python-guiqwt 3.0.3-1 / usr / lib / python2.7 / dist-packages / guiqwt / image.py

# -*- coding: utf-8 -*-
#
# Copyright © 2009-2010 CEA
# Pierre Raybaut
# Licensed under the terms of the CECILL License
# (see guiqwt/__init__.py for details)

# pylint: disable=C0103

"""
guiqwt.image
------------

The `image` module provides image-related objects and functions:

    * :py:class:`guiqwt.image.ImagePlot`: a 2D curve and image plotting widget,
      derived from :py:class:`guiqwt.curve.CurvePlot`
    * :py:class:`guiqwt.image.ImageItem`: simple images
    * :py:class:`guiqwt.image.TrImageItem`: images supporting arbitrary
      affine transform
    * :py:class:`guiqwt.image.XYImageItem`: images with non-linear X/Y axes
    * :py:class:`guiqwt.image.Histogram2DItem`: 2D histogram
    * :py:class:`guiqwt.image.ImageFilterItem`: rectangular filtering area
      that may be resized and moved onto the processed image
    * :py:func:`guiqwt.image.assemble_imageitems`
    * :py:func:`guiqwt.image.get_plot_source_rect`
    * :py:func:`guiqwt.image.get_image_from_plot`

``ImageItem``, ``TrImageItem``, ``XYImageItem``, ``Histogram2DItem`` and
``ImageFilterItem`` objects are plot items (derived from QwtPlotItem) that
may be displayed on a :py:class:`guiqwt.image.ImagePlot` plotting widget.

.. seealso::

    Module :py:mod:`guiqwt.curve`
        Module providing curve-related plot items and plotting widgets

    Module :py:mod:`guiqwt.plot`
        Module providing ready-to-use curve and image plotting widgets and
        dialog boxes

Examples
~~~~~~~~

Create a basic image plotting widget:
    
    * before creating any widget, a `QApplication` must be instantiated (that
      is a `Qt` internal requirement):

>>> import guidata
>>> app = guidata.qapplication()

    * that is mostly equivalent to the following (the only difference is that
      the `guidata` helper function also installs the `Qt` translation
      corresponding to the system locale):

>>> from PyQt4.QtGui import QApplication
>>> app = QApplication([])

    * now that a `QApplication` object exists, we may create the plotting
      widget:

>>> from guiqwt.image import ImagePlot
>>> plot = ImagePlot(title="Example")

Generate random data for testing purpose:

>>> import numpy as np
>>> data = np.random.rand(100, 100)

Create a simple image item:
    
    * from the associated plot item class (e.g. `XYImageItem` to create
      an image with non-linear X/Y axes): the item properties are then
      assigned by creating the appropriate style parameters object
      (e.g. :py:class:`guiqwt.styles.ImageParam`)

>>> from guiqwt.curve import ImageItem
>>> from guiqwt.styles import ImageParam
>>> param = ImageParam()
>>> param.label = 'My image'
>>> image = ImageItem(param)
>>> image.set_data(data)

    * or using the `plot item builder` (see :py:func:`guiqwt.builder.make`):

>>> from guiqwt.builder import make
>>> image = make.image(data, title='My image')

Attach the image to the plotting widget:

>>> plot.add_item(image)

Display the plotting widget:

>>> plot.show()
>>> app.exec_()

Reference
~~~~~~~~~

.. autoclass:: ImagePlot
   :members:
   :inherited-members:
.. autoclass:: BaseImageItem
   :members:
   :inherited-members:
.. autoclass:: RawImageItem
   :members:
   :inherited-members:
.. autoclass:: ImageItem
   :members:
   :inherited-members:
.. autoclass:: TrImageItem
   :members:
   :inherited-members:
.. autoclass:: XYImageItem
   :members:
   :inherited-members:
.. autoclass:: RGBImageItem
   :members:
   :inherited-members:
.. autoclass:: MaskedImageItem
   :members:
   :inherited-members:
.. autoclass:: ImageFilterItem
   :members:
   :inherited-members:
.. autoclass:: XYImageFilterItem
   :members:
   :inherited-members:
.. autoclass:: Histogram2DItem
   :members:
   :inherited-members:

.. autofunction:: assemble_imageitems
.. autofunction:: get_plot_qrect
.. autofunction:: get_image_from_plot
"""

#FIXME: traceback in scaler when adding here 'from __future__ import division'

from __future__ import print_function, unicode_literals

import sys
import os.path as osp
from math import fabs

import numpy as np

from guidata.qt.QtGui import QColor, QImage
from guidata.qt.QtCore import QRectF, QPointF, QRect

from guidata.utils import assert_interfaces_valid, update_dataset
from guidata.py3compat import getcwd, is_text_string

# Local imports
from guiqwt.transitional import QwtPlotItem, QwtInterval
from guiqwt.config import _
from guiqwt.interfaces import (IBasePlotItem, IBaseImageItem, IHistDataSource,
                               IImageItemType, ITrackableItemType,
                               IColormapImageItemType, IVoiImageItemType,
                               ISerializableType, ICSImageItemType,
                               IExportROIImageItemType, IStatsImageItemType)
from guiqwt.curve import CurvePlot, CurveItem, PolygonMapItem
from guiqwt.colormap import FULLRANGE, get_cmap, get_cmap_name
from guiqwt.styles import (ImageParam, ImageAxesParam, TrImageParam,
                           RGBImageParam, MaskedImageParam, XYImageParam,
                           RawImageParam)
from guiqwt.shapes import RectangleShape
from guiqwt import io
from guiqwt.geometry import translate, scale, rotate, colvector
from guiqwt.baseplot import canvas_to_axes, axes_to_canvas

stderr = sys.stderr
try:
    from guiqwt.histogram2d import histogram2d, histogram2d_func
    from guiqwt._scaler import (_histogram, _scale_tr, _scale_xy, _scale_rect,
                                _scale_quads,
                                INTERP_NEAREST, INTERP_LINEAR, INTERP_AA)
except ImportError:
    print(("Module 'guiqwt.image': missing C extension"), file=sys.stderr)
    print(("try running :"
                         "python setup.py build_ext --inplace -c mingw32" ), file=sys.stderr)
    raise

LUT_SIZE = 1024
LUT_MAX  = float(LUT_SIZE-1)

def _nanmin(data):
    if isinstance(data, np.ma.MaskedArray):
        data = data.data
    if data.dtype.name in ("float32", "float64", "float128"):
        return np.nanmin(data)
    else:
        return data.min()

def _nanmax(data):
    if isinstance(data, np.ma.MaskedArray):
        data = data.data
    if data.dtype.name in ("float32", "float64", "float128"):
        return np.nanmax(data)
    else:
        return data.max()


def pixelround(x, corner=None):
    """
    Return pixel index (int) from pixel coordinate (float)
    corner: None (not a corner), 'TL' (top-left corner),
    'BR' (bottom-right corner)
    """
    assert corner is None or corner in ('TL', 'BR')
    if corner is None:
        return np.floor(x)
    elif corner == 'BR':
        return np.ceil(x)
    elif corner == 'TL':
        return np.floor(x)


#==============================================================================
# Base image item class
#==============================================================================
class BaseImageItem(QwtPlotItem):
    __implements__ = (IBasePlotItem, IBaseImageItem, IHistDataSource,
                      IVoiImageItemType, ICSImageItemType, IStatsImageItemType,
                      IExportROIImageItemType)
    _can_select = True
    _can_resize = False
    _can_move = False
    _can_rotate = False
    _readonly = False
    _private = False

    def __init__(self, data=None, param=None):
        super(BaseImageItem, self).__init__()

        self.bg_qcolor = QColor()

        self.bounds = QRectF()

        # BaseImageItem needs:
        # param.background
        # param.alpha_mask
        # param.alpha
        # param.colormap
        if param is None:
            param = self.get_default_param()
        self.imageparam = param

        self.selected = False

        self.data = None

        self.min = 0.0
        self.max = 1.0
        self.cmap_table = None
        self.cmap = None
        self.colormap_axis = None

        self._offscreen = np.array((1, 1), np.uint32)

        # Linear interpolation is the default interpolation algorithm:
        # it's almost as fast as 'nearest pixel' method but far smoother
        self.interpolate = None
        self.set_interpolation(INTERP_LINEAR)

        x1, y1 = self.bounds.left(), self.bounds.top()
        x2, y2 = self.bounds.right(), self.bounds.bottom()
        self.border_rect = RectangleShape(x1, y1, x2, y2)
        self.border_rect.set_style("plot", "shape/imageborder")
        # A, B, Background, Colormap
        self.lut = (1.0, 0.0, None, np.zeros((LUT_SIZE, ), np.uint32))

        self.set_lut_range([0., 255.])
        self.setItemAttribute(QwtPlotItem.AutoScale)
        self.setItemAttribute(QwtPlotItem.Legend, True)
        self._filename = None # The file this image comes from

        self.histogram_cache = None
        if data is not None:
            self.set_data(data)
        self.imageparam.update_image(self)

    #---- Public API ----------------------------------------------------------
    def get_default_param(self):
        """Return instance of the default imageparam DataSet"""
        raise NotImplementedError
        
    def set_filename(self, fname):
        self._filename = fname

    def get_filename(self):
        fname = self._filename
        if fname is not None and not osp.isfile(fname):
            other_try = osp.join(getcwd(), osp.basename(fname))
            if osp.isfile(other_try):
                self.set_filename(other_try)
                fname = other_try
        return fname

    def get_filter(self, filterobj, filterparam):
        """Provides a filter object over this image's content"""
        raise NotImplementedError

    def get_pixel_coordinates(self, xplot, yplot):
        """
        Return (image) pixel coordinates
        Transform the plot coordinates (arbitrary plot Z-axis unit)
        into the image coordinates (pixel unit)

        Rounding is necessary to obtain array indexes from these coordinates
        """
        return xplot, yplot

    def get_plot_coordinates(self, xpixel, ypixel):
        """
        Return plot coordinates
        Transform the image coordinates (pixel unit)
        into the plot coordinates (arbitrary plot Z-axis unit)
        """
        return xpixel, ypixel

    def get_closest_indexes(self, x, y, corner=None):
        """
        Return closest image pixel indexes
        corner: None (not a corner), 'TL' (top-left corner),
        'BR' (bottom-right corner)
        """
        x, y = self.get_pixel_coordinates(x, y)
        i_max = self.data.shape[1]-1
        j_max = self.data.shape[0]-1
        if corner == 'BR':
            i_max += 1
            j_max += 1
        i = max([0, min([i_max, int(pixelround(x, corner))])])
        j = max([0, min([j_max, int(pixelround(y, corner))])])
        return i, j

    def get_closest_index_rect(self, x0, y0, x1, y1):
        """
        Return closest image rectangular pixel area index bounds
        Avoid returning empty rectangular area (return 1x1 pixel area instead)
        Handle reversed/not-reversed Y-axis orientation
        """
        ix0, iy0 = self.get_closest_indexes(x0, y0, corner='TL')
        ix1, iy1 = self.get_closest_indexes(x1, y1, corner='BR')
        if ix0 > ix1:
            ix1, ix0 = ix0, ix1
        if iy0 > iy1:
            iy1, iy0 = iy0, iy1
        if ix0 == ix1:
            ix1 += 1
        if iy0 == iy1:
            iy1 += 1
        return ix0, iy0, ix1, iy1

    def align_rectangular_shape(self, shape):
        """Align rectangular shape to image pixels"""
        ix0, iy0, ix1, iy1 = self.get_closest_index_rect(*shape.get_rect())
        x0, y0 = self.get_plot_coordinates(ix0, iy0)
        x1, y1 = self.get_plot_coordinates(ix1, iy1)
        shape.set_rect(x0, y0, x1, y1)

    def get_closest_pixel_indexes(self, x, y):
        """
        Return closest pixel indexes
        Instead of returning indexes of an image pixel like the method
        'get_closest_indexes', this method returns the indexes of the
        closest pixel which is not necessarily on the image itself
        (i.e. indexes may be outside image index bounds: negative or
        superior than the image dimension)

