/usr/include/zerg.h is in libzerg0-dev 1.0.7-8.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 | /* Filename: zerg.h
* Blast parser
* Apua Cesar de Miranda Paquola <apua@iq.usp.br>
*/
#ifndef _zerg_h_
#define _zerg_h_
#define BUFFER_OVERFLOW -1
#define BLAST_VERSION 1 /* Esta tem que ser a primeira */
#define QUERY_NAME 2
#define QUERY_ANNOTATION 3
#define QUERY_LENGTH 4
#define NOHITS 5
#define DESCRIPTION_HITNAME 6
#define DESCRIPTION_ANNOTATION 7
#define DESCRIPTION_SCORE 8
#define DESCRIPTION_EVALUE 9
#define SUBJECT_NAME 10
#define SUBJECT_ANNOTATION 11
#define SUBJECT_LENGTH 12
#define SCORE_BITS 13
#define SCORE 14
#define EVALUE 15
#define IDENTITIES 16
#define ALIGNMENT_LENGTH 17
#define PERCENT_IDENTITIES 18
#define GAPS 19
#define QUERY_ORIENTATION 20
#define SUBJECT_ORIENTATION 21
#define QUERY_START 22
#define QUERY_END 23
#define SUBJECT_START 24
#define SUBJECT_END 25
#define END_OF_REPORT 26
#define POSITIVES 27
#define PERCENT_POSITIVES 28
#define QUERY_FRAME 29
#define SUBJECT_FRAME 30
#define UNMATCHED 31
#define ROUND_NUMBER 32
#define HSP_METHOD 33
#define SEARCHING 34
#define QUERY_ALI 35
#define SUBJECT_ALI 36
#define ROUND_SEQ_FOUND 37
#define ROUND_SEQ_NEW 38
#define CONVERGED 39
#define REFERENCE 40
#define TAIL_OF_REPORT 41
#define DATABASE 42
#define AFTER_LAST_TOKEN 43 // dummy token, must be last
#ifdef __cplusplus
extern "C" {
#endif
void zerg_open_file(char* filename);
void zerg_close_file();
void zerg_read_stream(FILE* __stream);
void zerg_ignore(int code);
void zerg_ignore_all();
void zerg_unignore(int code);
void zerg_unignore_all();
int zerg_get_token(int* code, char **value);
int zerg_get_token_offset();
#ifdef __cplusplus
}
#endif
#endif
|