/usr/share/perl5/SWISS/OHs.pm is in libswiss-perl 1.67-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 | package SWISS::OHs;
use vars qw($AUTOLOAD @ISA @EXPORT_OK %fields);
use Exporter;
use Carp;
use strict;
use SWISS::ListBase;
use SWISS::TextFunc;
use SWISS::OH;
BEGIN {
@EXPORT_OK = qw();
@ISA = ( 'Exporter', 'SWISS::ListBase');
%fields = (
);
}
sub new {
my $ref = shift;
my $class = ref($ref) || $ref;
my $self = new SWISS::ListBase;
$self->rebless($class);
return $self;
}
sub fromText {
my $self = new(shift);
my $textRef = shift;
my $line;
my @resources;
if ($$textRef =~ /($SWISS::TextFunc::linePattern{OH})/m) {
foreach $line (split /\n/m, $1) {
$self->{indentation} += $line =~ s/^ //;
$line = SWISS::TextFunc->cleanLine($line);
push @{$self->list()}, SWISS::OH->fromText($line);
}
}
$self->{_dirty} = 0;
return $self;
}
sub toText {
my $self = shift;
my $textRef = shift;
my $newText = '';
for (@{$self->list()}) {
$newText .= 'OH ' . $_->toText . "\n";
}
$self->{_dirty} = 0;
return SWISS::TextFunc->insertLineGroup($textRef, $newText,
$SWISS::TextFunc::linePattern{OH});
}
# OXs must never be sorted, overwrite the inherited sort method.
sub sort {
return 1;
}
1;
__END__
=head1 Name
SWISS::OHs
=head1 Description
B<SWISS::OHs> represents the OH lines within an SWISS-PROT + TrEMBL
entry as specified in the user manual
http://www.expasy.org/sprot/userman.html . The OHs object is a container
object which holds a list of SWISS::OH objects.
=head1 Inherits from
SWISS::BaseClass.pm
=head1 Methods
=head2 Standard methods
=over
=item new
=item fromText
=item toText
=back
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