        .. note::

            This is *not* the same as retrieving the canvas pixel coordinates 
            (which depends on the zoom level)
        """
        x, y = self.get_pixel_coordinates(x, y)
        i = int(pixelround(x))
        j = int(pixelround(y))
        return i, j

    def get_x_values(self, i0, i1):
        return np.arange(i0, i1)

    def get_y_values(self, j0, j1):
        return np.arange(j0, j1)

    def get_data(self, x0, y0, x1=None, y1=None):
        """
        Return image data
        Arguments: x0, y0 [, x1, y1]
        Return image level at coordinates (x0,y0)

        If x1,y1 are specified:
            
          Return image levels (np.ndarray) in rectangular area (x0,y0,x1,y1)
        """
        i0, j0 = self.get_closest_indexes(x0, y0)
        if x1 is None or y1 is None:
            return self.data[j0, i0]
        else:
            i1, j1 = self.get_closest_indexes(x1, y1)
            i1 += 1
            j1 += 1
            return (self.get_x_values(i0, i1), self.get_y_values(j0, j1),
                    self.data[j0:j1, i0:i1])

    def get_closest_coordinates(self, x, y):
        """Return closest image pixel coordinates"""
        return self.get_closest_indexes(x, y)

    def get_coordinates_label(self, xc, yc):
        title = self.title().text()
        z = self.get_data(xc, yc)
        return "%s:<br>x = %d<br>y = %d<br>z = %g" % (title, xc, yc, z)

    def set_background_color(self, qcolor):
        #mask = np.uint32(255*self.imageparam.alpha+0.5).clip(0,255) << 24
        self.bg_qcolor = qcolor
        a, b, _bg, cmap = self.lut
        if qcolor is None:
            self.lut = (a, b, None, cmap)
        else:
            self.lut = (a, b, np.uint32(QColor(qcolor).rgb() & 0xffffff), cmap)

    def set_color_map(self, name_or_table):
        if name_or_table is self.cmap_table:
            # This avoids rebuilding the LUT all the time
            return
        if is_text_string(name_or_table):
            table = get_cmap(name_or_table)
        else:
            table = name_or_table
        self.cmap_table = table
        self.cmap = table.colorTable(FULLRANGE)
        cmap_a = self.lut[3]
        alpha = self.imageparam.alpha
        alpha_mask = self.imageparam.alpha_mask
        for i in range(LUT_SIZE):
            if alpha_mask:
                pix_alpha = alpha*(i/float(LUT_SIZE-1))
            else:
                pix_alpha = alpha
            alpha_channel = np.uint32(255*pix_alpha+0.5).clip(0, 255) << 24
            cmap_a[i] = np.uint32((table.rgb(FULLRANGE, i/LUT_MAX))
                                  & 0xffffff) | alpha_channel
        plot = self.plot()
        if plot:
            plot.update_colormap_axis(self)

    def get_color_map(self):
        return self.cmap_table

    def get_color_map_name(self):
        return get_cmap_name(self.get_color_map())

    def set_interpolation(self, interp_mode, size=None):
        """
        Set image interpolation mode

        interp_mode: INTERP_NEAREST, INTERP_LINEAR, INTERP_AA
        size (integer): (for anti-aliasing only) AA matrix size
        """
        if interp_mode in (INTERP_NEAREST, INTERP_LINEAR):
            self.interpolate = (interp_mode,)
        if interp_mode == INTERP_AA:
            aa = np.ones((size, size), self.data.dtype)
            self.interpolate = (interp_mode, aa)

    def get_interpolation(self):
        """Get interpolation mode"""
        return self.interpolate

    def set_lut_range(self, lut_range):
        """
        Set LUT transform range
        *lut_range* is a tuple: (min, max)
        """
        self.min, self.max = lut_range
        _a, _b, bg, cmap = self.lut
        if self.max == self.min:
            self.lut = (LUT_MAX, self.min, bg, cmap)
        else:
            fmin, fmax = float(self.min), float(self.max)  # avoid overflows
            self.lut = (LUT_MAX/(fmax-fmin), -LUT_MAX*fmin/(fmax-fmin),
                        bg, cmap)

    def get_lut_range(self):
        """Return the LUT transform range tuple: (min, max)"""
        return self.min, self.max

    def get_lut_range_full(self):
        """Return full dynamic range"""
        return _nanmin(self.data), _nanmax(self.data)

    def get_lut_range_max(self):
        """Get maximum range for this dataset"""
        kind = self.data.dtype.kind
        if kind in np.typecodes['AllFloat']:
            info = np.finfo(self.data.dtype)
        else:
            info = np.iinfo(self.data.dtype)
        return info.min, info.max

    def update_border(self):
        """Update image border rectangle to fit image shape"""
        bounds = self.boundingRect().getCoords()
        self.border_rect.set_rect(*bounds)

    def draw_border(self, painter, xMap, yMap, canvasRect):
        """Draw image border rectangle"""
        self.border_rect.draw(painter, xMap, yMap, canvasRect)

    def draw_image(self, painter, canvasRect, src_rect, dst_rect, xMap, yMap):
        """
        Draw image with painter on canvasRect
        
        .. warning::

            `src_rect` and `dst_rect` are coordinates tuples 
            (xleft, ytop, xright, ybottom)
        """
        dest = _scale_rect(self.data, src_rect, self._offscreen, dst_rect,
                           self.lut, self.interpolate)
        qrect = QRectF(QPointF(dest[0], dest[1]), QPointF(dest[2], dest[3]))
        painter.drawImage(qrect, self._image, qrect)

    def export_roi(self, src_rect, dst_rect, dst_image,
                   apply_lut=False, apply_interpolation=False,
                   original_resolution=False):
        """Export Region Of Interest to array"""
        if apply_lut:
            a, b, _bg, _cmap = self.lut
        else:
            a, b = 1., 0.
        interp = self.interpolate if apply_interpolation else (INTERP_NEAREST,)
        _scale_rect(self.data, src_rect, dst_image, dst_rect,
                    (a, b, None), interp)

    #---- QwtPlotItem API -----------------------------------------------------
    def draw(self, painter, xMap, yMap, canvasRect):
        x1, y1, x2, y2 = canvasRect.getCoords()
        i1, i2 = xMap.invTransform(x1), xMap.invTransform(x2)
        j1, j2 = yMap.invTransform(y1), yMap.invTransform(y2)

        xl, yt, xr, yb = self.boundingRect().getCoords()
        dest = (xMap.transform(xl), yMap.transform(yt),
                xMap.transform(xr)+1, yMap.transform(yb)+1)

        W = canvasRect.right()
        H = canvasRect.bottom()
        if self._offscreen.shape != (H, W):
            self._offscreen = np.empty((H, W), np.uint32)
            self._image = QImage(self._offscreen, W, H, QImage.Format_ARGB32)
            self._image.ndarray = self._offscreen
            self.notify_new_offscreen()
        self.draw_image(painter, canvasRect, (i1, j1, i2, j2),
                        dest, xMap, yMap)
        self.draw_border(painter, xMap, yMap, canvasRect)

    def boundingRect(self):
        return self.bounds

    def notify_new_offscreen(self):
        # callback for those derived classes who need it
        pass

    def setVisible(self, enable):
        if not enable:
            self.unselect() # when hiding item, unselect it
        if enable:
            self.border_rect.show()
        else:
            self.border_rect.hide()
        QwtPlotItem.setVisible(self, enable)

    #---- IBasePlotItem API ----------------------------------------------------
    def types(self):
        return (IImageItemType, IVoiImageItemType, IColormapImageItemType,
                ITrackableItemType, ICSImageItemType, IExportROIImageItemType,
                IStatsImageItemType, IStatsImageItemType)

    def set_readonly(self, state):
        """Set object readonly state"""
        self._readonly = state

    def is_readonly(self):
        """Return object readonly state"""
        return self._readonly

    def set_private(self, state):
        """Set object as private"""
        self._private = state

    def is_private(self):
        """Return True if object is private"""
        return self._private

    def select(self):
        """Select item"""
        self.selected = True
        self.border_rect.select()

    def unselect(self):
        """Unselect item"""
        self.selected = False
        self.border_rect.unselect()

    def is_empty(self):
        """Return True if item data is empty"""
        return self.data is None or self.data.size == 0

    def set_selectable(self, state):
        """Set item selectable state"""
        self._can_select = state

    def set_resizable(self, state):
        """Set item resizable state
        (or any action triggered when moving an handle, e.g. rotation)"""
        self._can_resize = state

    def set_movable(self, state):
        """Set item movable state"""
        self._can_move = state

    def set_rotatable(self, state):
        """Set item rotatable state"""
        self._can_rotate = state

    def can_select(self):
        return self._can_select
    def can_resize(self):
        return self._can_resize
    def can_move(self):
        return self._can_move
    def can_rotate(self):
        return self._can_rotate

    def hit_test(self, pos):
        plot = self.plot()
        ax = self.xAxis()
        ay = self.yAxis()
        return self.border_rect.poly_hit_test(plot, ax, ay, pos)

    def update_item_parameters(self):
        pass

    def get_item_parameters(self, itemparams):
        itemparams.add("ShapeParam", self, self.border_rect.shapeparam)

    def set_item_parameters(self, itemparams):
        self.border_rect.set_item_parameters(itemparams)

    def move_local_point_to(self, handle, pos, ctrl=None):
        """Move a handle as returned by hit_test to the new position pos
        ctrl: True if <Ctrl> button is being pressed, False otherwise"""
        pass

    def move_local_shape(self, old_pos, new_pos):
        """Translate the shape such that old_pos becomes new_pos
        in canvas coordinates"""
        pass

    def move_with_selection(self, delta_x, delta_y):
        """
        Translate the shape together with other selected items
        delta_x, delta_y: translation in plot coordinates
        """
        pass

    #---- IBaseImageItem API --------------------------------------------------
    def can_setfullscale(self):
        return True
    def can_sethistogram(self):
        return False

    def get_histogram(self, nbins):
        """interface de IHistDataSource"""
        if self.data is None:
            return [0,], [0, 1]
        if self.histogram_cache is None \
           or nbins != self.histogram_cache[0].shape[0]:
            #from guidata.utils import tic, toc
            if True:
                #tic("histo1")
                res = np.histogram(self.data, nbins)
                #toc("histo1")
            else:
                #TODO: _histogram is faster, but caching is buggy
                # in this version
                #tic("histo2")
                _min = _nanmin(self.data)
                _max = _nanmax(self.data)
                if self.data.dtype in (np.float64, np.float32):
                    bins = np.unique(np.array(np.linspace(_min, _max, nbins+1),
                                              dtype=self.data.dtype))
                else:
                    bins = np.arange(_min, _max+2,
                                     dtype=self.data.dtype)
                res2 = np.zeros((bins.size+1,), np.uint32)
                _histogram(self.data.flatten(), bins, res2)
                #toc("histo2")
                res = res2[1:-1], bins
            self.histogram_cache = res
        else:
            res = self.histogram_cache
        return res

    def __process_cross_section(self, ydata, apply_lut):
        if apply_lut:
            a, b, bg, cmap = self.lut
            return (ydata*a+b).clip(0, LUT_MAX)
        else:
            return ydata

    def get_stats(self, x0, y0, x1, y1):
        """Return formatted string with stats on image rectangular area
        (output should be compatible with AnnotatedShape.get_infos)"""
        ix0, iy0, ix1, iy1 = self.get_closest_index_rect(x0, y0, x1, y1)
        data = self.data[iy0:iy1, ix0:ix1]
        xfmt = self.imageparam.xformat
        yfmt = self.imageparam.yformat
        zfmt = self.imageparam.zformat
        return "<br>".join([
                            "<b>%s</b>" % self.imageparam.label,
                            "%sx%s %s" % (self.data.shape[1],
                                           self.data.shape[0],
                                           str(self.data.dtype)),
                            "",
                            "%s ≤ x ≤ %s" % (xfmt % x0, xfmt % x1),
                            "%s ≤ y ≤ %s" % (yfmt % y0, yfmt % y1),
                            "%s ≤ z ≤ %s" % (zfmt % data.min(),
                                              zfmt % data.max()),
                            "‹z› = " + zfmt % data.mean(),
                            "σ(z) = " + zfmt % data.std(),
                            ])

