This package is 1.6 MB.
It is available at http://ftp.debian.org/debian/pool/main/r/r-bioc-deseq2/r-bioc-deseq2_1.14.1-1_amd64.deb
.
View its full control file here:
debian/control
.
R package for RNA-Seq Differential Expression Analysis
This package depends on:
r-base-core (>= 3.3.2-1), r-api-3, r-bioc-s4vectors (>= 0.9.25), r-bioc-iranges, r-bioc-genomicranges, r-bioc-summarizedexperiment (>= 1.1.6), r-bioc-biocgenerics (>= 0.7.5), r-bioc-biobase, r-bioc-biocparallel, r-bioc-genefilter, r-bioc-geneplotter, r-cran-ggplot2, r-cran-hmisc, r-cran-rcpp (>= 0.11.0), libblas3 | libblas.so.3, libc6 (>= 2.14), libgcc1 (>= 1:3.0), libgfortran3 (>= 4.3), liblapack3 | liblapack.so.3, libquadmath0 (>= 4.6), libstdc++6 (>= 5.2)
.
This package does not recommend any other package.
This package suggests:
r-cran-testthat, r-cran-knitr, r-cran-pheatmap, r-cran-rcolorbrewer
.
This package does not conflict with any other package.
r-bioc-deseq2 1.14.1-1 is in debian - stretch / main. This package's architecture is: amd64.
File | Mime Type | Owner | Mode | Size |
---|---|---|---|---|
/usr/
|
root:root | 0o755 | ||
/usr/lib/
|
root:root | 0o755 | ||
/usr/lib/R/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/DESeq2/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/DESeq2/CITATION
|
text/plain | root:root | 0o644 | 705 bytes |
/usr/lib/R/site-library/DESeq2/DESCRIPTION
|
text/plain | root:root | 0o644 | 1.1 KB |
/usr/lib/R/site-library/DESeq2/doc/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/DESeq2/doc/DESeq2.pdf
|
application/pdf | root:root | 0o644 | 656.5 KB |
/usr/lib/R/site-library/DESeq2/doc/DESeq2.R
|
text/plain | root:root | 0o644 | 22.4 KB |
/usr/lib/R/site-library/DESeq2/doc/DESeq2.Rnw
|
text/x-tex | root:root | 0o644 | 110.9 KB |
/usr/lib/R/site-library/DESeq2/doc/index.html
|
text/html | root:root | 0o644 | 1.3 KB |
/usr/lib/R/site-library/DESeq2/help/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/DESeq2/help/aliases.rds
|
application/gzip | root:root | 0o644 | 776 bytes |
/usr/lib/R/site-library/DESeq2/help/AnIndex
|
text/plain | root:root | 0o644 | 2.6 KB |
/usr/lib/R/site-library/DESeq2/help/DESeq2.rdb
|
application/octet-stream | root:root | 0o644 | 116.3 KB |
/usr/lib/R/site-library/DESeq2/help/DESeq2.rdx
|
application/gzip | root:root | 0o644 | 1.0 KB |
/usr/lib/R/site-library/DESeq2/help/paths.rds
|
application/gzip | root:root | 0o644 | 480 bytes |
/usr/lib/R/site-library/DESeq2/html/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/DESeq2/html/00Index.html
|
text/html | root:root | 0o644 | 12.1 KB |
/usr/lib/R/site-library/DESeq2/html/R.css
|
text/plain | root:root | 0o644 | 1.3 KB |
/usr/lib/R/site-library/DESeq2/INDEX
|
text/plain | root:root | 0o644 | 3.2 KB |
/usr/lib/R/site-library/DESeq2/libs/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/DESeq2/libs/DESeq2.so
|
application/x-sharedlib | root:root | 0o644 | 175.8 KB |
/usr/lib/R/site-library/DESeq2/Meta/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/DESeq2/Meta/hsearch.rds
|
application/gzip | root:root | 0o644 | 1.8 KB |
/usr/lib/R/site-library/DESeq2/Meta/links.rds
|
application/gzip | root:root | 0o644 | 964 bytes |
/usr/lib/R/site-library/DESeq2/Meta/nsInfo.rds
|
application/gzip | root:root | 0o644 | 1.1 KB |
