python-cogent 1.9-9 in debian - stretch / main

About

This package is 1.0 MB. It is available at http://ftp.debian.org/debian/pool/main/p/python-cogent/python-cogent_1.9-9_amd64.deb .

View its full control file here: debian/control.

Description

framework for genomic biology

Relations

This package depends on: libc6 (>= 2.14), python (<< 2.8), python (>= 2.7~), python-numpy (>= 1:1.10.0~b1), python-numpy-abi9, python:any (<< 2.8), python:any (>= 2.7.5-5~), python-matplotlib.

This package recommends: blast2, bwa, cd-hit, clearcut, dialign, muscle.

This package does not conflict with any other package.

Package Contents

This package is indexed.

python-cogent 1.9-9 is in debian - stretch / main. This package's architecture is: amd64.

File Mime Type Owner Mode Size
postinst text/x-shellscript N/A N/A 163 bytes
prerm text/x-shellscript N/A N/A 263 bytes
/usr/ root:root 0o755
/usr/lib/ root:root 0o755
/usr/lib/python2.7/ root:root 0o755
/usr/lib/python2.7/dist-packages/ root:root 0o755
/usr/lib/python2.7/dist-packages/cogent/ root:root 0o755
/usr/lib/python2.7/dist-packages/cogent-1.9.egg-info/ root:root 0o755
/usr/lib/python2.7/dist-packages/cogent-1.9.egg-info/dependency_links.txt application/octet-stream root:root 0o644 1 byte
/usr/lib/python2.7/dist-packages/cogent-1.9.egg-info/PKG-INFO text/plain root:root 0o644 812 bytes
/usr/lib/python2.7/dist-packages/cogent-1.9.egg-info/requires.txt text/plain root:root 0o644 86 bytes
/usr/lib/python2.7/dist-packages/cogent-1.9.egg-info/top_level.txt text/plain root:root 0o644 7 bytes
/usr/lib/python2.7/dist-packages/cogent/align/ root:root 0o755
/usr/lib/python2.7/dist-packages/cogent/align/algorithm.py text/x-python root:root 0o644 12.5 KB
/usr/lib/python2.7/dist-packages/cogent/align/align.py text/x-python root:root 0o644 2.8 KB
/usr/lib/python2.7/dist-packages/cogent/align/_compare.x86_64-linux-gnu.so application/x-sharedlib root:root 0o644 31.3 KB
/usr/lib/python2.7/dist-packages/cogent/align/dp_calculation.py text/x-python root:root 0o644 5.8 KB
/usr/lib/python2.7/dist-packages/cogent/align/indel_model.py text/x-python root:root 0o644 3.9 KB
/usr/lib/python2.7/dist-packages/cogent/align/indel_positions.py text/x-python root:root 0o644 8.0 KB
/usr/lib/python2.7/dist-packages/cogent/align/__init__.py text/x-python root:root 0o644 655 bytes
/usr/lib/python2.7/dist-packages/cogent/align/_pairwise_pogs.x86_64-linux-gnu.so application/x-sharedlib root:root 0o644 180.8 KB
/usr/lib/python2.7/dist-packages/cogent/align/pairwise.py text/x-python root:root 0o644 37.2 KB
/usr/lib/python2.7/dist-packages/cogent/align/_pairwise_seqs.x86_64-linux-gnu.so application/x-sharedlib root:root 0o644 168.2 KB
/usr/lib/python2.7/dist-packages/cogent/align/progressive.py text/x-python root:root 0o644 3.8 KB
/usr/lib/python2.7/dist-packages/cogent/align/pycompare.py text/x-python root:root 0o644 2.4 KB
/usr/lib/python2.7/dist-packages/cogent/align/traceback.py text/x-python root:root 0o644 2.9 KB
/usr/lib/python2.7/dist-packages/cogent/align/weights/ root:root 0o755
