This file is indexed.

/usr/include/trilinos/Tpetra_RowMatrixTransposer_decl.hpp is in libtrilinos-tpetra-dev 12.10.1-3.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
// @HEADER
// ***********************************************************************
//
//          Tpetra: Templated Linear Algebra Services Package
//                 Copyright (2008) Sandia Corporation
//
// Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation,
// the U.S. Government retains certain rights in this software.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// 1. Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//
// 2. Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
//
// 3. Neither the name of the Corporation nor the names of the
// contributors may be used to endorse or promote products derived from
// this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
// PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE
// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
// PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
// NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
// SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// Questions? Contact Michael A. Heroux (maherou@sandia.gov)
//
// ************************************************************************
// @HEADER

#ifndef TPETRA_ROWMATRIXTRANSPOSER_DECL_HPP
#define TPETRA_ROWMATRIXTRANSPOSER_DECL_HPP

/// \file Tpetra_RowMatrixTransposer_decl.hpp
///
/// Declaration of Tpetra::RowMatrixTransposer.

#include <Tpetra_CrsMatrix_decl.hpp>

namespace Tpetra {

/// \class RowMatrixTransposer
/// \brief Construct and (optionally) redistribute the explicitly
///   stored transpose of a CrsMatrix.
///
/// This class is based on the EpetraExt version.  It first transposes
/// the matrix to an intermediate version with overlapping row map.
/// That matrix is then converted to a final version whose row map is
/// "unique", i.e., a row is wholly owned by one process.
///
/// This class takes the same template parameters as CrsMatrix.
template<class Scalar = ::Tpetra::Details::DefaultTypes::scalar_type,
         class LocalOrdinal = ::Tpetra::Details::DefaultTypes::local_ordinal_type,
         class GlobalOrdinal = ::Tpetra::Details::DefaultTypes::global_ordinal_type,
         class Node = ::Tpetra::Details::DefaultTypes::node_type>
class RowMatrixTransposer {
public:
  //! @name Typedefs
  //@{
  typedef Scalar scalar_type;
  typedef LocalOrdinal local_ordinal_type;
  typedef GlobalOrdinal global_ordinal_type;
  typedef Node node_type;

  typedef Map<LocalOrdinal, GlobalOrdinal, Node> map_type;
  typedef CrsMatrix<Scalar, LocalOrdinal, GlobalOrdinal, Node> crs_matrix_type;

  //@}
  //! @name Constructors
  //@{

  //! Constructor that takes the matrix to transpose.
  RowMatrixTransposer (const Teuchos::RCP<const crs_matrix_type>& origMatrix,const std::string & label = std::string());

  //@}
  //! @name Methods for computing the explicit transpose.
  //@{

  //! Compute and return the transpose of the matrix given to the constructor.
  Teuchos::RCP<crs_matrix_type> createTranspose();

  /// \brief Compute and return the transpose of the matrix given to the constructor.
  ///
  /// In this call, we (potentially) leave the matrix with an
  /// overlapping row Map.  This is a perfectly valid matrix, but
  /// won't work correctly with some routines in Ifpack or Muelu.
  ///
  /// \warning This routine leaves overlapping rows.  Unless you're
  /// sure that's OK, call createTranspose() instead.
  Teuchos::RCP<crs_matrix_type> createTransposeLocal ();

private:
  //! The original matrix to be transposed.
  Teuchos::RCP<const crs_matrix_type> origMatrix_;

  //! Label for timers
  std::string label_;
};


}

#endif /* TPETRA_ROWMATRIXTRANSPOSER_DECL_HPP */