/usr/share/avogadro/builder/amino/l-gln.zmat is in avogadro-data 1.0.3-5.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 | N 0.000000 0.000000 0.000000 0 0 0 -0.245274 N
C 1.457670 0.000000 0.000000 1 0 0 0.088098 CA
C 1.537462 106.520523 0.000000 2 1 0 0.217725 C
O 1.229094 123.385492 329.429064 3 2 1 -0.287208 O
C 1.532586 110.370317 238.618889 2 1 3 -0.020719 CB
C 1.528236 113.322049 191.149786 5 2 1 0.025606 CG
C 1.513998 111.806988 175.855036 6 5 2 0.210543 CD
O 1.223767 124.912998 4.059618 7 6 5 -0.276033 OE1
N 1.364012 114.170062 183.178010 7 6 5 -0.329321 NE2
H 1.096058 108.322216 117.425715 2 1 3 0.055702 HA
H 1.016140 117.458055 31.980577 1 2 3 0.141360 H
H 1.097737 109.970643 68.242022 5 2 1 0.028949 HB1
H 1.098705 109.210378 312.408537 5 2 1 0.028949 HB2
H 1.095605 110.047342 55.385464 6 5 2 0.035882 HG1
H 1.095264 110.551172 295.523693 6 5 2 0.035882 HG2
H 1.012118 117.469292 179.574619 9 7 6 0.144929 HE21
H 1.009465 123.611549 2.350899 9 7 6 0.144929 HE22
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