This file is indexed.

/usr/lib/R/site-library/snpStats/doc/index.html is in r-bioc-snpstats 1.24.0+dfsg-1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

 1
 2
 3
 4
 5
 6
 7
 8
 9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<html xmlns="http://www.w3.org/1999/xhtml">
<head><title>R: Vignettes and other documentation</title>
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
<link rel="stylesheet" type="text/css" href="/doc/html/R.css" />
</head><body>
<h1> Vignettes and other documentation
<img class="toplogo" src="/doc/html/Rlogo.svg" alt="[R logo]" />
</h1>
<hr/>
<div style="text-align: center;">
<a href="/doc/html/index.html"><img class="arrow" src="/doc/html/up.jpg" alt="[Top]" /></a>
</div>
<h2>Vignettes from package 'snpStats'</h2>
<table width="100%">
<col style="width: 22%;" />
<col style="width:  2%;" />
<col style="width: 50%;" />
<col style="width:  8%;" />
<col style="width:  8%;" />
<col style="width:  8%;" />
<tr><td style="text-align: right; vertical-align: top;"><a href="../../../library/snpStats/doc/Fst-vignette.pdf">snpStats::Fst-vignette</a></td>
<td></td><td valign="top">Fst</td>
<td valign="top"><a href="../../../library/snpStats/doc/Fst-vignette.pdf">PDF</a></td>
<td valign="top"><a href="../../../library/snpStats/doc/Fst-vignette.Rnw">source</a></td>
<td valign="top" style="white-space: nowrap"><a href="../../../library/snpStats/doc/Fst-vignette.R">R code</a></td></tr>
<tr><td style="text-align: right; vertical-align: top;"><a href="../../../library/snpStats/doc/data-input-vignette.pdf">snpStats::data-input-vignette</a></td>
<td></td><td valign="top">Data input</td>
<td valign="top"><a href="../../../library/snpStats/doc/data-input-vignette.pdf">PDF</a></td>
<td valign="top"><a href="../../../library/snpStats/doc/data-input-vignette.Rnw">source</a></td>
<td valign="top" style="white-space: nowrap"><a href="../../../library/snpStats/doc/data-input-vignette.R">R code</a></td></tr>
<tr><td style="text-align: right; vertical-align: top;"><a href="../../../library/snpStats/doc/differences.pdf">snpStats::differences</a></td>
<td></td><td valign="top">snpMatrix-differences</td>
<td valign="top"><a href="../../../library/snpStats/doc/differences.pdf">PDF</a></td>
<td valign="top"><a href="../../../library/snpStats/doc/differences.Rnw">source</a></td>
<td valign="top" style="white-space: nowrap"></td></tr>
<tr><td style="text-align: right; vertical-align: top;"><a href="../../../library/snpStats/doc/imputation-vignette.pdf">snpStats::imputation-vignette</a></td>
<td></td><td valign="top">Imputation and meta-analysis</td>
<td valign="top"><a href="../../../library/snpStats/doc/imputation-vignette.pdf">PDF</a></td>
<td valign="top"><a href="../../../library/snpStats/doc/imputation-vignette.Rnw">source</a></td>
<td valign="top" style="white-space: nowrap"><a href="../../../library/snpStats/doc/imputation-vignette.R">R code</a></td></tr>
<tr><td style="text-align: right; vertical-align: top;"><a href="../../../library/snpStats/doc/ld-vignette.pdf">snpStats::ld-vignette</a></td>
<td></td><td valign="top">LD statistics</td>
<td valign="top"><a href="../../../library/snpStats/doc/ld-vignette.pdf">PDF</a></td>
<td valign="top"><a href="../../../library/snpStats/doc/ld-vignette.Rnw">source</a></td>
<td valign="top" style="white-space: nowrap"><a href="../../../library/snpStats/doc/ld-vignette.R">R code</a></td></tr>
<tr><td style="text-align: right; vertical-align: top;"><a href="../../../library/snpStats/doc/pca-vignette.pdf">snpStats::pca-vignette</a></td>
<td></td><td valign="top">Principal components analysis</td>
<td valign="top"><a href="../../../library/snpStats/doc/pca-vignette.pdf">PDF</a></td>
<td valign="top"><a href="../../../library/snpStats/doc/pca-vignette.Rnw">source</a></td>
<td valign="top" style="white-space: nowrap"><a href="../../../library/snpStats/doc/pca-vignette.R">R code</a></td></tr>
<tr><td style="text-align: right; vertical-align: top;"><a href="../../../library/snpStats/doc/snpStats-vignette.pdf">snpStats::snpStats-vignette</a></td>
<td></td><td valign="top">snpStats introduction</td>
<td valign="top"><a href="../../../library/snpStats/doc/snpStats-vignette.pdf">PDF</a></td>
<td valign="top"><a href="../../../library/snpStats/doc/snpStats-vignette.Rnw">source</a></td>
<td valign="top" style="white-space: nowrap"><a href="../../../library/snpStats/doc/snpStats-vignette.R">R code</a></td></tr>
<tr><td style="text-align: right; vertical-align: top;"><a href="../../../library/snpStats/doc/tdt-vignette.pdf">snpStats::tdt-vignette</a></td>
<td></td><td valign="top">TDT tests</td>
<td valign="top"><a href="../../../library/snpStats/doc/tdt-vignette.pdf">PDF</a></td>
<td valign="top"><a href="../../../library/snpStats/doc/tdt-vignette.Rnw">source</a></td>
<td valign="top" style="white-space: nowrap"><a href="../../../library/snpStats/doc/tdt-vignette.R">R code</a></td></tr>
</table>
</body></html>