/usr/include/Bpp/Seq/Io.all is in libbpp-seq-dev 2.0.3-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 | #include "Io/AbstractISequence.h"
#include "Io/AbstractISequence2.h"
#include "Io/AbstractOSequence.h"
#include "Io/Clustal.h"
#include "Io/Dcse.h"
#include "Io/Fasta.h"
#include "Io/Fastq.h"
#include "Io/GenBank.h"
#include "Io/ISequence.h"
#include "Io/ISequenceStream.h"
#include "Io/IoSequence.h"
#include "Io/IoSequenceFactory.h"
#include "Io/IoSequenceStream.h"
#include "Io/MafAlignmentParser.h"
#include "Io/MafIterator.h"
#include "Io/Mase.h"
#include "Io/MaseTools.h"
#include "Io/NexusIoSequence.h"
#include "Io/NexusTools.h"
#include "Io/OSequence.h"
#include "Io/OSequenceStream.h"
#include "Io/PhredPhd.h"
#include "Io/PhredPoly.h"
#include "Io/Phylip.h"
#include "Io/SequenceFileIndex.h"
#include "Io/Stockholm.h"
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