This file is indexed.

/usr/share/avogadro/builder/amino/d-pro.zmat is in avogadro-data 1.0.3-5.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

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N    0.000000    0.000000    0.000000     0   0   0   -0.229034  N 
C    1.494797    0.000000    0.000000     1   0   0    0.090941  CA
C    1.527809  105.550429    0.000000     2   1   0    0.217989  C 
O    1.207319  127.831292  264.854954     3   2   1   -0.287199  O 
H    1.119708  111.126227  244.754163     2   1   3    0.055965  HA 
C    1.497645  106.511727  256.960226     1   2   3    0.014812  CD
H    1.113450  107.121032   93.975355     6   1   2    0.044093  HD1
H    1.104278  111.245361  211.055142     6   1   2    0.044093  HD2
C    1.543045  107.518454  335.187732     6   1   2   -0.036968  CG
H    1.102488  111.433649  260.424990     9   6   1    0.027862  HG1
H    1.102840  111.028639  141.942923     9   6   1    0.027862  HG2
C    1.540104  105.648687   21.155259     9   6   1   -0.027502  CB
H    1.101715  111.422528  229.882964    12   9   6    0.028543  HB1
H    1.106552  110.684738  111.424582    12   9   6    0.028543  HB2