overlap over processes, without running out of bounds.
const GO start = std::max (i - eltSize/2, minAllGlobalIndex);
const GO end = std::min (i + eltSize/2, maxAllGlobalIndex);
const GO len = end - start + 1;
TEUCHOS_TEST_FOR_EXCEPTION(len > eltSize, std::logic_error,
"At start,end = " << start << "," << end << ", len = " << len
<< " > eltSize = " << eltSize << ".");
for (GO k = 0; k < len; ++k) {
rows[k] = start + k;
}
if (verbLevel == Teuchos::VERB_EXTREME) {
*out << "Inserting: "
<< Teuchos::toString (rows.view(0,len)) << ", "
<< Teuchos::toString (values.view(0, len)) << std::endl;
}
filler->sumIntoGlobalValues (rows.view(0, len), j, values.view(0, len));
}
}
if (verbLevel == Teuchos::VERB_EXTREME) {
*out << "Filler:" << std::endl;
filler->describe (*out, verbLevel);
*out << std::endl;
}
MV X_out (targetMap, numCols);
filler->globalAssemble (X_out);
filler = Teuchos::null;
if (verbLevel == Teuchos::VERB_EXTREME) {
*out << "X_out:" << std::endl;
X_out.describe (*out, verbLevel);
*out << std::endl;
}
// Create multivector for comparison.
MV X_expected (targetMap, numCols);
const scalar_type two = STS::one() + STS::one();
for (size_t j = 0; j < numCols; ++j) {
ArrayRCP<ST> X_j = X_expected.getDataNonConst (j);
// Each entry of the column should have the value eltSize,
// except for the first and last few entries in the whole
// column (globally, not locally).
for (GO i = minGlobalIndex; i <= maxGlobalIndex; ++i) {
const LO localIndex = targetMap->getLocalElement (i);
TEUCHOS_TEST_FOR_EXCEPTION(i == Teuchos::OrdinalTraits<LO>::invalid(),
std::logic_error, "Global index " << i << " is not in the "
"multivector's Map.");
if (i <= minAllGlobalIndex + eltSize/2) {
X_j[localIndex] = two + as<ST>(i) - as<ST>(indexBase);
}
else if (i >= maxAllGlobalIndex - eltSize/2) {
X_j[localIndex] = two + as<ST>(maxAllGlobalIndex) - as<ST>(i);
}
else {
X_j[localIndex] = as<ST>(eltSize);
}
} // for each global index which my process owns
} // for each column of the multivector
if (verbLevel == Teuchos::VERB_EXTREME) {
*out << "X_expected:" << std::endl;
X_expected.describe (*out, verbLevel);
*out << std::endl;
}
Array<GO> errorLocations;
for (size_t j = 0; j < numCols; ++j) {
ArrayRCP<const ST> X_out_j = X_out.getData (j);
ArrayRCP<const ST> X_expected_j = X_expected.getData (j);
// Each entry of the column should have the value eltSize,
// except for the first and last few entries in the whole
// column (globally, not locally).
for (GO i = minGlobalIndex; i <= maxGlobalIndex; ++i) {
const LO localIndex = targetMap->getLocalElement (i);
TEUCHOS_TEST_FOR_EXCEPTION(i == Teuchos::OrdinalTraits<LO>::invalid(),
std::logic_error, "Global index " << i << " is not in the "
"multivector's Map.");
// The floating-point additions should be exact in this
// case, except for very large values of eltSize.
if (X_out_j[localIndex] != X_expected_j[localIndex]) {
errorLocations.push_back (i);
}
} // for each global index which my process owns
const typename Array<GO>::size_type localNumErrors = errorLocations.size();
typename Array<GO>::size_type globalNumErrors = 0;
RCP<const Comm<int> > comm = targetMap->getComm();
reduceAll (*comm, REDUCE_SUM, localNumErrors, ptr (&globalNumErrors));
if (globalNumErrors != 0) {
std::ostringstream os;
os << "Proc " << comm->getRank() << ": " << localNumErrors
<< " incorrect value" << (localNumErrors != 1 ? "s" : "")
<< ". Error locations: [ ";
std::copy (errorLocations.begin(), errorLocations.end(),
std::ostream_iterator<GO> (os, " "));
os << "].";
// Iterate through all processes in the communicator,
// printing out each process' local errors.
for (int p = 0; p < comm->getSize(); ++p) {
if (p == comm->getRank()) {
cerr << os.str() << endl;
}
// Barriers to let output finish.
comm->barrier();
comm->barrier();
comm->barrier();
}
TEUCHOS_TEST_FOR_EXCEPTION(globalNumErrors != 0, std::logic_error,
"Over all procs: " << globalNumErrors << " total error"
<< (globalNumErrors != 1 ? "s" : "") << ".");
} // if there were any errors in column j
} // for each column j
}
};
//! Instantiate a MultiVectorFillerTester and run the test.
template<class ScalarType,
class LocalOrdinalType,
class GlobalOrdinalType,
class NodeType>
void
testMultiVectorFiller (const Teuchos::RCP<const Teuchos::Comm<int> >& comm,
const size_t unknownsPerNode,
const GlobalOrdinalType unknownsPerElt,
const size_t numCols,
const Teuchos::RCP<Teuchos::FancyOStream>& outStream,
const Teuchos::EVerbosityLevel verbLevel)
{
using Tpetra::createContigMapWithNode;
using Teuchos::FancyOStream;
using Teuchos::getFancyOStream;
using Teuchos::oblackholestream;
using Teuchos::ParameterList;
using Teuchos::RCP;
using Teuchos::rcp;
using std::cerr;
using std::endl;
typedef ScalarType ST;
typedef LocalOrdinalType LO;
typedef GlobalOrdinalType GO;
typedef NodeType NT;
typedef ::Tpetra::Map<LO, GO, NT> map_type;
typedef Tpetra::MultiVector<ST, LO, GO, NT> MV;
typedef Tpetra::global_size_t GST;
RCP<FancyOStream> out = outStream.is_null() ?
getFancyOStream (rcp (new oblackholestream)) : outStream;
const GST INV = Teuchos::OrdinalTraits<GST>::invalid ();
const GO indexBase = 0;
RCP<const map_type> targetMap =
rcp (new map_type (INV, unknownsPerNode, indexBase, comm));
std::ostringstream os;
try {
MultiVectorFillerTester<MV>::testSameMap (targetMap, unknownsPerElt, numCols, out, verbLevel);
} catch (std::exception& e) {
os << e.what();
}
for (int p = 0; p < comm->getSize(); ++p) {
if (p == comm->getRank()) {
*out << "On process " << comm->getRank() << ": " << os.str() << endl;
}
comm->barrier();
comm->barrier();
comm->barrier();
}
}
/// \brief Test the sortAndMergeIn() utility function.
///
/// If any test fails, this function throws std::logic_error with
/// an informative message. If all tests pass, this function
/// returns with no externally visible side effects.
void
testSortAndMergeIn ();
} // namespace Test
} // namespace Tpetra
#endif // __Tpetra_MultiVectorFiller_hpp
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