/usr/share/applications/spatialite-gui.desktop is in spatialite-gui 2.0.0~devel2-4+b1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 | [Desktop Entry]
Name=Spatialite GUI
GenericName=GUI for Spatialite databases
Comment=Manage Spatialite databases
Exec=spatialite-gui %f
Icon=spatialite-gui
Terminal=false
Type=Application
Categories=Education;Geography;Science;
Keywords=spatial;sqlite;gis;
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