/usr/lib/python2.7/dist-packages/cogent/align/weights/__init__.py text/x-python root:root 0o644 407 bytes
/usr/lib/python2.7/dist-packages/cogent/align/weights/methods.py text/x-python root:root 0o644 17.8 KB
/usr/lib/python2.7/dist-packages/cogent/align/weights/util.py text/x-python root:root 0o644 12.1 KB
/usr/lib/python2.7/dist-packages/cogent/app/ root:root 0o755
/usr/lib/python2.7/dist-packages/cogent/app/blast.py text/x-python root:root 0o644 45.4 KB
/usr/lib/python2.7/dist-packages/cogent/app/blat.py text/x-python root:root 0o644 16.2 KB
/usr/lib/python2.7/dist-packages/cogent/app/bwa.py text/x-python root:root 0o644 25.4 KB
/usr/lib/python2.7/dist-packages/cogent/app/carnac.py text/x-python root:root 0o644 3.3 KB
/usr/lib/python2.7/dist-packages/cogent/app/cdbfasta.py text/x-python root:root 0o644 10.3 KB
/usr/lib/python2.7/dist-packages/cogent/app/cd_hit.py text/x-python root:root 0o644 11.8 KB
/usr/lib/python2.7/dist-packages/cogent/app/clearcut.py text/x-python root:root 0o644 13.4 KB
/usr/lib/python2.7/dist-packages/cogent/app/clustalw.py text/x-python root:root 0o644 28.1 KB
/usr/lib/python2.7/dist-packages/cogent/app/cmfinder.py text/x-python root:root 0o644 8.2 KB
/usr/lib/python2.7/dist-packages/cogent/app/comrna.py text/x-python root:root 0o644 2.9 KB
/usr/lib/python2.7/dist-packages/cogent/app/consan.py text/x-python root:root 0o644 5.4 KB
/usr/lib/python2.7/dist-packages/cogent/app/contrafold.py text/x-python root:root 0o644 818 bytes
/usr/lib/python2.7/dist-packages/cogent/app/cove.py text/x-python root:root 0o644 6.9 KB
/usr/lib/python2.7/dist-packages/cogent/app/dialign.py text/x-python root:root 0o644 10.0 KB
/usr/lib/python2.7/dist-packages/cogent/app/dotur.py text/x-python root:root 0o644 8.1 KB
/usr/lib/python2.7/dist-packages/cogent/app/dynalign.py text/x-python root:root 0o644 9.1 KB
/usr/lib/python2.7/dist-packages/cogent/app/fastq_join.py text/x-python root:root 0o644 8.6 KB
/usr/lib/python2.7/dist-packages/cogent/app/fasttree.py text/x-python root:root 0o644 6.2 KB
/usr/lib/python2.7/dist-packages/cogent/app/fasttree_v1.py text/x-python root:root 0o644 5.4 KB
/usr/lib/python2.7/dist-packages/cogent/app/flash.py text/x-python root:root 0o644 14.9 KB
/usr/lib/python2.7/dist-packages/cogent/app/foldalign.py text/x-python root:root 0o644 1.4 KB
/usr/lib/python2.7/dist-packages/cogent/app/formatdb.py text/x-python root:root 0o644 8.5 KB
/usr/lib/python2.7/dist-packages/cogent/app/gctmpca.py text/x-python root:root 0o644 11.7 KB
/usr/lib/python2.7/dist-packages/cogent/app/guppy.py text/x-python root:root 0o644 7.2 KB
/usr/lib/python2.7/dist-packages/cogent/app/ilm.py text/x-python root:root 0o644 3.5 KB
/usr/lib/python2.7/dist-packages/cogent/app/infernal.py text/x-python root:root 0o644 69.1 KB
/usr/lib/python2.7/dist-packages/cogent/app/__init__.py text/x-python root:root 0o644 1.5 KB
/usr/lib/python2.7/dist-packages/cogent/app/knetfold.py text/x-python root:root 0o644 3.5 KB
/usr/lib/python2.7/dist-packages/cogent/app/mafft.py text/x-python root:root 0o644 18.3 KB
