This file is indexed.

/usr/lib/R/site-library/VariantAnnotation/unitTests/cases/multiple_INFO_fields.vcf is in r-bioc-variantannotation 1.20.2-1+b1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

1
2
3
4
5
6
7
8
##fileformat=VCFv4.1
##fileDate=20141205
##INFO=<ID=AF,Number=A,Type=Float,Description="Estimated allele frequency in the range (0,1)">
##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of samples with data">
##contig=<ID=17,length=81195210,assembly="GRCh37">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO
17	10001541	rs12451372	C	G,T	100	PASS	AF=0.139776,0.0595048;NS=2504	
17	10001547	17:10001547_G/A	G	A	100	PASS	AF=0.000199681;NS=2504