/usr/lib/R/site-library/phylobase/nexusfiles/testSubsetTaxa.nex is in r-cran-phylobase 0.8.2-1.
This file is owned by root:root, with mode 0o644.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 | #NEXUS
BEGIN TAXA;
DIMENSIONS NTAX=6;
TAXLABELS
cnidaria
porifera
ctenophora
protostomia
deuterostomia
xeno
;
END;
BEGIN TREES;
TRANSLATE
1 deuterostomia,
2 protostomia,
3 porifera,
4 ctenophora,
5 cnidaria,
6 xeno;
TREE hyp1 = (3,((4,5),(1,2)));
TREE hyp2 = (3,(4,(6,(1,2))));
TREE hyp3 = (1,(2,(3,(4,(5,6)))));
END;
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