/usr/lib/python2.7/dist-packages/cogent/app/mfold.py text/x-python root:root 0o644 4.2 KB
/usr/lib/python2.7/dist-packages/cogent/app/mothur.py text/x-python root:root 0o644 19.4 KB
/usr/lib/python2.7/dist-packages/cogent/app/msms.py text/x-python root:root 0o644 6.0 KB
/usr/lib/python2.7/dist-packages/cogent/app/muscle.py text/x-python root:root 0o644 28.4 KB
/usr/lib/python2.7/dist-packages/cogent/app/muscle_v38.py text/x-python root:root 0o644 28.4 KB
/usr/lib/python2.7/dist-packages/cogent/app/nupack.py text/x-python root:root 0o644 6.1 KB
/usr/lib/python2.7/dist-packages/cogent/app/pandaseq.py text/x-python root:root 0o644 6.4 KB
/usr/lib/python2.7/dist-packages/cogent/app/parameters.py text/x-python root:root 0o644 18.5 KB
/usr/lib/python2.7/dist-packages/cogent/app/parsinsert.py text/x-python root:root 0o644 3.3 KB
/usr/lib/python2.7/dist-packages/cogent/app/pfold.py text/x-python root:root 0o644 4.3 KB
/usr/lib/python2.7/dist-packages/cogent/app/pknotsrg.py text/x-python root:root 0o644 2.3 KB
/usr/lib/python2.7/dist-packages/cogent/app/pplacer.py text/x-python root:root 0o644 8.5 KB
/usr/lib/python2.7/dist-packages/cogent/app/raxml.py text/x-python root:root 0o644 40.0 KB
/usr/lib/python2.7/dist-packages/cogent/app/raxml_v730.py text/x-python root:root 0o644 40.0 KB
/usr/lib/python2.7/dist-packages/cogent/app/rdp_classifier20.py text/x-python root:root 0o644 26.9 KB
/usr/lib/python2.7/dist-packages/cogent/app/rdp_classifier.py text/x-python root:root 0o644 22.4 KB
/usr/lib/python2.7/dist-packages/cogent/app/rnaalifold.py text/x-python root:root 0o644 4.9 KB
/usr/lib/python2.7/dist-packages/cogent/app/rnaforester.py text/x-python root:root 0o644 6.2 KB
/usr/lib/python2.7/dist-packages/cogent/app/rnashapes.py text/x-python root:root 0o644 5.4 KB
/usr/lib/python2.7/dist-packages/cogent/app/rnaview.py text/x-python root:root 0o644 6.8 KB
/usr/lib/python2.7/dist-packages/cogent/app/rtax.py text/x-python root:root 0o644 11.0 KB
/usr/lib/python2.7/dist-packages/cogent/app/seqprep.py text/x-python root:root 0o644 14.6 KB
/usr/lib/python2.7/dist-packages/cogent/app/sfffile.py text/x-python root:root 0o644 2.3 KB
/usr/lib/python2.7/dist-packages/cogent/app/sffinfo.py text/x-python root:root 0o644 5.6 KB
/usr/lib/python2.7/dist-packages/cogent/app/sfold.py text/x-python root:root 0o644 2.4 KB
/usr/lib/python2.7/dist-packages/cogent/app/stride.py text/x-python root:root 0o644 2.7 KB
/usr/lib/python2.7/dist-packages/cogent/app/uclust.py text/x-python root:root 0o644 21.8 KB
/usr/lib/python2.7/dist-packages/cogent/app/unafold.py text/x-python root:root 0o644 3.0 KB
/usr/lib/python2.7/dist-packages/cogent/app/usearch.py text/x-python root:root 0o644 52.8 KB
/usr/lib/python2.7/dist-packages/cogent/app/util.py text/x-python root:root 0o644 30.1 KB
/usr/lib/python2.7/dist-packages/cogent/app/vienna_package.py text/x-python root:root 0o644 13.8 KB
/usr/lib/python2.7/dist-packages/cogent/cluster/ root:root 0o755
/usr/lib/python2.7/dist-packages/cogent/cluster/approximate_mds.py text/x-python root:root 0o644 29.9 KB
