/usr/lib/R/site-library/BatchJobs/INDEX is in r-cran-batchjobs 1.6-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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addRegistryPackages Add packages to registry.
addRegistrySourceDirs Add source dirs to registry.
addRegistrySourceFiles
Add source files to registry.
batchExpandGrid Map function over all combinations.
batchExport Export R object to be available on the slaves.
batchMap Maps a function over lists or vectors, adding
jobs to a registry.
batchMapQuick Combination of makeRegistry, batchMap and
submitJobs.
batchMapResults Maps a function over the results of a registry
by using batchMap.
batchReduce Reduces via a binary function over a list
adding jobs to a registry.
batchReduceResults Reduces results via a binary function and adds
jobs for this to a registry.
batchUnexport Unload exported R objects.
callFunctionOnSSHWorkers
Call an arbitrary function on specified SSH
workers.
cfBrewTemplate Cluster functions helper: Brew your template
into a job description file.
cfHandleUnknownSubmitError
Cluster functions helper: Handle an unknown
error during job submission.
cfKillBatchJob Cluster functions helper: Kill a batch job via
OS command
cfReadBrewTemplate Cluster functions helper: Read in your brew
template file.
configuration BatchJobs configuration.
debugMulticore Helper function to debug multicore mode.
debugSSH Helper function to debug SSH mode.
filterResults Find all results where a specific condition is
true.
findDone Find jobs depending on computional state.
findJobs Finds ids of jobs that match a query.
getConfig Returns a list of BatchJobs configuration
settings
getErrorMessages Get error messages of jobs.
getJob Get job from registry by id.
getJobIds Get ids of jobs in registry.
getJobInfo Get computational information of jobs.
getJobNr Get number of jobs in registry.
getJobParamDf Returns parameters for all jobs as the rows of
a data.frame.
getJobResources Function to get the resources that were
submitted for some jobs.
getJobs Get jobs from registry by id.
getLogFiles Get log file paths for jobs.
getResources Function to get job resources in job function.
getSSHWorkersInfo Print and return R installation and other
information for SSH workers.
grepLogs Grep log files for a pattern.
installPackagesOnSSHWorkers
Install packages on SSH workers.
killJobs Kill some jobs on the batch system.
loadConfig Load a specific configuration file.
loadExports Load exported R data objects.
loadRegistry Load a previously saved registry.
loadResult Loads a specific result file.
loadResults Loads result files for id vector.
makeClusterFunctions Create a ClusterFuntions object.
makeClusterFunctionsInteractive
Create cluster functions for sequential
execution in same session.
makeClusterFunctionsLSF
Create cluster functions for LSF systems.
makeClusterFunctionsLocal
Create cluster functions for sequential
execution on local host.
makeClusterFunctionsMulticore
Use multiple cores on local Linux machine to
spawn parallel jobs.
makeClusterFunctionsSGE
Create cluster functions for Sun Grid Engine
systems.
makeClusterFunctionsSLURM
Create cluster functions for SLURM-based
systems.
makeClusterFunctionsSSH
Create an SSH cluster to execute jobs.
makeClusterFunctionsTorque
Create cluster functions for torque-based
systems.
makeJob Creates a job description.
makeRegistry Construct a registry object.
makeSSHWorker Create SSH worker for SSH cluster functions.
makeSubmitJobResult Create a SubmitJobResult object.
reduceResults Reduce results from result directory.
removeRegistry Remove a registry object.
removeRegistryPackages
Remove packages from registry.
removeRegistrySourceDirs
Remove packages from registry.
removeRegistrySourceFiles
Remove source files from registry.
resetJobs Reset computational state of jobs.
sanitizePath Sanitize a path
setConfig Set and overwrite configuration settings
setJobFunction Sets the job function for already existing
jobs.
setJobNames Set job names.
showClusterStatus Show information about available computational
resources on cluster.
showLog Display the contents of a log file.
showStatus Retrieve or show status information about jobs.
sourceRegistryFiles Source registry files
submitJobs Submit jobs or chunks of jobs to batch system
via cluster function.
sweepRegistry Sweep obsolete files from the file system.
testJob Tests a job by running it with Rscript in a new
process.
waitForJobs Wait for termination of jobs on the batch
system.
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