    def get_xsection(self, y0, apply_lut=False):
        """Return cross section along x-axis at y=y0"""
        _ix, iy = self.get_closest_indexes(0, y0)
        return (self.get_x_values(0, self.data.shape[1]),
                self.__process_cross_section(self.data[iy,:], apply_lut))

    def get_ysection(self, x0, apply_lut=False):
        """Return cross section along y-axis at x=x0"""
        ix, _iy = self.get_closest_indexes(x0, 0)
        return (self.get_y_values(0, self.data.shape[0]),
                self.__process_cross_section(self.data[:, ix], apply_lut))

    def get_average_xsection(self, x0, y0, x1, y1, apply_lut=False):
        """Return average cross section along x-axis"""
        ix0, iy0, ix1, iy1 = self.get_closest_index_rect(x0, y0, x1, y1)
        ydata = self.data[iy0:iy1, ix0:ix1].mean(axis=0)
        return (self.get_x_values(ix0, ix1),
                self.__process_cross_section(ydata, apply_lut))

    def get_average_ysection(self, x0, y0, x1, y1, apply_lut=False):
        """Return average cross section along y-axis"""
        ix0, iy0, ix1, iy1 = self.get_closest_index_rect(x0, y0, x1, y1)
        ydata = self.data[iy0:iy1, ix0:ix1].mean(axis=1)
        return (self.get_y_values(iy0, iy1),
                self.__process_cross_section(ydata, apply_lut))

assert_interfaces_valid(BaseImageItem)


#==============================================================================
# Raw Image item (image item without scale)
#==============================================================================
class RawImageItem(BaseImageItem):
    """
    Construct a simple image item
    
        * data: 2D NumPy array
        * param (optional): image parameters
          (:py:class:`guiqwt.styles.RawImageParam` instance)
    """
    __implements__ = (IBasePlotItem, IBaseImageItem, IHistDataSource,
                      IVoiImageItemType, ISerializableType)
    #---- BaseImageItem API ---------------------------------------------------
    def get_default_param(self):
        """Return instance of the default imageparam DataSet"""
        return RawImageParam(_("Image"))

    #---- Serialization methods -----------------------------------------------
    def __reduce__(self):
        fname = self.get_filename()
        if fname is None:
            fn_or_data = self.data
        else:
            fn_or_data = fname
        state = self.imageparam, self.get_lut_range(), fn_or_data, self.z()
        res = ( self.__class__, (), state )
        return res

    def __setstate__(self, state):
        param, lut_range, fn_or_data, z = state
        self.imageparam = param
        if is_text_string(fn_or_data):
            self.set_filename(fn_or_data)
            self.load_data()
        elif fn_or_data is not None: # should happen only with previous API
            self.set_data(fn_or_data)
        self.set_lut_range(lut_range)
        self.setZ(z)
        self.imageparam.update_image(self)

    def serialize(self, writer):
        """Serialize object to HDF5 writer"""
        fname = self.get_filename()
        load_from_fname = fname is not None
        data = None if load_from_fname else self.data
        writer.write(load_from_fname, group_name='load_from_fname')
        writer.write(fname, group_name='fname')
        writer.write(data, group_name='Zdata')
        writer.write(self.get_lut_range(), group_name='lut_range')
        writer.write(self.z(), group_name='z')
        self.imageparam.update_param(self)
        writer.write(self.imageparam, group_name='imageparam')
    
    def deserialize(self, reader):
        """Deserialize object from HDF5 reader"""
        lut_range = reader.read(group_name='lut_range')
        if reader.read(group_name='load_from_fname'):
            self.set_filename(reader.read(group_name='fname',
                                          func=reader.read_unicode))
            self.load_data()
        else:
            data = reader.read(group_name='Zdata', func=reader.read_array)
            self.set_data(data)
        self.set_lut_range(lut_range)
        self.setZ(reader.read('z'))
        self.imageparam = self.get_default_param()
        reader.read('imageparam', instance=self.imageparam)
        self.imageparam.update_image(self)
    
    #---- Public API ----------------------------------------------------------
    def load_data(self, lut_range=None):
        """
        Load data from *filename* and eventually apply specified lut_range
        *filename* has been set using method 'set_filename'
        """
        data = io.imread(self.get_filename(), to_grayscale=True)
        self.set_data(data, lut_range=lut_range)

    def set_data(self, data, lut_range=None):
        """
        Set Image item data
        
            * data: 2D NumPy array
            * lut_range: LUT range -- tuple (levelmin, levelmax)
        """
        if lut_range is not None:
            _min, _max = lut_range
        else:
            _min, _max = _nanmin(data), _nanmax(data)

        self.data = data
        self.histogram_cache = None
        self.update_bounds()
        self.update_border()
        self.set_lut_range([_min, _max])

    def update_bounds(self):
        if self.data is None:
            return
        self.bounds = QRectF(0, 0, self.data.shape[1], self.data.shape[0])

    #---- IBasePlotItem API ---------------------------------------------------
    def types(self):
        return (IImageItemType, IVoiImageItemType, IColormapImageItemType,
                ITrackableItemType, ICSImageItemType, ISerializableType,
                IExportROIImageItemType, IStatsImageItemType)

    def update_item_parameters(self):
        self.imageparam.update_param(self)

    def get_item_parameters(self, itemparams):
        BaseImageItem.get_item_parameters(self, itemparams)
        self.update_item_parameters()
        itemparams.add("ImageParam", self, self.imageparam)

    def set_item_parameters(self, itemparams):
        update_dataset(self.imageparam, itemparams.get("ImageParam"),
                       visible_only=True)
        self.imageparam.update_image(self)
        BaseImageItem.set_item_parameters(self, itemparams)

    #---- IBaseImageItem API --------------------------------------------------
    def can_setfullscale(self):
        return True
    def can_sethistogram(self):
        return True

assert_interfaces_valid(RawImageItem)


#==============================================================================
# Image item
#==============================================================================
class ImageItem(RawImageItem):
    """
    Construct a simple image item
    
        * data: 2D NumPy array
        * param (optional): image parameters
          (:py:class:`guiqwt.styles.ImageParam` instance)
    """
    __implements__ = (IBasePlotItem, IBaseImageItem, IHistDataSource,
                      IVoiImageItemType, IExportROIImageItemType)
    def __init__(self, data=None, param=None):
        self.xmin = None
        self.xmax = None
        self.ymin = None
        self.ymax = None
        super(ImageItem, self).__init__(data=data, param=param)

    #---- BaseImageItem API ---------------------------------------------------
    def get_default_param(self):
        """Return instance of the default imageparam DataSet"""
        return ImageParam(_("Image"))

    #---- Serialization methods -----------------------------------------------
    def __reduce__(self):
        fname = self.get_filename()
        if fname is None:
            fn_or_data = self.data
        else:
            fn_or_data = fname
        (xmin, xmax), (ymin, ymax) = self.get_xdata(), self.get_ydata()
        state = (self.imageparam, self.get_lut_range(), fn_or_data, self.z(),
                 xmin, xmax, ymin, ymax)
        res = ( self.__class__, (), state )
        return res

    def __setstate__(self, state):
        param, lut_range, fn_or_data, z, xmin, xmax, ymin, ymax = state
        self.set_xdata(xmin, xmax)
        self.set_ydata(ymin, ymax)
        self.imageparam = param
        if is_text_string(fn_or_data):
            self.set_filename(fn_or_data)
            self.load_data()
        elif fn_or_data is not None: # should happen only with previous API
            self.set_data(fn_or_data)
        self.set_lut_range(lut_range)
        self.setZ(z)
        self.imageparam.update_image(self)

    def serialize(self, writer):
        """Serialize object to HDF5 writer"""
        super(ImageItem, self).serialize(writer)
        (xmin, xmax), (ymin, ymax) = self.get_xdata(), self.get_ydata()
        writer.write(xmin, group_name='xmin')
        writer.write(xmax, group_name='xmax')
        writer.write(ymin, group_name='ymin')
        writer.write(ymax, group_name='ymax')
    
    def deserialize(self, reader):
        """Deserialize object from HDF5 reader"""
        super(ImageItem, self).deserialize(reader)
        for attr in ('xmin', 'xmax', 'ymin', 'ymax'):
            # Note: do not be tempted to write the symetric code in `serialize`
            # because calling `get_xdata` and `get_ydata` is necessary
            setattr(self, attr, reader.read(attr, func=reader.read_float))
    
    #---- Public API ----------------------------------------------------------
    def get_xdata(self):
        """Return (xmin, xmax)"""
        xmin, xmax = self.xmin, self.xmax
        if xmin is None:
            xmin = 0.
        if xmax is None:
            xmax = self.data.shape[1]
        return xmin, xmax

    def get_ydata(self):
        """Return (ymin, ymax)"""
        ymin, ymax = self.ymin, self.ymax
        if ymin is None:
            ymin = 0.
        if ymax is None:
            ymax = self.data.shape[0]
        return ymin, ymax

    def set_xdata(self, xmin=None, xmax=None):
        self.xmin, self.xmax = xmin, xmax

    def set_ydata(self, ymin=None, ymax=None):
        self.ymin, self.ymax = ymin, ymax

    def update_bounds(self):
        if self.data is None:
            return
        (xmin, xmax), (ymin, ymax) = self.get_xdata(), self.get_ydata()
        self.bounds = QRectF(QPointF(xmin, ymin), QPointF(xmax, ymax))

    #---- BaseImageItem API ---------------------------------------------------
    def get_pixel_coordinates(self, xplot, yplot):
        """Return (image) pixel coordinates (from plot coordinates)"""
        (xmin, xmax), (ymin, ymax) = self.get_xdata(), self.get_ydata()
        xpix = self.data.shape[1]*(xplot-xmin)/float(xmax-xmin)
        ypix = self.data.shape[0]*(yplot-ymin)/float(ymax-ymin)
        return xpix, ypix

    def get_plot_coordinates(self, xpixel, ypixel):
        """Return plot coordinates (from image pixel coordinates)"""
        (xmin, xmax), (ymin, ymax) = self.get_xdata(), self.get_ydata()
        xplot = xmin+(xmax-xmin)*xpixel/float(self.data.shape[1])
        yplot = ymin+(ymax-ymin)*ypixel/float(self.data.shape[0])
        return xplot, yplot

    def get_x_values(self, i0, i1):
        xmin, xmax = self.get_xdata()
        xfunc = lambda index: xmin+(xmax-xmin)*index/float(self.data.shape[1])
        return np.linspace(xfunc(i0), xfunc(i1), i1-i0)

    def get_y_values(self, j0, j1):
        ymin, ymax = self.get_ydata()
        yfunc = lambda index: ymin+(ymax-ymin)*index/float(self.data.shape[0])
        return np.linspace(yfunc(j0), yfunc(j1), j1-j0)

    def get_closest_coordinates(self, x, y):
        """Return closest image pixel coordinates"""
        (xmin, xmax), (ymin, ymax) = self.get_xdata(), self.get_ydata()
        i, j = self.get_closest_indexes(x, y)
        xpix = np.linspace(xmin, xmax, self.data.shape[1]+1)
        ypix = np.linspace(ymin, ymax, self.data.shape[0]+1)
        return xpix[i], ypix[j]

    def _rescale_src_rect(self, src_rect):
        sxl, syt, sxr, syb = src_rect
        xl, yt, xr, yb = self.boundingRect().getCoords()
        H, W = self.data.shape[:2]
        x0 = W*(sxl-xl)/(xr-xl)
        x1 = W*(sxr-xl)/(xr-xl)
        y0 = H*(syt-yt)/(yb-yt)
        y1 = H*(syb-yt)/(yb-yt)
        return x0, y0, x1, y1

    def draw_image(self, painter, canvasRect, src_rect, dst_rect, xMap, yMap):
        if self.data is None:
            return
        src2 = self._rescale_src_rect(src_rect)
        dst_rect = tuple([int(i) for i in dst_rect])
        dest = _scale_rect(self.data, src2, self._offscreen, dst_rect,
                           self.lut, self.interpolate)
        qrect = QRectF(QPointF(dest[0], dest[1]), QPointF(dest[2], dest[3]))
        painter.drawImage(qrect, self._image, qrect)

    def export_roi(self, src_rect, dst_rect, dst_image,
                   apply_lut=False, apply_interpolation=False,
                   original_resolution=False):
        """Export Region Of Interest to array"""
        if apply_lut:
            a, b, _bg, _cmap = self.lut
        else:
            a, b = 1., 0.
        interp = self.interpolate if apply_interpolation else (INTERP_NEAREST,)
        _scale_rect(self.data, self._rescale_src_rect(src_rect),
                    dst_image, dst_rect, (a, b, None), interp)

assert_interfaces_valid(ImageItem)


