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/usr/share/ncbi/data/KSmtidk.mat is in ncbi-data 6.1.20120620-2.

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The actual contents of the file can be viewed below.

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;New MTIDK
A    1.283   1.364   1.077   2.219   0.490   1.265   0.903
C    0.918   0.002   0.385   0.440   0.138   0.432   0.079
D    0.068   2.103   1.646   0.182   0.664   1.581   1.401
E    0.281   3.351   2.998   0.789   4.868   2.735   3.812
F    0.490   0.075   0.391   0.639   0.125   0.081   0.038
G    0.084   0.215   0.432   0.111   0.153   0.367   0.125
H    0.590   0.646   0.584   0.842   0.307   0.611   0.396
I    2.408   0.261   0.345   0.931   0.402   0.440   0.289
K    1.233   2.194   1.817   0.611   2.095   1.686   2.027
L    2.998   0.269   0.367   3.852   0.510   0.514   0.562
M    2.161   0.605   0.442   1.441   0.607   0.457   0.570
N    1.231   1.683   2.157   0.197   1.653   2.430   2.065
P    0.004   0.108   0.018   0.006   0.010   0.004   0.007
Q    0.311   2.290   2.330   0.811   2.596   2.155   2.585
R    1.014   1.476   1.771   0.114   1.667   2.006   1.844
S    0.332   0.753   0.930   0.424   0.734   0.801   0.518
T    0.197   0.543   0.647   0.680   0.905   0.643   0.808
V    1.525   0.479   0.350   0.887   0.286   0.350   0.362
W    0.066   0.064   0.065   0.747   0.006   0.115   0.014
Y    1.319   0.064   0.081   1.526   0.204   0.118   0.096