This file is indexed.

/usr/share/avogadro/builder/amino/l-thr.zmat is in avogadro-data 1.0.3-5.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

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N    0.000000    0.000000    0.000000     0   0   0   -0.242718  N 
C    1.465626    0.000000    0.000000     1   0   0    0.113126  CA
C    1.536574  105.991501    0.000000     2   1   0    0.220298  C 
O    1.230023  122.996034  333.730560     3   2   1   -0.287112  O 
C    2.562283  144.461782  226.751209     2   1   3   -0.037002  CG2
C    1.525379   33.835750   19.971688     5   2   1    0.076258  CB
O    1.435346  106.146797  236.310829     6   5   2   -0.390029  OG1
H    1.095886  143.942191   10.368047     5   2   1    0.025505  HG21
H    1.095697   90.324881  250.957428     5   2   1    0.025505  HG22
H    1.092438   95.799577  142.002886     5   2   1    0.025505  HG23
H    1.096269  108.811300  122.211852     6   5   2    0.061081  HB 
H    1.096724  107.138871  116.966001     2   1   3    0.058278  HA 
H    0.980479  108.541932   99.771737     7   6   5    0.209848  HG1
H    1.016673  117.297288   24.509154     1   2   3    0.141456  H