#==============================================================================
# QuadGrid item
#==============================================================================
class QuadGridItem(RawImageItem):
    """
    Construct a QuadGrid image
    
        * X, Y, Z: A structured grid of quadrilaterals
          each quad is defined by (X[i], Y[i]), (X[i], Y[i+1]),
          (X[i+1], Y[i+1]), (X[i+1], Y[i])
        * param (optional): image parameters (ImageParam instance)
    """
    __implements__ = (IBasePlotItem, IBaseImageItem, IHistDataSource,
                      IVoiImageItemType)
    def __init__(self, X, Y, Z, param=None):
        assert X is not None
        assert Y is not None
        assert Z is not None
        self.X = X
        self.Y = Y
        assert X.shape == Y.shape
        assert Z.shape == X.shape
        super(QuadGridItem, self).__init__(Z, param)
        self.set_data(Z)
        self.grid = 1
        self.interpolate = (0, 0.5, 0.5)
        self.imageparam.update_image(self)

    #---- BaseImageItem API ---------------------------------------------------
    def get_default_param(self):
        """Return instance of the default imageparam DataSet"""
        return QuadGridParam(_("Quadrilaterals"))

    def types(self):
        return (IImageItemType, IVoiImageItemType, IColormapImageItemType,
                ITrackableItemType)

    def update_bounds(self):
        xmin = self.X.min()
        xmax = self.X.max()
        ymin = self.Y.min()
        ymax = self.Y.max()
        self.bounds = QRectF(xmin, ymin, xmax-xmin, ymax-ymin)

    def set_data(self, data, X=None, Y=None, lut_range=None):
        """
        Set Image item data
        
            * data: 2D NumPy array
            * lut_range: LUT range -- tuple (levelmin, levelmax)
        """
        if lut_range is not None:
            _min, _max = lut_range
        else:
            _min, _max = _nanmin(data), _nanmax(data)

        self.data = data
        self.histogram_cache = None
        if X is not None:
            assert Y is not None
            self.X = X
            self.Y = Y
        self.update_bounds()
        self.update_border()
        self.set_lut_range([_min, _max])

    def draw_image(self, painter, canvasRect, src_rect, dst_rect, xMap, yMap):
        self._offscreen[...] = np.uint32(0)
        dest = _scale_quads(self.X, self.Y, self.data, src_rect,
                            self._offscreen, dst_rect,
                            self.lut, self.interpolate,
                            self.grid)
        qrect = QRectF(QPointF(dest[0], dest[1]), QPointF(dest[2], dest[3]))
        painter.drawImage(qrect, self._image, qrect)
        xl, yt, xr, yb = dest
        self._offscreen[yt:yb, xl:xr] = 0

    def notify_new_offscreen(self):
        # we always ensure the offscreen is clean before drawing
        self._offscreen[...] = 0

assert_interfaces_valid(QuadGridItem)


#==============================================================================
# Image with a custom linear transform
#==============================================================================
class TrImageItem(RawImageItem):
    """
    Construct a transformable image item
    
        * data: 2D NumPy array
        * param (optional): image parameters
          (:py:class:`guiqwt.styles.TrImageParam` instance)
    """
    __implements__ = (IBasePlotItem, IBaseImageItem, IExportROIImageItemType)
    _can_select = True
    _can_resize = True
    _can_rotate = True
    _can_move = True
    def __init__(self, data=None, param=None):
        self.tr = np.eye(3, dtype=float)
        self.itr = np.eye(3, dtype=float)
        self.points = np.array([ [0, 0, 2, 2],
                                 [0, 2, 2, 0],
                                 [1, 1, 1, 1] ], float)
        super(TrImageItem, self).__init__(data, param)

    #---- BaseImageItem API ---------------------------------------------------
    def get_default_param(self):
        """Return instance of the default imageparam DataSet"""
        return TrImageParam(_("Image"))

    #---- Public API ----------------------------------------------------------
    def set_transform(self, x0, y0, angle, dx=1.0, dy=1.0,
                      hflip=False, vflip=False):
        self.imageparam.set_transform(x0, y0, angle, dx, dy, hflip, vflip)
        if self.data is None:
            return
        ni, nj = self.data.shape
        rot = rotate(-angle)
        tr1 = translate(nj/2.+0.5, ni/2.+0.5)
        xflip = -1. if hflip else 1.
        yflip = -1. if vflip else 1.
        sc = scale(xflip/dx, yflip/dy)
        tr2 = translate(-x0, -y0)
        self.tr = tr1*sc*rot*tr2
        self.itr = self.tr.I
        self.compute_bounds()

    def get_transform(self):
        return self.imageparam.get_transform()

    def debug_transform(self, pt):
        x0, y0, angle, dx, dy, _hflip, _vflip = self.get_transform()
        ni, nj = self.data.shape
        rot = rotate(-angle)
        tr1 = translate(ni/2.+0.5, nj/2.+0.5)
        sc = scale(dx, dy)
        tr2 = translate(-x0, -y0)
        p1 = tr1.I*pt
        p2 = rot.I*pt
        p3 = sc.I*pt
        p4 = tr2.I*pt
        print("src=", pt.T)
        print("tr1:", p1.T)
        print("tr1+rot:", p2.T)
        print("tr1+rot+sc:", p3.T)
        print("tr1+rot+tr2:", p4.T)

    def set_crop(self, left, top, right, bottom):
        self.imageparam.set_crop(left, top, right, bottom)

    def get_crop(self):
        return self.imageparam.get_crop()

    def get_crop_coordinates(self):
        """Return crop rectangle coordinates"""
        tpos = np.array(np.dot(self.itr, self.points))
        xmin, ymin, _ = tpos.min(axis=1).flatten()
        xmax, ymax, _ = tpos.max(axis=1).flatten()
        left, top, right, bottom = self.imageparam.get_crop()
        return (xmin+left, ymin+top, xmax-right, ymax-bottom)

    def compute_bounds(self):
        x0, y0, x1, y1 = self.get_crop_coordinates()
        self.bounds = QRectF(QPointF(x0, y0), QPointF(x1, y1))
        self.update_border()

    #--- RawImageItem API -----------------------------------------------------
    def set_data(self, data, lut_range=None):
        RawImageItem.set_data(self, data, lut_range)
        ni, nj = self.data.shape
        self.points = np.array([[0,  0, nj, nj],
                                [0, ni, ni,  0],
                                [1,  1,  1,  1]], float)
        self.compute_bounds()

    #--- BaseImageItem API ----------------------------------------------------
    def get_filter(self, filterobj, filterparam):
        """Provides a filter object over this image's content"""
        raise NotImplementedError
        #TODO: Implement TrImageFilterItem
#        return TrImageFilterItem(self, filterobj, filterparam)

    def get_pixel_coordinates(self, xplot, yplot):
        """Return (image) pixel coordinates (from plot coordinates)"""
        v = self.tr*colvector(xplot, yplot)
        xpixel, ypixel, _ = v[:, 0]
        return xpixel, ypixel

    def get_plot_coordinates(self, xpixel, ypixel):
        """Return plot coordinates (from image pixel coordinates)"""
        v0 = self.itr*colvector(xpixel, ypixel)
        xplot, yplot, _ = v0[:, 0].A.ravel()
        return xplot, yplot

    def get_x_values(self, i0, i1):
        v0 = self.itr*colvector(i0, 0)
        x0, _y0, _ = v0[:, 0].A.ravel()
        v1 = self.itr*colvector(i1, 0)
        x1, _y1, _ = v1[:, 0].A.ravel()
        return np.linspace(x0, x1, i1-i0)

    def get_y_values(self, j0, j1):
        v0 = self.itr*colvector(0, j0)
        _x0, y0, _ = v0[:, 0].A.ravel()
        v1 = self.itr*colvector(0, j1)
        _x1, y1, _ = v1[:, 0].A.ravel()
        return np.linspace(y0, y1, j1-j0)

    def get_closest_coordinates(self, x, y):
        """Return closest image pixel coordinates"""
        xi, yi = self.get_closest_indexes(x, y)
        v = self.itr*colvector(xi, yi)
        x, y, _ = v[:, 0].A.ravel()
        return x, y

    def update_border(self):
        tpos = np.dot(self.itr, self.points)
        self.border_rect.set_points(tpos.T[:, :2])

    def draw_border(self, painter, xMap, yMap, canvasRect):
        self.border_rect.draw(painter, xMap, yMap, canvasRect)

    def draw_image(self, painter, canvasRect, src_rect, dst_rect, xMap, yMap):
        W = canvasRect.width()
        H = canvasRect.height()
        if W <= 1 or H <= 1:
            return

        x0, y0, x1, y1 = src_rect
        cx = canvasRect.left()
        cy = canvasRect.top()
        sx = (x1-x0)/(W-1)
        sy = (y1-y0)/(H-1)
        # tr1 = tr(x0,y0)*scale(sx,sy)*tr(-cx,-cy)
        tr = np.matrix( [[sx,  0, x0-cx*sx],
                         [ 0, sy, y0-cy*sy],
                         [ 0,  0, 1]], float)
        mat = self.tr*tr

        dst_rect = tuple([int(i) for i in dst_rect])
        dest = _scale_tr(self.data, mat, self._offscreen, dst_rect,
                         self.lut, self.interpolate)
        qrect = QRectF(QPointF(dest[0], dest[1]), QPointF(dest[2], dest[3]))
        painter.drawImage(qrect, self._image, qrect)

    def export_roi(self, src_rect, dst_rect, dst_image,
                   apply_lut=False, apply_interpolation=False,
                   original_resolution=False):
        """Export Region Of Interest to array"""
        if apply_lut:
            a, b, _bg, _cmap = self.lut
        else:
            a, b = 1., 0.

        xs0, ys0, xs1, ys1 = src_rect
        xd0, yd0, xd1, yd1 = dst_rect

        if original_resolution:
            _t1, _t2, _t3, xscale, yscale, _t4, _t5 = self.get_transform()
        else:
            xscale, yscale = (xs1-xs0)/float(xd1-xd0), (ys1-ys0)/float(yd1-yd0)

        mat = self.tr*( translate(xs0, ys0)*scale(xscale, yscale) )

        x0, y0, x1, y1 = self.get_crop_coordinates()
        xd0 = max([xd0, xd0+int((x0-xs0)/xscale)])
        yd0 = max([yd0, yd0+int((y0-ys0)/xscale)])
        xd1 = min([xd1, xd1+int((x1-xs1)/xscale)])
        yd1 = min([yd1, yd1+int((y1-ys1)/xscale)])
        dst_rect = xd0, yd0, xd1, yd1

        interp = self.interpolate if apply_interpolation else (INTERP_NEAREST,)
        _scale_tr(self.data, mat, dst_image, dst_rect, (a, b, None), interp)