/usr/lib/python2.7/dist-packages/cogent/cluster/goodness_of_fit.py text/x-c++ root:root 0o644 8.1 KB
/usr/lib/python2.7/dist-packages/cogent/cluster/__init__.py text/x-python root:root 0o644 486 bytes
/usr/lib/python2.7/dist-packages/cogent/cluster/metric_scaling.py text/x-python root:root 0o644 7.1 KB
/usr/lib/python2.7/dist-packages/cogent/cluster/nmds.py text/x-c++ root:root 0o644 18.2 KB
/usr/lib/python2.7/dist-packages/cogent/cluster/procrustes.py text/x-python root:root 0o644 5.7 KB
/usr/lib/python2.7/dist-packages/cogent/cluster/UPGMA.py text/x-python root:root 0o644 6.8 KB
/usr/lib/python2.7/dist-packages/cogent/core/ root:root 0o755
/usr/lib/python2.7/dist-packages/cogent/core/alignment.py text/x-python root:root 0o644 110.4 KB
/usr/lib/python2.7/dist-packages/cogent/core/alphabet.py text/x-python root:root 0o644 31.8 KB
/usr/lib/python2.7/dist-packages/cogent/core/annotation.py text/x-c++ root:root 0o644 12.1 KB
/usr/lib/python2.7/dist-packages/cogent/core/bitvector.py text/x-python root:root 0o644 27.6 KB
/usr/lib/python2.7/dist-packages/cogent/core/entity.py text/x-python root:root 0o644 43.8 KB
/usr/lib/python2.7/dist-packages/cogent/core/genetic_code.py text/x-python root:root 0o644 13.1 KB
/usr/lib/python2.7/dist-packages/cogent/core/info.py text/x-python root:root 0o644 4.5 KB
/usr/lib/python2.7/dist-packages/cogent/core/__init__.py text/x-python root:root 0o644 611 bytes
/usr/lib/python2.7/dist-packages/cogent/core/location.py text/x-python root:root 0o644 30.3 KB
/usr/lib/python2.7/dist-packages/cogent/core/moltype.py text/x-python root:root 0o644 39.9 KB
/usr/lib/python2.7/dist-packages/cogent/core/profile.py text/x-python root:root 0o644 29.5 KB
/usr/lib/python2.7/dist-packages/cogent/core/sequence.py text/x-python root:root 0o644 55.0 KB
/usr/lib/python2.7/dist-packages/cogent/core/tree.py text/x-python root:root 0o644 84.1 KB
/usr/lib/python2.7/dist-packages/cogent/core/usage.py text/x-python root:root 0o644 25.8 KB
/usr/lib/python2.7/dist-packages/cogent/data/ root:root 0o755
/usr/lib/python2.7/dist-packages/cogent/data/energy_params.py text/x-python root:root 0o644 3.2 KB
/usr/lib/python2.7/dist-packages/cogent/data/__init__.py text/x-python root:root 0o644 424 bytes
/usr/lib/python2.7/dist-packages/cogent/data/ligand_properties.py text/x-python root:root 0o644 602 bytes
/usr/lib/python2.7/dist-packages/cogent/data/molecular_weight.py text/x-python root:root 0o644 1.8 KB
/usr/lib/python2.7/dist-packages/cogent/data/nucleic_properties.py text/x-python root:root 0o644 216 bytes
/usr/lib/python2.7/dist-packages/cogent/data/protein_properties.py text/x-python root:root 0o644 19.5 KB
/usr/lib/python2.7/dist-packages/cogent/db/ root:root 0o755
/usr/lib/python2.7/dist-packages/cogent/db/ensembl/ root:root 0o755
/usr/lib/python2.7/dist-packages/cogent/db/ensembl/assembly.py text/x-c++ root:root 0o644 17.0 KB
/usr/lib/python2.7/dist-packages/cogent/db/ensembl/compara.py text/x-c++ root:root 0o644 19.1 KB
/usr/lib/python2.7/dist-packages/cogent/db/ensembl/database.py text/x-c++ root:root 0o644 4.1 KB
