/usr/share/EMBOSS/test/genbank/gbvrl1.seq is in emboss-test 6.4.0-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 | LOCUS HH7TETRA 1272 bp DNA linear VRL 11-APR-1996
DEFINITION Human herpesvirus 7 (clone ED132'1.2) telomeric repeat region.
ACCESSION L46634 L46689
VERSION L46634.1 GI:1019148
KEYWORDS telomeric repeat.
SOURCE Human herpesvirus 7 (HHV-7)
ORGANISM Human herpesvirus 7
Viruses; dsDNA viruses, no RNA stage; Herpesvirales; Herpesviridae;
Betaherpesvirinae; Roseolovirus.
REFERENCE 1 (bases 1 to 1272)
AUTHORS Secchiero,P., Nicholas,J., Deng,H., Xiaopeng,T., van Loon,N.,
Ruvolo,V.R., Berneman,Z.N., Reitz,M.S. Jr. and Dewhurst,S.
TITLE Identification of human telomeric repeat motifs at the genome
termini of human herpesvirus 7: structural analysis and
heterogeneity
JOURNAL J. Virol. 69 (12), 8041-8045 (1995)
PUBMED 7494318
FEATURES Location/Qualifiers
source 1. .1272
/organism="Human herpesvirus 7"
/mol_type="genomic DNA"
/strain="JI"
/db_xref="taxon:10372"
/clone="ED132'1.2"
repeat_region 207. .928
/note="long and complex repeat region composed of various
direct repeats, including TAACCC (TRS), degenerate copies
of TRS motifs and a 14-bp repeat, TAGGGCTGCGGCCC"
misc_signal 938. .998
/note="pac2 motif"
misc_feature 1009
/note="right genome terminus (. . .ACA)"
ORIGIN
1 AAGCTTAAAC TGAGGTCACA CACGACTTTA ATTACGGCAA CGCAACAGCT GTAAGCTGCA
61 GGAAAGATAC GATCGTAAGC AAATGTAGTC CTACAATCAA GCGAGGTTGT AGACGTTACC
121 TACAATGAAC TACACCTCTA AGCATAACCT GTCGGGCACA GTGAGACACG CAGCCGTAAA
181 TTCAAAACTC AACCCAAACC GAAGTCTAAG TCTCACCCTA ATCGTAACAG TAACCCTACA
241 ACTCTAATCC TAGTCCGTAA CCGTAACCCC AATCCTAGCC CTTAGCCCTA ACCCTAGCCC
301 TAACCCTAGC TCTAACCTTA GCTCTAACTC TGACCCTAGG CCTAACCCTA AGCCTAACCC
361 TAACCGTAGC TCTAAGTTTA ACCCTAACCC TAACCCTAAC CATGACCCTG ACCCTAACCC
421 TAGGGCTGCG GCCCTAACCC TAGCCCTAAC CCTAACCCTA ATCCTAATCC TAGCCCTAAC
481 CCTAGGGCTG CGGCCCTAAC CCTAGCCCTA ACCCTAACCC TAACCCTAGG GCTGCGGCCC
541 TAACCCTAAC CCTAGGGCTG CGGCCCGAAC CCTAACCCTA ACCCTAACCC TAACCCTAGG
601 GCTGCGGCCC TAACCCTAAC CCTAGGGCTG CGGCCCTAAC CCTAACCCTA GGGCTGCGGC
661 CCGAACCCTA ACCCTAACCC TAACCCTAGG GCTGCGGCCC TAACCCTAAC CCTAGGGCTG
721 CGGCCCTAAC CCTAACCCTA ACTCTAGGGC TGCGGCCCTA ACCCTAACCC TAACCCTAAC
781 CCTAGGGCTG CGGCCCGAAC CCTAGCCCTA ACCCTAACCC TGACCCTGAC CCTAACCCTA
841 ACCCTAACCC TAACCCTAAC CCTAACCCTA ACCCTAACCC TAACCCTAAC CCTAACCCTA
901 ACCCTAACCC TAACCCTAAC CCTAACCCCG CCCCCACTGG CAGCCAATGT CTTGTAATGC
961 CTTCAAGGCA CTTTTTCTGC GAGCCGCGCG CAGCACTCAG TGAAAAACAA GTTTGTGCAC
1021 GAGAAAGACG CTGCCAAACC GCAGCTGCAG CATGAAGGCT GAGTGCACAA TTTTGGCTTT
1081 AGTCCCATAA AGGCGCGGCT TCCCGTAGAG TAGAAAACCG CAGCGCGGCG CACAGAGCGA
1141 AGGCAGCGGC TTTCAGACTG TTTGCCAAGC GCAGTCTGCA TCTTACCAAT GATGATCGCA
1201 AGCAAGAAAA ATGTTCTTTC TTAGCATATG CGTGGTTAAT CCTGTTGTGG TCATCACTAA
1261 GTTTTCAAGC TT
//
|