    #---- IBasePlotItem API ---------------------------------------------------
    def move_local_point_to(self, handle, pos, ctrl=None):
        """Move a handle as returned by hit_test to the new position pos
        ctrl: True if <Ctrl> button is being pressed, False otherwise"""
        x0, y0, angle, dx, dy, hflip, vflip = self.get_transform()
        nx, ny = canvas_to_axes(self, pos)
        handles = self.itr*self.points
        p0 = colvector(nx, ny)
        #self.debug_transform(p0)
        center = handles.sum(axis=1)/4
        vec0 = handles[:, handle] - center
        vec1 = p0 - center
        a0 = np.arctan2(vec0[1, 0], vec0[0, 0])
        a1 = np.arctan2(vec1[1, 0], vec1[0, 0])
        if self.can_rotate():
            # compute angles
            angle += a1-a0
        if self.can_resize():
            # compute pixel size
            zoom = np.linalg.norm(vec1)/np.linalg.norm(vec0)
            dx = zoom*dx
            dy = zoom*dy
        self.set_transform(x0, y0, angle, dx, dy, hflip, vflip)

    def move_local_shape(self, old_pos, new_pos):
        """Translate the shape such that old_pos becomes new_pos
        in canvas coordinates"""
        x0, y0, angle, dx, dy, hflip, vflip = self.get_transform()
        nx, ny = canvas_to_axes(self, new_pos)
        ox, oy = canvas_to_axes(self, old_pos)
        self.set_transform(x0+nx-ox, y0+ny-oy, angle, dx, dy, hflip, vflip)
        if self.plot():
            self.plot().SIG_ITEM_MOVED.emit(self, ox, oy, nx, ny)

    def move_with_selection(self, delta_x, delta_y):
        """
        Translate the shape together with other selected items
        delta_x, delta_y: translation in plot coordinates
        """
        x0, y0, angle, dx, dy, hflip, vflip = self.get_transform()
        self.set_transform(x0+delta_x, y0+delta_y, angle, dx, dy, hflip, vflip)

assert_interfaces_valid(TrImageItem)


def assemble_imageitems(items, src_qrect, destw, desth, align=None,
                        add_images=False, apply_lut=False,
                        apply_interpolation=False,
                        original_resolution=False):
    """
    Assemble together image items in qrect (`QRectF` object)
    and return resulting pixel data
    
    .. warning::

        Does not support `XYImageItem` objects
    """
    # align width to 'align' bytes
    if align is not None:
        print("guiqwt.image.assemble_imageitems: since v2.2, "\
                            "the `align` option is ignored", file=sys.stderr)
    align = 1  #XXX: byte alignment is disabled until further notice!
    aligned_destw = int(align*((int(destw)+align-1)/align))
    aligned_desth = int(desth*aligned_destw/destw)

    try:
        output = np.zeros((aligned_desth, aligned_destw), np.float32)
    except ValueError:
        raise MemoryError
    if not add_images:
        dst_image = output

    dst_rect = (0, 0, aligned_destw, aligned_desth)
    
    src_rect = list(src_qrect.getCoords())
    # The source QRect is generally coming from a rectangle shape which is 
    # adjusted to fit a given ROI on the image. So the rectangular area is 
    # aligned with image pixel edges: to avoid any rounding error, we reduce
    # the rectangle area size by one half of a pixel, so that the area is now 
    # aligned with the center of image pixels.
    pixel_width = src_qrect.width()/float(destw)
    pixel_height = src_qrect.height()/float(desth)
    src_rect[0] += .5*pixel_width
    src_rect[1] += .5*pixel_height
    src_rect[2] -= .5*pixel_width
    src_rect[3] -= .5*pixel_height

    for it in sorted(items, key=lambda obj: -obj.z()):
        if it.isVisible() and src_qrect.intersects(it.boundingRect()):
            if add_images:
                dst_image = np.zeros_like(output)
            it.export_roi(src_rect=src_rect, dst_rect=dst_rect,
                          dst_image=dst_image, apply_lut=apply_lut,
                          apply_interpolation=apply_interpolation,
                          original_resolution=original_resolution)
            if add_images:
                output += dst_image
    return output

def get_plot_qrect(plot, p0, p1):
    """
    Return `QRectF` rectangle object in plot coordinates
    from top-left and bottom-right `QPointF` objects in canvas coordinates
    """
    ax, ay = plot.X_BOTTOM, plot.Y_LEFT
    p0x, p0y = plot.invTransform(ax, p0.x()), plot.invTransform(ay, p0.y())
    p1x, p1y = plot.invTransform(ax, p1.x()+1), plot.invTransform(ay, p1.y()+1)
    return QRectF(p0x, p0y, p1x-p0x, p1y-p0y)

def get_items_in_rectangle(plot, p0, p1, item_type=None):
    """Return items which bounding rectangle intersects (p0, p1)
    item_type: default is `IExportROIImageItemType`"""
    if item_type is None:
        item_type = IExportROIImageItemType
    items = plot.get_items(item_type=IExportROIImageItemType)
    src_qrect = get_plot_qrect(plot, p0, p1)
    return [it for it in items if src_qrect.intersects(it.boundingRect())]

def compute_trimageitems_original_size(items, src_w, src_h):
    """Compute `TrImageItem` original size from max dx and dy"""
    trparams = [item.get_transform() for item in items
                if isinstance(item, TrImageItem)]
    if trparams:
        dx_max = max([dx for _x, _y, _angle, dx, _dy, _hf, _vf in trparams])
        dy_max = max([dy for _x, _y, _angle, _dx, dy, _hf, _vf in trparams])
        return src_w/dx_max, src_h/dy_max
    else:
        return src_w, src_h

def get_image_from_qrect(plot, p0, p1, src_size=None,
                         adjust_range=None, item_type=None,
                         apply_lut=False, apply_interpolation=False,
                         original_resolution=False, add_images=False):
    """Return image array from `QRect` area (p0 and p1 are respectively the 
    top-left and bottom-right `QPointF` objects)
    
    adjust_range: None (return raw data, dtype=np.float32), 'original' 
    (return data with original data type), 'normalize' (normalize range with
    original data type)"""
    assert adjust_range in (None, 'normalize', 'original')
    items = get_items_in_rectangle(plot, p0, p1, item_type=item_type)
    if not items:
        raise TypeError(_("There is no supported image item in current plot."))
    if src_size is None:
        _src_x, _src_y, src_w, src_h = get_plot_qrect(plot, p0, p1).getRect()
    else:
        # The only benefit to pass the src_size list is to avoid any 
        # rounding error in the transformation computed in `get_plot_qrect`
        src_w, src_h = src_size
    destw, desth = compute_trimageitems_original_size(items, src_w, src_h)
    data = get_image_from_plot(plot, p0, p1, destw=destw, desth=desth,
                               apply_lut=apply_lut, add_images=add_images,
                               apply_interpolation=apply_interpolation,
                               original_resolution=original_resolution)
    if adjust_range is None:
        return data
    dtype = None
    for item in items:
        if dtype is None or item.data.dtype.itemsize > dtype.itemsize:
            dtype = item.data.dtype
    if adjust_range == 'normalize':
        from guiqwt import io
        data = io.scale_data_to_dtype(data, dtype=dtype)
    else:
        data = np.array(data, dtype=dtype)
    return data

def get_image_in_shape(obj, norm_range=False, item_type=None,
                       apply_lut=False, apply_interpolation=False):
    """Return image array from rectangle shape"""
    x0, y0, x1, y1 = obj.get_rect()
    (x0, x1), (y0, y1) = sorted([x0, x1]), sorted([y0, y1])
    xc0, yc0 = axes_to_canvas(obj, x0, y0)
    xc1, yc1 = axes_to_canvas(obj, x1, y1)
    adjust_range = 'normalize' if norm_range else 'original'
    return get_image_from_qrect(obj.plot(), QPointF(xc0, yc0),
                                QPointF(xc1, yc1), src_size=(x1-x0, y1-y0),
                                adjust_range=adjust_range, item_type=item_type,
                                apply_lut=apply_lut,
                                apply_interpolation=apply_interpolation,
                                original_resolution=True)

def get_image_from_plot(plot, p0, p1, destw=None, desth=None, add_images=False,
                        apply_lut=False, apply_interpolation=False,
                        original_resolution=False):
    """
    Return pixel data of a rectangular plot area (image items only)
    p0, p1: resp. top-left and bottom-right points (`QPointF` objects)
    apply_lut: apply contrast settings
    add_images: add superimposed images (instead of replace by the foreground)

    .. warning::

        Support only the image items implementing the `IExportROIImageItemType`
        interface, i.e. this does *not* support `XYImageItem` objects
    """
    if destw is None:
        destw = p1.x()-p0.x()+1
    if desth is None:
        desth = p1.y()-p0.y()+1
    items = plot.get_items(item_type=IExportROIImageItemType)
    qrect = get_plot_qrect(plot, p0, p1)
    return assemble_imageitems(items, qrect, destw, desth,# align=4,
                               add_images=add_images, apply_lut=apply_lut,
                               apply_interpolation=apply_interpolation,
                               original_resolution=original_resolution)


#==============================================================================
# Image with custom X, Y axes
#==============================================================================
def to_bins(x):
    """Convert point center to point bounds"""
    bx = np.zeros((x.shape[0]+1,), float)
    bx[1:-1] = (x[:-1]+x[1:])/2
    bx[0] = x[0]-(x[1]-x[0])/2
    bx[-1] = x[-1]+(x[-1]-x[-2])/2
    return bx

class XYImageItem(RawImageItem):
    """
    Construct an image item with non-linear X/Y axes
    
        * x: 1D NumPy array, must be increasing
        * y: 1D NumPy array, must be increasing
        * data: 2D NumPy array
        * param (optional): image parameters
          (:py:class:`guiqwt.styles.XYImageParam` instance)
    """
    __implements__ = (IBasePlotItem, IBaseImageItem, ISerializableType)
    def __init__(self, x=None, y=None, data=None, param=None):
        # if x and y are not increasing arrays, sort them and data accordingly
        if not np.all(np.diff(x) >= 0):
            x_idx = np.argsort(x)
            x = x[x_idx]
            data = data[:, x_idx]
        if not np.all(np.diff(y) >= 0):
            y_idx = np.argsort(y)
            y = y[y_idx]
            data = data[y_idx, :]
        super(XYImageItem, self).__init__(data, param)
        self.x = None
        self.y = None
        if x is not None and y is not None:
            self.set_xy(x, y)

    #---- BaseImageItem API ---------------------------------------------------
    def get_default_param(self):
        """Return instance of the default imageparam DataSet"""
        return XYImageParam(_("Image"))

    #---- Pickle methods ------------------------------------------------------
    def __reduce__(self):
        fname = self.get_filename()
        if fname is None:
            fn_or_data = self.data
        else:
            fn_or_data = fname
        state = (self.imageparam, self.get_lut_range(),
                 self.x, self.y, fn_or_data, self.z())
        res = ( self.__class__, (), state )
        return res

    def __setstate__(self, state):
        param, lut_range, x, y, fn_or_data, z = state
        self.imageparam = param
        if is_text_string(fn_or_data):
            self.set_filename(fn_or_data)
            self.load_data(lut_range)
        elif fn_or_data is not None: # should happen only with previous API
            self.set_data(fn_or_data, lut_range=lut_range)
        self.set_xy(x, y)
        self.setZ(z)
        self.imageparam.update_image(self)

    def serialize(self, writer):
        """Serialize object to HDF5 writer"""
        super(XYImageItem, self).serialize(writer)
        writer.write(self.x, group_name='Xdata')
        writer.write(self.y, group_name='Ydata')
    
    def deserialize(self, reader):
        """Deserialize object from HDF5 reader"""
        super(XYImageItem, self).deserialize(reader)
        x = reader.read(group_name='Xdata', func=reader.read_array)
        y = reader.read(group_name='Ydata', func=reader.read_array)
        self.set_xy(x, y)