/usr/lib/R/site-library/DESeq2/Meta/package.rds
|
application/gzip | root:root | 0o644 | 1.3 KB |
/usr/lib/R/site-library/DESeq2/Meta/Rd.rds
|
application/gzip | root:root | 0o644 | 1.9 KB |
/usr/lib/R/site-library/DESeq2/Meta/vignette.rds
|
application/gzip | root:root | 0o644 | 231 bytes |
/usr/lib/R/site-library/DESeq2/NAMESPACE
|
text/plain | root:root | 0o644 | 3.1 KB |
/usr/lib/R/site-library/DESeq2/NEWS
|
text/plain | root:root | 0o644 | 18.4 KB |
/usr/lib/R/site-library/DESeq2/R/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/DESeq2/R/DESeq2
|
text/plain | root:root | 0o644 | 1.0 KB |
/usr/lib/R/site-library/DESeq2/R/DESeq2.rdb
|
application/octet-stream | root:root | 0o644 | 206.5 KB |
/usr/lib/R/site-library/DESeq2/R/DESeq2.rdx
|
application/gzip | root:root | 0o644 | 3.0 KB |
/usr/lib/R/site-library/DESeq2/script/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/DESeq2/script/makeSim.R
|
text/plain | root:root | 0o644 | 415 bytes |
/usr/lib/R/site-library/DESeq2/script/runScripts.R
|
text/plain | root:root | 0o644 | 6.9 KB |
/usr/lib/R/site-library/DESeq2/script/simulateCluster.R
|
text/plain | root:root | 0o644 | 2.6 KB |
/usr/lib/R/site-library/DESeq2/script/simulateDE.R
|
text/plain | root:root | 0o644 | 2.4 KB |
/usr/lib/R/site-library/DESeq2/script/simulateLFCAccuracy.R
|
text/plain | root:root | 0o644 | 2.2 KB |
/usr/lib/R/site-library/DESeq2/script/simulateOutliers.R
|
text/plain | root:root | 0o644 | 3.5 KB |
/usr/lib/R/site-library/DESeq2/script/simulation.pdf
|
application/pdf | root:root | 0o644 | 384.8 KB |
/usr/lib/R/site-library/DESeq2/script/simulation.Rmd
|
text/plain | root:root | 0o644 | 18.2 KB |
/usr/lib/R/site-library/DESeq2/script/testsuite.Rmd
|
text/plain | root:root | 0o644 | 4.9 KB |
/usr/lib/R/site-library/DESeq2/script/vst.nb
|
text/plain | root:root | 0o644 | 34.5 KB |
/usr/lib/R/site-library/DESeq2/script/vst.pdf
|
application/pdf | root:root | 0o644 | 182.0 KB |
/usr/share/
|
root:root | 0o755 | ||
/usr/share/doc/
|
root:root | 0o755 | ||
/usr/share/doc/r-bioc-deseq2/
|
root:root | 0o755 | ||
/usr/share/doc/r-bioc-deseq2/changelog.Debian.gz
|
application/gzip | root:root | 0o644 | 421 bytes |
/usr/share/doc/r-bioc-deseq2/copyright
|
text/plain | root:root | 0o644 | 1.2 KB |
/usr/share/doc/r-bioc-deseq2/examples/
|
root:root | 0o755 | ||
/usr/share/doc/r-bioc-deseq2/examples/vignettes/
|
root:root | 0o755 | ||
/usr/share/doc/r-bioc-deseq2/examples/vignettes/DESeq2.Rnw.gz
|
application/gzip | root:root | 0o644 | 35.4 KB |
/usr/share/doc/r-bioc-deseq2/examples/vignettes/library.bib.gz
|
application/gzip | root:root | 0o644 | 3.9 KB |
/usr/share/doc/r-bioc-deseq2/README.test
|
text/plain | root:root | 0o644 | 262 bytes |
/usr/share/doc/r-bioc-deseq2/run-unit-test
|
text/x-shellscript | root:root | 0o644 | 314 bytes |
/usr/share/doc/r-bioc-deseq2/tests/
|
root:root | 0o755 | ||
/usr/share/doc/r-bioc-deseq2/tests/testthat/
|
root:root | 0o755 | ||
/usr/share/doc/r-bioc-deseq2/tests/testthat.R
|
text/plain | root:root | 0o644 | 59 bytes |
/usr/share/doc/r-bioc-deseq2/tests/testthat/test_1vs1.R
|
text/plain | root:root | 0o644 | 100 bytes |
/usr/share/doc/r-bioc-deseq2/tests/testthat/test_addMLE.R
|
text/plain | root:root | 0o644 | 692 bytes |
/usr/share/doc/r-bioc-deseq2/tests/testthat/test_betaFitting.R
