/usr/lib/R/site-library/VariantAnnotation/DESCRIPTION is in r-bioc-variantannotation 1.20.2-1+b1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 | Package: VariantAnnotation
Type: Package
Title: Annotation of Genetic Variants
Description: Annotate variants, compute amino acid coding changes,
predict coding outcomes.
Version: 1.20.2
Authors@R: c(person("Valerie", "Obenchain", role=c("aut", "cre"),
email="maintainer@bioconductor.org"),
person("Martin", "Morgan", role="aut"),
person("Michael", "Lawrence", role="aut"),
person("Stephanie", "Gogarten", role="ctb"))
License: Artistic-2.0
Depends: R (>= 2.8.0), methods, BiocGenerics (>= 0.15.3), GenomeInfoDb
(>= 1.7.1), GenomicRanges (>= 1.19.47), SummarizedExperiment
(>= 0.3.1), Rsamtools (>= 1.23.10)
Imports: utils, DBI, Biobase, S4Vectors (>= 0.9.47), IRanges (>=
2.3.25), XVector (>= 0.5.6), Biostrings (>= 2.33.5),
AnnotationDbi (>= 1.27.9), BSgenome (>= 1.37.6), rtracklayer
(>= 1.25.16), GenomicFeatures (>= 1.19.17)
Suggests: RUnit, AnnotationHub, BSgenome.Hsapiens.UCSC.hg19,
TxDb.Hsapiens.UCSC.hg19.knownGene,
SNPlocs.Hsapiens.dbSNP.20110815,
SNPlocs.Hsapiens.dbSNP.20101109, SIFT.Hsapiens.dbSNP132,
SIFT.Hsapiens.dbSNP137, PolyPhen.Hsapiens.dbSNP131, snpStats,
ggplot2, BiocStyle
LinkingTo: S4Vectors, IRanges, XVector, Biostrings, Rsamtools
LazyLoad: yes
biocViews: DataImport, Sequencing, SNP, Annotation, Genetics,
VariantAnnotation
Video:
https://www.youtube.com/watch?v=Ro0lHQ_J--I&list=UUqaMSQd_h-2EDGsU6WDiX0Q
NeedsCompilation: yes
Packaged: 2016-11-30 23:53:39 UTC; biocbuild
Author: Valerie Obenchain [aut, cre],
Martin Morgan [aut],
Michael Lawrence [aut],
Stephanie Gogarten [ctb]
Maintainer: Valerie Obenchain <maintainer@bioconductor.org>
Built: R 3.3.3; x86_64-pc-linux-gnu; 'Wed, 12 Apr 2017 15:47:35 +0000'; unix
|