    #---- Public API ----------------------------------------------------------
    def set_xy(self, x, y):
        ni, nj = self.data.shape
        x = np.array(x, float)
        y = np.array(y, float)
        if not np.all(np.diff(x) >= 0):
            raise ValueError("x must be an increasing 1D array")
        if not np.all(np.diff(y) >= 0):
            raise ValueError("y must be an increasing 1D array")
        if x.shape[0] == nj:
            self.x = to_bins(x)
        elif x.shape[0] == nj+1:
            self.x = x
        else:
            raise IndexError("x must be a 1D array of length %d or %d" \
                             % (nj, nj+1))
        if y.shape[0] == ni:
            self.y = to_bins(y)
        elif y.shape[0] == ni+1:
            self.y = y
        else:
            raise IndexError("y must be a 1D array of length %d or %d" \
                             % (ni, ni+1))
        self.bounds = QRectF(QPointF(self.x[0], self.y[0]),
                             QPointF(self.x[-1], self.y[-1]))
        self.update_border()

    #--- BaseImageItem API ----------------------------------------------------
    def get_filter(self, filterobj, filterparam):
        """Provides a filter object over this image's content"""
        return XYImageFilterItem(self, filterobj, filterparam)

    def draw_image(self, painter, canvasRect, src_rect, dst_rect, xMap, yMap):
        xytr = (self.x, self.y, src_rect)
        dst_rect = tuple([int(i) for i in dst_rect])
        dest = _scale_xy(self.data, xytr, self._offscreen, dst_rect,
                         self.lut, self.interpolate)
        qrect = QRectF(QPointF(dest[0], dest[1]), QPointF(dest[2], dest[3]))
        painter.drawImage(qrect, self._image, qrect)

    def get_pixel_coordinates(self, xplot, yplot):
        """Return (image) pixel coordinates (from plot coordinates)"""
        return self.x.searchsorted(xplot), self.y.searchsorted(yplot)

    def get_plot_coordinates(self, xpixel, ypixel):
        """Return plot coordinates (from image pixel coordinates)"""
        return self.x[int(pixelround(xpixel))], self.y[int(pixelround(ypixel))]

    def get_x_values(self, i0, i1):
        return self.x[i0:i1]

    def get_y_values(self, j0, j1):
        return self.y[j0:j1]

    def get_closest_coordinates(self, x, y):
        """Return closest image pixel coordinates"""
        i, j = self.get_closest_indexes(x, y)
        return self.x[i], self.y[j]

    #---- IBasePlotItem API ---------------------------------------------------
    def types(self):
        return (IImageItemType, IVoiImageItemType, IColormapImageItemType,
                ITrackableItemType, ISerializableType, ICSImageItemType)

    #---- IBaseImageItem API --------------------------------------------------
    def can_setfullscale(self):
        return True
    def can_sethistogram(self):
        return True

assert_interfaces_valid(XYImageItem)


#==============================================================================
# RGB Image with alpha channel
#==============================================================================
class RGBImageItem(ImageItem):
    """
    Construct a RGB/RGBA image item
    
        * data: NumPy array of uint8 (shape: NxMx[34] -- 3: RGB, 4: RGBA)
          (last dimension: 0: Red, 1: Green, 2: Blue {, 3:Alpha})
        * param (optional): image parameters
          (:py:class:`guiqwt.styles.RGBImageParam` instance)
    """
    __implements__ = (IBasePlotItem, IBaseImageItem, ISerializableType)
    def __init__(self, data=None, param=None):
        self.orig_data = None
        super(RGBImageItem, self).__init__(data, param)
        self.lut = None

    #---- BaseImageItem API ---------------------------------------------------
    def get_default_param(self):
        """Return instance of the default imageparam DataSet"""
        return RGBImageParam(_("Image"))

    #---- Public API ----------------------------------------------------------
    def recompute_alpha_channel(self):
        data = self.orig_data
        if self.orig_data is None:
            return
        H, W, NC = data.shape
        R = data[..., 0].astype(np.uint32)
        G = data[..., 1].astype(np.uint32)
        B = data[..., 2].astype(np.uint32)
        use_alpha = self.imageparam.alpha_mask
        alpha = self.imageparam.alpha
        if NC > 3 and use_alpha:
            A = data[..., 3].astype(np.uint32)
        else:
            A = np.zeros((H, W), np.uint32)
            A[:,:]=int(255*alpha)
        self.data[:,:] = (A<<24)+(R<<16)+(G<<8)+B

    #--- BaseImageItem API ----------------------------------------------------
    # Override lut/bg handling
    def set_lut_range(self, range):
        pass

    def set_background_color(self, qcolor):
        self.lut = None

    def set_color_map(self, name_or_table):
        self.lut = None

    #---- RawImageItem API ----------------------------------------------------
    def load_data(self):
        """
        Load data from *filename*
        *filename* has been set using method 'set_filename'
        """
        data = io.imread(self.get_filename(), to_grayscale=False)
        self.set_data(data)

    def set_data(self, data):
        H, W, NC = data.shape
        self.orig_data = data
        self.data = np.empty((H, W), np.uint32)
        self.recompute_alpha_channel()
        self.update_bounds()
        self.update_border()
        self.lut = None

    #---- IBasePlotItem API ---------------------------------------------------
    def types(self):
        return (IImageItemType, ITrackableItemType, ISerializableType)

    #---- IBaseImageItem API --------------------------------------------------
    def can_setfullscale(self):
        return True
    def can_sethistogram(self):
        return False

assert_interfaces_valid(RGBImageItem)


#==============================================================================
# Masked Image
#==============================================================================
class MaskedArea(object):
    """Defines masked areas for a masked image item"""
    def __init__(self, geometry=None, x0=None, y0=None, x1=None, y1=None,
                 inside=None):
        self.geometry = geometry
        self.x0 = x0
        self.y0 = y0
        self.x1 = x1
        self.y1 = y1
        self.inside = inside
    
    def __eq__(self, other):
        return self.geometry == other.geometry and self.x0 == other.x0 and \
               self.y0 == other.y0 and self.x1 == other.x1 and \
               self.y1 == other.y1 and self.inside == other.inside

    def serialize(self, writer):
        """Serialize object to HDF5 writer"""
        for name in ('geometry', 'inside', 'x0', 'y0', 'x1', 'y1'):
            writer.write(getattr(self, name), name)
    
    def deserialize(self, reader):
        """Deserialize object from HDF5 reader"""
        self.geometry = reader.read('geometry')
        self.inside = reader.read('inside')
        for name in ('x0', 'y0', 'x1', 'y1'):
            setattr(self, name, reader.read(name, func=reader.read_float))
    
class MaskedImageItem(ImageItem):
    """
    Construct a masked image item
    
        * data: 2D NumPy array
        * mask (optional): 2D NumPy array
        * param (optional): image parameters
          (:py:class:`guiqwt.styles.MaskedImageParam` instance)
    """
    __implements__ = (IBasePlotItem, IBaseImageItem, IHistDataSource,
                      IVoiImageItemType)
    def __init__(self, data=None, mask=None, param=None):
        self.orig_data = None
        self._mask = mask
        self._mask_filename = None
        self._masked_areas = []
        super(MaskedImageItem, self).__init__(data, param)

    #---- BaseImageItem API ---------------------------------------------------
    def get_default_param(self):
        """Return instance of the default imageparam DataSet"""
        return MaskedImageParam(_("Image"))

    #---- Pickle methods -------------------------------------------------------
    def __reduce__(self):
        fname = self.get_filename()
        if fname is None:
            fn_or_data = self.data
        else:
            fn_or_data = fname
        state = (self.imageparam, self.get_lut_range(), fn_or_data, self.z(),
                 self.get_mask_filename(), self.get_masked_areas())
        res = ( self.__class__, (), state )
        return res

    def __setstate__(self, state):
        param, lut_range, fn_or_data, z, mask_fname, old_masked_areas = state
        if old_masked_areas and isinstance(old_masked_areas[0], MaskedArea):
            masked_areas = old_masked_areas
        else:
            # Compatibility with old format
            masked_areas = []
            for geometry, x0, y0, x1, y1, inside in old_masked_areas:
                area = MaskedArea(geometry=geometry, x0=x0, y0=y0, x1=x1, y1=y1,
                                  inside=inside)
                masked_areas.append(area)
        self.imageparam = param
        if is_text_string(fn_or_data):
            self.set_filename(fn_or_data)
            self.load_data(lut_range)
        elif fn_or_data is not None: # should happen only with previous API
            self.set_data(fn_or_data, lut_range=lut_range)
        self.setZ(z)
        self.imageparam.update_image(self)
        if mask_fname is not None:
            self.set_mask_filename(mask_fname)
            self.load_mask_data()
        elif masked_areas and self.data is not None:
            self.set_masked_areas(masked_areas)
            self.apply_masked_areas()

    def serialize(self, writer):
        """Serialize object to HDF5 writer"""
        super(MaskedImageItem, self).serialize(writer)
        writer.write(self.get_mask_filename(), group_name='mask_fname')
        writer.write_object_list(self._masked_areas, 'masked_areas')
    
    def deserialize(self, reader):
        """Deserialize object from HDF5 reader"""
        super(MaskedImageItem, self).deserialize(reader)
        mask_fname = reader.read(group_name='mask_fname',
                                 func=reader.read_unicode)
        masked_areas = reader.read_object_list('masked_areas', MaskedArea)
        if mask_fname:
            self.set_mask_filename(mask_fname)
            self.load_mask_data()
        elif masked_areas and self.data is not None:
            self.set_masked_areas(masked_areas)
            self.apply_masked_areas()

    #---- Public API -----------------------------------------------------------
    def update_mask(self):
        if isinstance(self.data, np.ma.MaskedArray):
            self.data.set_fill_value(self.imageparam.filling_value)

    def set_mask(self, mask):
        """Set image mask"""
        self.data.mask = mask

    def get_mask(self):
        """Return image mask"""
        return self.data.mask

    def set_mask_filename(self, fname):
        """
        Set mask filename
        
        There are two ways for pickling mask data of `MaskedImageItem` objects:

            1. using the mask filename (as for data itself)
            2. using the mask areas (`MaskedAreas` instance, see set_mask_areas)

        When saving objects, the first method is tried and then, if no
        filename has been defined for mask data, the second method is used.
        """
        self._mask_filename = fname

    def get_mask_filename(self):
        return self._mask_filename

    def load_mask_data(self):
        data = io.imread(self.get_mask_filename(), to_grayscale=True)
        self.set_mask(data)
        self._mask_changed()

    def set_masked_areas(self, areas):
        """Set masked areas (see set_mask_filename)"""
        self._masked_areas = areas

    def get_masked_areas(self):
        return self._masked_areas

    def add_masked_area(self, geometry, x0, y0, x1, y1, inside):
        area = MaskedArea(geometry=geometry, x0=x0, y0=y0, x1=x1, y1=y1,
                          inside=inside)
        for _area in self._masked_areas:
            if area == _area:
                return
        self._masked_areas.append(area)

    def _mask_changed(self):
        """Emit the :py:data:`guiqwt.baseplot.BasePlot.SIG_MASK_CHANGED` signal"""
        plot = self.plot()
        if plot is not None:
            plot.SIG_MASK_CHANGED.emit(self)

    def apply_masked_areas(self):
        """Apply masked areas"""
        for area in self._masked_areas:
            if area.geometry == 'rectangular':
                self.mask_rectangular_area(area.x0, area.y0, area.x1, area.y1,
                                   area.inside, trace=False, do_signal=False)
            else:
                self.mask_circular_area(area.x0, area.y0, area.x1, area.y1,
                                    area.inside, trace=False, do_signal=False)
        self._mask_changed()

    def mask_all(self):
        """Mask all pixels"""
        self.data.mask = True
        self._mask_changed()

    def unmask_all(self):
        """Unmask all pixels"""
        self.data.mask = np.ma.nomask
        self.set_masked_areas([])
        self._mask_changed()