|
text/plain | root:root | 0o644 | 1.5 KB |
/usr/share/doc/r-bioc-deseq2/tests/testthat/test_collapse.R
|
text/plain | root:root | 0o644 | 262 bytes |
/usr/share/doc/r-bioc-deseq2/tests/testthat/test_construction_errors.R
|
text/plain | root:root | 0o644 | 1.9 KB |
/usr/share/doc/r-bioc-deseq2/tests/testthat/test_counts_input.R
|
text/plain | root:root | 0o644 | 520 bytes |
/usr/share/doc/r-bioc-deseq2/tests/testthat/test_custom_filt.R
|
text/plain | root:root | 0o644 | 761 bytes |
/usr/share/doc/r-bioc-deseq2/tests/testthat/test_DESeq.R
|
text/plain | root:root | 0o644 | 595 bytes |
/usr/share/doc/r-bioc-deseq2/tests/testthat/test_dispersions.R
|
text/plain | root:root | 0o644 | 975 bytes |
/usr/share/doc/r-bioc-deseq2/tests/testthat/test_disp_fit.R.gz
|
application/gzip | root:root | 0o644 | 1.6 KB |
/usr/share/doc/r-bioc-deseq2/tests/testthat/test_edge_case.R
|
text/plain | root:root | 0o644 | 1.1 KB |
/usr/share/doc/r-bioc-deseq2/tests/testthat/test_factors.R
|
text/plain | root:root | 0o644 | 342 bytes |
/usr/share/doc/r-bioc-deseq2/tests/testthat/test_fpkm.R
|
text/plain | root:root | 0o644 | 304 bytes |
/usr/share/doc/r-bioc-deseq2/tests/testthat/test_frozen_transform.R
|
text/plain | root:root | 0o644 | 923 bytes |
/usr/share/doc/r-bioc-deseq2/tests/testthat/test_htseq.R
|
text/plain | root:root | 0o644 | 354 bytes |
/usr/share/doc/r-bioc-deseq2/tests/testthat/test_interactions.R
|
text/plain | root:root | 0o644 | 296 bytes |
/usr/share/doc/r-bioc-deseq2/tests/testthat/test_linear_mu.R
|
text/plain | root:root | 0o644 | 711 bytes |
/usr/share/doc/r-bioc-deseq2/tests/testthat/test_LRT_prior.R
|
text/plain | root:root | 0o644 | 479 bytes |
/usr/share/doc/r-bioc-deseq2/tests/testthat/test_LRT.R
|
text/plain | root:root | 0o644 | 325 bytes |
/usr/share/doc/r-bioc-deseq2/tests/testthat/test_methods.R
|
text/plain | root:root | 0o644 | 380 bytes |
/usr/share/doc/r-bioc-deseq2/tests/testthat/test_model_matrix.R
|
text/plain | root:root | 0o644 | 1.1 KB |
/usr/share/doc/r-bioc-deseq2/tests/testthat/test_nbinomWald.R
|
text/plain | root:root | 0o644 | 942 bytes |
/usr/share/doc/r-bioc-deseq2/tests/testthat/test_optim.R
|
text/plain | root:root | 0o644 | 1.8 KB |
/usr/share/doc/r-bioc-deseq2/tests/testthat/test_outlier.R
|
text/plain | root:root | 0o644 | 2.5 KB |
/usr/share/doc/r-bioc-deseq2/tests/testthat/test_parallel.R
|
text/plain | root:root | 0o644 | 2.3 KB |
/usr/share/doc/r-bioc-deseq2/tests/testthat/test_plots.R
|
text/plain | root:root | 0o644 | 699 bytes |
/usr/share/doc/r-bioc-deseq2/tests/testthat/test_QR.R
|
text/plain | root:root | 0o644 | 242 bytes |
/usr/share/doc/r-bioc-deseq2/tests/testthat/test_results.R.gz
|
application/gzip | root:root | 0o644 | 1.3 KB |
/usr/share/doc/r-bioc-deseq2/tests/testthat/test_rlog.R
|
text/plain | root:root | 0o644 | 713 bytes |
/usr/share/doc/r-bioc-deseq2/tests/testthat/test_size_factor.R
|
text/plain | root:root | 0o644 | 802 bytes |
/usr/share/doc/r-bioc-deseq2/tests/testthat/test_tximport.R
|
text/plain | root:root | 0o644 | 632 bytes |
/usr/share/doc/r-bioc-deseq2/tests/testthat/test_vst.R
|
text/plain | root:root | 0o644 | 1.1 KB |
/usr/share/doc/r-bioc-deseq2/tests/testthat/test_zero_zero.R
|
text/plain | root:root | 0o644 | 755 bytes |