/usr/lib/python2.7/dist-packages/cogent/db/ensembl/feature_level.py text/x-python root:root 0o644 5.5 KB
/usr/lib/python2.7/dist-packages/cogent/db/ensembl/genome.py text/x-c++ root:root 0o644 27.7 KB
/usr/lib/python2.7/dist-packages/cogent/db/ensembl/host.py text/x-python root:root 0o644 5.5 KB
/usr/lib/python2.7/dist-packages/cogent/db/ensembl/__init__.py text/x-python root:root 0o644 606 bytes
/usr/lib/python2.7/dist-packages/cogent/db/ensembl/name.py text/x-c++ root:root 0o644 3.1 KB
/usr/lib/python2.7/dist-packages/cogent/db/ensembl/region.py text/x-c++ root:root 0o644 53.5 KB
/usr/lib/python2.7/dist-packages/cogent/db/ensembl/related_region.py text/x-c++ root:root 0o644 12.7 KB
/usr/lib/python2.7/dist-packages/cogent/db/ensembl/sequence.py text/x-python root:root 0o644 5.4 KB
/usr/lib/python2.7/dist-packages/cogent/db/ensembl/species.py text/x-c++ root:root 0o644 12.3 KB
/usr/lib/python2.7/dist-packages/cogent/db/ensembl/util.py text/x-c++ root:root 0o644 3.9 KB
/usr/lib/python2.7/dist-packages/cogent/db/__init__.py text/x-python root:root 0o644 757 bytes
/usr/lib/python2.7/dist-packages/cogent/db/ncbi.py text/x-python root:root 0o644 27.5 KB
/usr/lib/python2.7/dist-packages/cogent/db/pdb.py text/x-python root:root 0o644 839 bytes
/usr/lib/python2.7/dist-packages/cogent/db/rfam.py text/x-python root:root 0o644 1.1 KB
/usr/lib/python2.7/dist-packages/cogent/db/util.py text/x-python root:root 0o644 4.1 KB
/usr/lib/python2.7/dist-packages/cogent/draw/ root:root 0o755
/usr/lib/python2.7/dist-packages/cogent/draw/arrow_rates.py text/x-python root:root 0o644 9.3 KB
/usr/lib/python2.7/dist-packages/cogent/draw/codon_usage.py text/x-python root:root 0o644 13.7 KB
/usr/lib/python2.7/dist-packages/cogent/draw/compatibility.py text/x-python root:root 0o644 19.2 KB
/usr/lib/python2.7/dist-packages/cogent/draw/dendrogram.py text/x-python root:root 0o644 27.2 KB
/usr/lib/python2.7/dist-packages/cogent/draw/dinuc.py text/x-python root:root 0o644 4.5 KB
/usr/lib/python2.7/dist-packages/cogent/draw/distribution_plots.py text/x-python root:root 0o644 25.4 KB
/usr/lib/python2.7/dist-packages/cogent/draw/dotplot.py text/x-python root:root 0o644 5.6 KB
/usr/lib/python2.7/dist-packages/cogent/draw/fancy_arrow.py text/x-python root:root 0o644 3.2 KB
/usr/lib/python2.7/dist-packages/cogent/draw/__init__.py text/x-python root:root 0o644 903 bytes
/usr/lib/python2.7/dist-packages/cogent/draw/legend.py text/x-python root:root 0o644 3.1 KB
/usr/lib/python2.7/dist-packages/cogent/draw/linear.py text/x-python root:root 0o644 40.2 KB
/usr/lib/python2.7/dist-packages/cogent/draw/multivariate_plot.py text/plain root:root 0o644 9.1 KB
/usr/lib/python2.7/dist-packages/cogent/draw/rlg2mpl.py text/plain root:root 0o644 11.4 KB
/usr/lib/python2.7/dist-packages/cogent/draw/util.py text/x-python root:root 0o644 33.3 KB
/usr/lib/python2.7/dist-packages/cogent/evolve/ root:root 0o755
/usr/lib/python2.7/dist-packages/cogent/evolve/best_likelihood.py text/x-python root:root 0o644 4.7 KB