    def mask_rectangular_area(self, x0, y0, x1, y1, inside=True,
                              trace=True, do_signal=True):
        """
        Mask rectangular area
        If inside is True (default), mask the inside of the area
        Otherwise, mask the outside
        """
        ix0, iy0, ix1, iy1 = self.get_closest_index_rect(x0, y0, x1, y1)
        if inside:
            self.data[iy0:iy1, ix0:ix1] = np.ma.masked
        else:
            indexes = np.ones(self.data.shape, dtype=np.bool)
            indexes[iy0:iy1, ix0:ix1] = False
            self.data[indexes] = np.ma.masked
        if trace:
            self.add_masked_area('rectangular', x0, y0, x1, y1, inside)
        if do_signal:
            self._mask_changed()

    def mask_circular_area(self, x0, y0, x1, y1, inside=True,
                           trace=True, do_signal=True):
        """
        Mask circular area, inside the rectangle (x0, y0, x1, y1), i.e.
        circle with a radius of ``.5\*(x1-x0)``
        If inside is True (default), mask the inside of the area
        Otherwise, mask the outside
        """
        ix0, iy0, ix1, iy1 = self.get_closest_index_rect(x0, y0, x1, y1)
        xc, yc = .5*(x0+x1), .5*(y0+y1)
        radius = .5*(x1-x0)
        xdata, ydata = self.get_x_values(ix0, ix1), self.get_y_values(iy0, iy1)
        for ix in range(ix0, ix1):
            for iy in range(iy0, iy1):
                distance = np.sqrt((xdata[ix-ix0]-xc)**2+(ydata[iy-iy0]-yc)**2)
                if inside:
                    if distance <= radius:
                        self.data[iy, ix] = np.ma.masked
                elif distance > radius:
                    self.data[iy, ix] = np.ma.masked
        if not inside:
            self.mask_rectangular_area(x0, y0, x1, y1, inside, trace=False)
        if trace:
            self.add_masked_area('circular', x0, y0, x1, y1, inside)
        if do_signal:
            self._mask_changed()

    def is_mask_visible(self):
        """Return mask visibility"""
        return self.imageparam.show_mask

    def set_mask_visible(self, state):
        """Set mask visibility"""
        self.imageparam.show_mask = state
        plot = self.plot()
        if plot is not None:
            plot.replot()

    #---- BaseImageItem API ----------------------------------------------------
    def draw_image(self, painter, canvasRect, src_rect, dst_rect, xMap, yMap):
        ImageItem.draw_image(self, painter, canvasRect,
                             src_rect, dst_rect, xMap, yMap)
        if self.data is None:
            return
        if self.is_mask_visible():
            _a, _b, bg, _cmap = self.lut
            alpha_masked = np.uint32(255*self.imageparam.alpha_masked+0.5
                                     ).clip(0, 255) << 24
            alpha_unmasked = np.uint32(255*self.imageparam.alpha_unmasked+0.5
                                       ).clip(0, 255) << 24
            cmap = np.array([np.uint32(0x000000 & 0xffffff) | alpha_unmasked,
                             np.uint32(0xffffff & 0xffffff) | alpha_masked],
                            dtype=np.uint32)
            lut = (1, 0, bg, cmap)
            shown_data = np.ma.getmaskarray(self.data)
            src2 = self._rescale_src_rect(src_rect)
            dst_rect = tuple([int(i) for i in dst_rect])
            dest = _scale_rect(shown_data, src2, self._offscreen, dst_rect,
                               lut, (INTERP_NEAREST,))
            qrect = QRectF(QPointF(dest[0], dest[1]), QPointF(dest[2], dest[3]))
            painter.drawImage(qrect, self._image, qrect)

    #---- RawImageItem API -----------------------------------------------------
    def set_data(self, data, lut_range=None):
        """
        Set Image item data
        
            * data: 2D NumPy array
            * lut_range: LUT range -- tuple (levelmin, levelmax)
        """
        ImageItem.set_data(self, data, lut_range)
        self.orig_data = data
        self.data = data.view(np.ma.MaskedArray)
        self.set_mask(self._mask)
        self._mask = None # removing reference to this temporary array
        if self.imageparam.filling_value is None:
            self.imageparam.filling_value = self.data.get_fill_value()
#        self.data.harden_mask()
        self.update_mask()


#==============================================================================
# Image filter
#==============================================================================
#TODO: Implement get_filter methods for image items other than XYImageItem!
class ImageFilterItem(BaseImageItem):
    """
    Construct a rectangular area image filter item
    
        * image: :py:class:`guiqwt.image.RawImageItem` instance
        * filter: function (x, y, data) --> data
        * param: image filter parameters
          (:py:class:`guiqwt.styles.ImageFilterParam` instance)
    """
    __implements__ = (IBasePlotItem, IBaseImageItem)
    _can_select = True
    _can_resize = True
    _can_move = True
    def __init__(self, image, filter, param):
        self.use_source_cmap = None
        self.image = None # BaseImageItem constructor will try to set this
                          # item's color map using the method 'set_color_map'
        super(ImageFilterItem, self).__init__(param=param)
        self.border_rect.set_style("plot", "shape/imagefilter")
        self.image = image
        self.filter = filter

        self.imagefilterparam = param
        self.imagefilterparam.update_imagefilter(self)

    #---- Public API -----------------------------------------------------------
    def set_image(self, image):
        """
        Set the image item on which the filter will be applied
        
            * image: :py:class:`guiqwt.image.RawImageItem` instance
        """
        self.image = image

    def set_filter(self, filter):
        """
        Set the filter function
        
            * filter: function (x, y, data) --> data
        """
        self.filter = filter

    #---- QwtPlotItem API ------------------------------------------------------
    def boundingRect(self):
        x0, y0, x1, y1 = self.border_rect.get_rect()
        return QRectF(x0, y0, x1-x0, y1-y0)

    #---- IBasePlotItem API ----------------------------------------------------
    def update_item_parameters(self):
        BaseImageItem.update_item_parameters(self)
        self.imagefilterparam.update_param(self)

    def get_item_parameters(self, itemparams):
        BaseImageItem.get_item_parameters(self, itemparams)
        self.update_item_parameters()
        itemparams.add("ImageFilterParam", self, self.imagefilterparam)

    def set_item_parameters(self, itemparams):
        update_dataset(self.imagefilterparam,
                       itemparams.get("ImageFilterParam"),
                       visible_only=True)
        self.imagefilterparam.update_imagefilter(self)
        BaseImageItem.set_item_parameters(self, itemparams)

    def move_local_point_to(self, handle, pos, ctrl=None):
        """Move a handle as returned by hit_test to the new position pos
        ctrl: True if <Ctrl> button is being pressed, False otherwise"""
        npos = canvas_to_axes(self, pos)
        self.border_rect.move_point_to(handle, npos)

    def move_local_shape(self, old_pos, new_pos):
        """Translate the shape such that old_pos becomes new_pos
        in canvas coordinates"""
        old_pt = canvas_to_axes(self, old_pos)
        new_pt = canvas_to_axes(self, new_pos)
        self.border_rect.move_shape(old_pt, new_pt)
        if self.plot():
            self.plot().SIG_ITEM_MOVED.emit(self, *(old_pt+new_pt))

    def move_with_selection(self, delta_x, delta_y):
        """
        Translate the shape together with other selected items
        delta_x, delta_y: translation in plot coordinates
        """
        self.border_rect.move_with_selection(delta_x, delta_y)

    def set_color_map(self, name_or_table):
        if self.use_source_cmap:
            if self.image is not None:
                self.image.set_color_map(name_or_table)
        else:
            BaseImageItem.set_color_map(self, name_or_table)

    def get_color_map(self):
        if self.use_source_cmap:
            return self.image.get_color_map()
        else:
            return BaseImageItem.get_color_map(self)

    def get_lut_range(self):
        if self.use_source_cmap:
            return self.image.get_lut_range()
        else:
            return BaseImageItem.get_lut_range(self)

    def set_lut_range(self, lut_range):
        if self.use_source_cmap:
            self.image.set_lut_range(lut_range)
        else:
            BaseImageItem.set_lut_range(self, lut_range)

    #---- IBaseImageItem API ---------------------------------------------------
    def types(self):
        return (IImageItemType, IVoiImageItemType, IColormapImageItemType,
                ITrackableItemType)

    def can_setfullscale(self):
        return False
    def can_sethistogram(self):
        return True


class XYImageFilterItem(ImageFilterItem):
    """
    Construct a rectangular area image filter item
    
        * image: :py:class:`guiqwt.image.XYImageItem` instance
        * filter: function (x, y, data) --> data
        * param: image filter parameters
          (:py:class:`guiqwt.styles.ImageFilterParam` instance)
    """
    def __init__(self, image, filter, param):
        ImageFilterItem.__init__(self, image, filter, param)

    def set_image(self, image):
        """
        Set the image item on which the filter will be applied
        
            * image: :py:class:`guiqwt.image.XYImageItem` instance
        """
        ImageFilterItem.set_image(self, image)

    def draw_image(self, painter, canvasRect, src_rect, dst_rect, xMap, yMap):
        bounds = self.boundingRect()

        filt_qrect = bounds & self.image.boundingRect()
        x0, y0, x1, y1 = filt_qrect.getCoords()
        i0, i1 = xMap.transform(x0), xMap.transform(x1)
        j0, j1 = yMap.transform(y0), yMap.transform(y1)

        dstRect = QRect(i0, j0, i1-i0, j1-j0)
        if not dstRect.intersects(canvasRect):
            return

        x, y, data = self.image.get_data(x0, y0, x1, y1)
        new_data = self.filter(x, y, data)
        self.data = new_data
        if self.use_source_cmap:
            lut = self.image.lut
        else:
            lut = self.lut
        dest = _scale_xy(new_data, (x, y, src_rect),
                         self._offscreen, dstRect.getCoords(),
                         lut, self.interpolate)
        qrect = QRectF(QPointF(dest[0], dest[1]), QPointF(dest[2], dest[3]))
        painter.drawImage(qrect, self._image, qrect)

assert_interfaces_valid(ImageFilterItem)


#==============================================================================
# 2-D Histogram
#==============================================================================
class Histogram2DItem(BaseImageItem):
    """
    Construct a 2D histogram item
    
        * X: data (1-D array)
        * Y: data (1-D array)
        * param (optional): style parameters
          (:py:class:`guiqwt.styles.Histogram2DParam` instance)
    """
    __implements__ = (IBasePlotItem, IBaseImageItem, IHistDataSource,
                      IVoiImageItemType,)
    def __init__(self, X, Y, param=None, Z=None):
        if param is None:
            param = ImageParam(_("Image"))
        self._z = Z # allows set_bins to
        super(Histogram2DItem, self).__init__(param=param)

        # Set by parameters
        self.nx_bins = 0
        self.ny_bins = 0
        self.logscale = None

        # internal use
        self._x = None
        self._y = None

        # Histogram parameters
        self.histparam = param
        self.histparam.update_histogram(self)

        self.set_lut_range([0, 10.])
        self.set_data(X, Y, Z)

    #---- Public API -----------------------------------------------------------
    def set_bins(self, NX, NY):
        """Set histogram bins"""
        self.nx_bins = NX
        self.ny_bins = NY
        self.data = np.zeros((self.ny_bins, self.nx_bins), float)
        if self._z is not None:
            self.data_tmp = np.zeros((self.ny_bins, self.nx_bins), float)

    def set_data(self, X, Y, Z=None):
        """Set histogram data"""
        self._x = X
        self._y = Y
        self._z = Z
        self.bounds = QRectF(QPointF(X.min(), Y.min()),
                             QPointF(X.max(), Y.max()))
        self.update_border()

