/usr/share/avogadro/builder/amino/l-leu.zmat is in avogadro-data 1.0.3-5.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 | N 0.000000 0.000000 0.000000 0 0 0 -0.245277 N
C 1.463223 0.000000 0.000000 1 0 0 0.087893 CA
C 1.533994 105.069435 0.000000 2 1 0 0.217722 C
O 1.229683 123.171604 316.881425 3 2 1 -0.287208 O
H 1.094618 107.524866 117.345376 2 1 3 0.055699 HA
H 1.015723 117.379025 31.320512 1 2 3 0.141360 H
C 1.536897 109.777708 238.598327 2 1 3 -0.026622 CB
H 1.099407 107.701406 311.920537 7 2 1 0.028744 HB1
H 1.098605 109.572821 65.745140 7 2 1 0.028744 HB2
C 1.542911 118.238441 191.352185 7 2 1 -0.044859 CG
H 1.099133 105.846496 164.004983 10 7 2 0.029608 HG
C 1.527260 113.340440 47.202608 10 7 2 -0.062604 CD1
H 1.095473 110.455676 169.765751 12 10 7 0.023234 HD11
H 1.094953 110.888241 50.456250 12 10 7 0.023234 HD12
H 1.094211 111.889593 289.337003 12 10 7 0.023234 HD13
C 1.527721 113.270466 279.700122 10 7 2 -0.062604 CD2
H 1.095843 110.200508 191.440690 16 10 7 0.023234 HD21
H 1.091303 112.419890 72.039879 16 10 7 0.023234 HD22
H 1.094863 111.028531 310.429783 16 10 7 0.023234 HD23
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