/usr/lib/python2.7/dist-packages/cogent/evolve/bootstrap.py text/x-python root:root 0o644 7.2 KB
/usr/lib/python2.7/dist-packages/cogent/evolve/coevolution.py text/x-python root:root 0o644 106.3 KB
/usr/lib/python2.7/dist-packages/cogent/evolve/discrete_markov.py text/x-c++ root:root 0o644 3.4 KB
/usr/lib/python2.7/dist-packages/cogent/evolve/__init__.py text/x-python root:root 0o644 731 bytes
/usr/lib/python2.7/dist-packages/cogent/evolve/likelihood_calculation.py text/x-python root:root 0o644 10.5 KB
/usr/lib/python2.7/dist-packages/cogent/evolve/likelihood_function.py text/x-python root:root 0o644 15.8 KB
/usr/lib/python2.7/dist-packages/cogent/evolve/likelihood_tree.py text/x-python root:root 0o644 13.4 KB
/usr/lib/python2.7/dist-packages/cogent/evolve/_likelihood_tree.x86_64-linux-gnu.so application/x-sharedlib root:root 0o644 149.6 KB
/usr/lib/python2.7/dist-packages/cogent/evolve/models.py text/plain root:root 0o644 38.7 KB
/usr/lib/python2.7/dist-packages/cogent/evolve/motif_prob_model.py text/x-python root:root 0o644 10.9 KB
/usr/lib/python2.7/dist-packages/cogent/evolve/pairwise_distance.py text/x-c++ root:root 0o644 14.3 KB
/usr/lib/python2.7/dist-packages/cogent/evolve/_pairwise_distance.x86_64-linux-gnu.so application/x-sharedlib root:root 0o644 51.4 KB
/usr/lib/python2.7/dist-packages/cogent/evolve/parameter_controller.py text/x-python root:root 0o644 15.6 KB
/usr/lib/python2.7/dist-packages/cogent/evolve/predicate.py text/x-python root:root 0o644 8.8 KB
/usr/lib/python2.7/dist-packages/cogent/evolve/simulate.py text/x-python root:root 0o644 4.8 KB
/usr/lib/python2.7/dist-packages/cogent/evolve/solved_models.py text/plain root:root 0o644 3.3 KB
/usr/lib/python2.7/dist-packages/cogent/evolve/_solved_models.x86_64-linux-gnu.so application/x-sharedlib root:root 0o644 132.7 KB
/usr/lib/python2.7/dist-packages/cogent/evolve/substitution_calculation.py text/x-python root:root 0o644 2.4 KB
/usr/lib/python2.7/dist-packages/cogent/evolve/substitution_model.py text/x-python root:root 0o644 38.4 KB
/usr/lib/python2.7/dist-packages/cogent/format/ root:root 0o755
/usr/lib/python2.7/dist-packages/cogent/format/alignment.py text/x-python root:root 0o644 8.3 KB
/usr/lib/python2.7/dist-packages/cogent/format/bedgraph.py text/x-python root:root 0o644 5.0 KB
/usr/lib/python2.7/dist-packages/cogent/format/clustal.py text/x-python root:root 0o644 1.9 KB
/usr/lib/python2.7/dist-packages/cogent/format/fasta.py text/x-python root:root 0o644 3.0 KB
/usr/lib/python2.7/dist-packages/cogent/format/__init__.py text/x-python root:root 0o644 816 bytes
/usr/lib/python2.7/dist-packages/cogent/format/mage.py text/x-python root:root 0o644 25.2 KB
/usr/lib/python2.7/dist-packages/cogent/format/motif.py text/x-python root:root 0o644 65.7 KB
/usr/lib/python2.7/dist-packages/cogent/format/nexus.py text/x-python root:root 0o644 1.4 KB
/usr/lib/python2.7/dist-packages/cogent/format/pdb_color.py text/x-python root:root 0o644 9.5 KB
/usr/lib/python2.7/dist-packages/cogent/format/pdb.py text/plain root:root 0o644 4.5 KB
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