    #---- QwtPlotItem API ------------------------------------------------------
    fill_canvas = True
    def draw_image(self, painter, canvasRect, src_rect, dst_rect, xMap, yMap):
        computation = self.histparam.computation
        i1, j1, i2, j2 = src_rect
        if computation == -1 or self._z is None:
            self.data[:,:] = 0.0
            nmax = histogram2d(self._x, self._y, i1, i2, j1, j2,
                               self.data, self.logscale)
        else:
            self.data_tmp[:,:] = 0.0
            if computation in (2, 4):    # sum, avg
                self.data[:,:] = 0.0
            elif computation in (1, 5):  # min, argmin
                val = np.inf
                self.data[:,:] = val
            elif computation in (0, 6):  # max, argmax
                val = -np.inf
                self.data[:,:] = val
            elif computation==3:
                self.data[:,:] = 1.
            histogram2d_func(self._x, self._y, self._z, i1, i2, j1, j2,
                             self.data_tmp, self.data, computation)
            if computation in (0, 1, 5, 6):
                self.data[self.data==val] = np.nan
            else:
                self.data[self.data_tmp==0.0] = np.nan
        if self.histparam.auto_lut:
            nmin = _nanmin(self.data)
            nmax = _nanmax(self.data)
            self.set_lut_range([nmin, nmax])
            self.plot().update_colormap_axis(self)
        src_rect = (0, 0, self.nx_bins, self.ny_bins)
        drawfunc = lambda *args: BaseImageItem.draw_image(self, *args)
        if self.fill_canvas:
            x1, y1, x2, y2 = canvasRect.getCoords()
            drawfunc(painter, canvasRect, src_rect, (x1, y1, x2, y2), xMap, yMap)
        else:
            drawfunc(painter, canvasRect, src_rect, dst_rect, xMap, yMap)

    #---- IBasePlotItem API ---------------------------------------------------
    def types(self):
        return (IColormapImageItemType, IImageItemType, ITrackableItemType,
                IVoiImageItemType, IColormapImageItemType, ICSImageItemType)

    def update_item_parameters(self):
        BaseImageItem.update_item_parameters(self)
        self.histparam.update_param(self)

    def get_item_parameters(self, itemparams):
        BaseImageItem.get_item_parameters(self, itemparams)
        itemparams.add("Histogram2DParam", self, self.histparam)

    def set_item_parameters(self, itemparams):
        update_dataset(self.histparam, itemparams.get("Histogram2DParam"),
                       visible_only=True)
        self.histparam = itemparams.get("Histogram2DParam")
        self.histparam.update_histogram(self)
        BaseImageItem.set_item_parameters(self, itemparams)

    #---- IBaseImageItem API --------------------------------------------------
    def can_setfullscale(self):
        return True
    def can_sethistogram(self):
        return True

    def get_histogram(self, nbins):
        """interface de IHistDataSource"""
        if self.data is None:
            return [0,], [0, 1]
        _min = _nanmin(self.data)
        _max = _nanmax(self.data)
        if self.data.dtype in (np.float64, np.float32):
            bins = np.unique(np.array(np.linspace(_min, _max, nbins+1),
                                      dtype=self.data.dtype))
        else:
            bins = np.arange(_min, _max+2,
                             dtype=self.data.dtype)
        res2 = np.zeros((bins.size+1,), np.uint32)
        _histogram(self.data.flatten(), bins, res2)
                #toc("histo2")
        res = res2[1:-1], bins
        return res


assert_interfaces_valid(Histogram2DItem)


#==============================================================================
# Image Plot Widget
#==============================================================================
class ImagePlot(CurvePlot):
    """
    Construct a 2D curve and image plotting widget
    (this class inherits :py:class:`guiqwt.curve.CurvePlot`)
    
        * parent: parent widget
        * title: plot title (string)
        * xlabel, ylabel, zlabel: resp. bottom, left and right axis titles
          (strings)
        * xunit, yunit, zunit: resp. bottom, left and right axis units
          (strings)
        * yreverse: reversing y-axis direction of increasing values (bool)
        * aspect_ratio: height to width ratio (float)
        * lock_aspect_ratio: locking aspect ratio (bool)
    """
    DEFAULT_ITEM_TYPE = IImageItemType
    AUTOSCALE_TYPES = (CurveItem, BaseImageItem, PolygonMapItem)
    AXIS_CONF_OPTIONS = ("image_axis", "color_axis", "image_axis", None)
    def __init__(self, parent=None,
                 title=None, xlabel=None, ylabel=None, zlabel=None,
                 xunit=None, yunit=None, zunit=None, yreverse=True,
                 aspect_ratio=1.0, lock_aspect_ratio=True,
                 gridparam=None, section="plot"):

        self.lock_aspect_ratio = lock_aspect_ratio

        if zlabel is not None:
            if ylabel is not None and not is_text_string(ylabel):
                ylabel = ylabel[0]
            ylabel = (ylabel, zlabel)
        if zunit is not None:
            if yunit is not None and not is_text_string(yunit):
                yunit = yunit[0]
            yunit = (yunit, zunit)
        super(ImagePlot, self).__init__(parent=parent, title=title,
                                        xlabel=xlabel, ylabel=ylabel,
                                        xunit=xunit, yunit=yunit,
                                        gridparam=gridparam, section=section)

        self.colormap_axis = self.Y_RIGHT
        axiswidget = self.axisWidget(self.colormap_axis)
        axiswidget.setColorBarEnabled(True)
        self.enableAxis(self.colormap_axis)
        self.__aspect_ratio = None
        self.set_axis_direction('left', yreverse)
        self.set_aspect_ratio(aspect_ratio, lock_aspect_ratio)
        self.replot() # Workaround for the empty image widget bug

    #---- QwtPlot API ---------------------------------------------------------
    def showEvent(self, event):
        """Override BasePlot method"""
        if self.lock_aspect_ratio:
            self._start_autoscaled = True
        CurvePlot.showEvent(self, event)

    #---- CurvePlot API -------------------------------------------------------
    def do_zoom_view(self, dx, dy):
        """Reimplement CurvePlot method"""
        CurvePlot.do_zoom_view(self, dx, dy,
                               lock_aspect_ratio=self.lock_aspect_ratio)

    def do_zoom_rect_view(self, start, end):
        """Reimplement CurvePlot method"""
        CurvePlot.do_zoom_rect_view(self, start, end)
        if self.lock_aspect_ratio:
            self.apply_aspect_ratio()

    #---- Levels histogram-related API ----------------------------------------
    def update_lut_range(self, _min, _max):
        """update the LUT scale"""
        #self.set_items_lut_range(_min, _max, replot=False)
        self.updateAxes()

    #---- Image scale/aspect ratio -related API -------------------------------
    def set_full_scale(self, item):
        if item.can_setfullscale():
            bounds = item.boundingRect()
            self.set_plot_limits(bounds.left(), bounds.right(),
                                 bounds.top(), bounds.bottom())

    def get_current_aspect_ratio(self):
        """Return current aspect ratio"""
        dx = self.axisScaleDiv(self.X_BOTTOM).range()
        dy = self.axisScaleDiv(self.Y_LEFT).range()
        h = self.canvasMap(self.Y_LEFT).pDist()
        w = self.canvasMap(self.X_BOTTOM).pDist()
        return fabs((h*dx)/(w*dy))

    def get_aspect_ratio(self):
        """Return aspect ratio"""
        return self.__aspect_ratio

    def set_aspect_ratio(self, ratio=None, lock=None):
        """Set aspect ratio"""
        if ratio is not None:
            self.__aspect_ratio = ratio
        if lock is not None:
            self.lock_aspect_ratio = lock
        self.apply_aspect_ratio()

    def apply_aspect_ratio(self, full_scale=False):
        if not self.isVisible():
            return
        ymap = self.canvasMap(self.Y_LEFT)
        xmap = self.canvasMap(self.X_BOTTOM)
        h = ymap.pDist()
        w = xmap.pDist()
        dx1, dy1 = xmap.sDist(), fabs(ymap.sDist())
        x0, y0 = xmap.s1(), ymap.s1()
        x1, y1 = xmap.s2(), ymap.s2()
        if y0 > y1:
            y0, y1 = y1, y0
        if full_scale:
            if w == 0:
                return  # avoid division by zero
            dy2 = (h*dx1)/(w*self.__aspect_ratio)
            fix_yaxis = dy2 > dy1
        else:
            fix_yaxis = True
        if fix_yaxis:
            if w == 0:
                return  # avoid division by zero
            dy2 = (h*dx1)/(w*self.__aspect_ratio)
            delta_y = .5*(dy2-dy1)
            y0 -= delta_y
            y1 += delta_y
        else:
            if h == 0:
                return  # avoid division by zero
            dx2 = (w*dy1*self.__aspect_ratio)/h
            delta_x = .5*(dx2-dx1)
            x0 -= delta_x
            x1 += delta_x
        self.set_plot_limits(x0, x1, y0, y1)

    #---- LUT/colormap-related API --------------------------------------------
    def notify_colormap_changed(self):
        """Levels histogram range has changed"""
        item = self.get_last_active_item(IColormapImageItemType)
        if item is not None:
            self.update_colormap_axis(item)
        self.replot()
        self.SIG_LUT_CHANGED.emit(self)

    def update_colormap_axis(self, item):
        if IColormapImageItemType not in item.types():
            return
        zaxis = self.colormap_axis
        axiswidget = self.axisWidget(zaxis)
        self.setAxisScale(zaxis, item.min, item.max)
        # XXX: the colormap can't be displayed if min>max, to fix this
        # we should pass an inverted colormap along with _max, _min values
        axiswidget.setColorMap(QwtInterval(item.min, item.max),
                               item.get_color_map())
        self.updateAxes()

    #---- QwtPlot API ---------------------------------------------------------
    def resizeEvent(self, event):
        """Reimplement Qt method to resize widget"""
        CurvePlot.resizeEvent(self, event)
        if self.lock_aspect_ratio:
            self.apply_aspect_ratio()
        self.replot()

    #---- BasePlot API --------------------------------------------------------
    def add_item(self, item, z=None, autoscale=True):
        """
        Add a *plot item* instance to this *plot widget*

            * item: :py:data:`qwt.QwtPlotItem` object implementing the 
              :py:data:`guiqwt.interfaces.IBasePlotItem` interface
            * z: item's z order (None -> z = max(self.get_items())+1)
              autoscale: True -> rescale plot to fit image bounds
        """
        CurvePlot.add_item(self, item, z)
        if isinstance(item, BaseImageItem):
            parent = self.parent()
            if parent is not None:
                parent.setUpdatesEnabled(False)
            self.update_colormap_axis(item)
            if autoscale:
                self.do_autoscale()
            if parent is not None:
                parent.setUpdatesEnabled(True)
    
    def set_active_item(self, item):
        """Override base set_active_item to change the grid's
        axes according to the selected item"""
        old_active = self.active_item
        CurvePlot.set_active_item(self, item)
        if item is not None and old_active is not item:
            self.update_colormap_axis(item)

    def disable_unused_axes(self):
        """Disable unused axes"""
        CurvePlot.disable_unused_axes(self)
        self.enableAxis(self.colormap_axis)

    def do_autoscale(self, replot=True, axis_id=None):
        """Do autoscale on all axes"""
        CurvePlot.do_autoscale(self, replot=False, axis_id=axis_id)
        self.updateAxes()
        if self.lock_aspect_ratio:
            self.replot()
            self.apply_aspect_ratio(full_scale=True)
        if replot:
            self.replot()
        self.SIG_PLOT_AXIS_CHANGED.emit(self)

    def get_axesparam_class(self, item):
        """Return AxesParam dataset class associated to item's type"""
        if isinstance(item, BaseImageItem):
            return ImageAxesParam
        else:
            return CurvePlot.get_axesparam_class(self, item)

    def edit_axis_parameters(self, axis_id):
        """Edit axis parameters"""
        #XXX: removed the following workaround as the associated bug can't be 
        # reproduced anymore with guiqwt 3. However, keeping the workaround 
        # here (commented) as it could become useful eventually.
        #-----
#        #FIXME: without the following workaround, aspect ratio is changed 
#        # when applying axis parameters
#        # (see also guiqwt.styles.ItemParameters.update)
#        ratio = self.get_current_aspect_ratio()
        #-----
        if axis_id != self.colormap_axis:
            CurvePlot.edit_axis_parameters(self, axis_id)
        #-----
#        self.set_aspect_ratio(ratio=ratio)
#        self.replot()
        #-----