/usr/lib/R/site-library/msm/INDEX is in r-cran-msm 1.6.4-1.
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aneur Aortic aneurysm progression data
boot.msm Bootstrap resampling for multi-state models
bos Bronchiolitis obliterans syndrome after lung
transplants
cav Heart transplant monitoring data
cmodel.object Developer documentation: censoring model object
coef.msm Extract model coefficients
crudeinits.msm Calculate crude initial values for transition
intensities
d2phase Coxian phase-type distribution with two phases
deltamethod The delta method
draic.msm Criteria for comparing two multi-state models
with nested state spaces
ecmodel.object Developer documentation: model for covariates
on misclassification probabilities
efpt.msm Expected first passage time
ematrix.msm Misclassification probability matrix
emodel.object Developer documentation: misclassification
model structure object
fev FEV1 measurements from lung transplant
recipients
hazard.msm Calculate tables of hazard ratios for
covariates on transition intensities
hmm-dists Hidden Markov model constructors
hmmMV Multivariate hidden Markov models
hmodel.object Developer documentation: hidden Markov model
structure object
logLik.msm Extract model log-likelihood
lrtest.msm Likelihood ratio test
medists Measurement error distributions
model.frame.msm Extract original data from 'msm' objects.
msm Multi-state Markov and hidden Markov models in
continuous time
msm.form.qoutput Extract msm model parameter estimates in
compact format
msm.object Fitted msm model objects
msm2Surv Convert data for 'msm' to data for 'survival',
'mstate' or 'flexsurv' analysis
odds.msm Calculate tables of odds ratios for covariates
on misclassification probabilities
paramdata.object Developer documentation: internal msm
parameters object
pearson.msm Pearson-type goodness-of-fit test
pexp Exponential distribution with
piecewise-constant rate
phasemeans.msm Parameters of phase-type models in mixture form
plot.msm Plots of multi-state models
plot.prevalence.msm Plot of observed and expected prevalences
plot.survfit.msm Plot empirical and fitted survival curves
plotprog.msm Kaplan Meier estimates of incidence
pmatrix.msm Transition probability matrix
pmatrix.piecewise.msm Transition probability matrix for processes
with piecewise-constant intensities
pnext.msm Probability of each state being next
ppass.msm Passage probabilities
prevalence.msm Tables of observed and expected prevalences
print.msm Print a fitted msm model object
printold.msm Print a fitted msm model object
psor Psoriatic arthritis data
qcmodel.object Developer documentation: model for covariates
on transition intensities
qgeneric Generic function to find quantiles of a
distribution
qmatrix.msm Transition intensity matrix
qmodel.object Developer documentation: transition model
structure object
qratio.msm Estimated ratio of transition intensities
recreate.olddata Convert data stored in msm object to old format
scoreresid.msm Score residuals
sim.msm Simulate one individual trajectory from a
continuous-time Markov model
simfitted.msm Simulate from a Markov model fitted using msm
simmulti.msm Simulate multiple trajectories from a
multi-state Markov model with arbitrary
observation times
sojourn.msm Mean sojourn times from a multi-state model
statetable.msm Table of transitions
summary.msm Summarise a fitted multi-state model
surface.msm Explore the likelihood surface
tnorm Truncated Normal distribution
totlos.msm Total length of stay, or expected number of
visits
transient.msm Transient and absorbing states
viterbi.msm Calculate the probabilities of underlying
states and the most likely path through them
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