/usr/lib/R/site-library/phylobase/nexusfiles/treeWithSpecialCharacters.nex is in r-cran-phylobase 0.8.2-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 | #NEXUS
BEGIN TAXA;
DIMENSIONS NTAX=6;
TAXLABELS
Species_1 'Species 2' 'Species 3' 'Species/4' 'Species\5' 'Species"6'
;
END;
BEGIN CHARACTERS;
TITLE TestCharacters;
DIMENSIONS NCHAR=2;
FORMAT DATATYPE = STANDARD GAP = - MISSING = ? SYMBOLS = " 0 1";
CHARSTATELABELS
1 character1 / state1.1 'state 1.2', 2 character2 / state2.1 'state 2 2';
MATRIX
Species_1 01
'Species 2' 10
'Species 3' 11
'Species/4' 00
'Species\5' 01
'Species"6' ?1
;
END;
BEGIN TREES;
TRANSLATE
1 Species_1,
2 'Species 2',
3 'Species 3',
4 'Species/4',
5 'Species\5',
6 'Species"6';
TREE tree1 = ((((1,2),3),4),5);
END;
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