This file is indexed.

/usr/lib/python3/dist-packages/germinate/seeds.py is in python3-germinate 2.28.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
# -*- coding: utf-8 -*-
"""Fetch seeds from a URL collection or from a VCS."""

# Copyright (c) 2004, 2005, 2006, 2008, 2009, 2011, 2012 Canonical Ltd.
#
# Germinate is free software; you can redistribute it and/or modify it
# under the terms of the GNU General Public License as published by the
# Free Software Foundation; either version 2, or (at your option) any
# later version.
#
# Germinate is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
# General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with Germinate; see the file COPYING.  If not, write to the Free
# Software Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA
# 02110-1301, USA.

from __future__ import print_function

import atexit
import codecs
import collections
import io
import logging
import os
import re
import shutil
import subprocess
import sys
import tempfile
try:
    from urllib.parse import urljoin, urlparse as _urlparse
    from urllib.request import Request, URLError, urlopen
except ImportError:
    from urlparse import urljoin, urlparse as _urlparse
    from urllib2 import Request, URLError, urlopen

import germinate.defaults
from germinate.tsort import topo_sort


# pychecker gets confused by __next__ for Python 3 support.
__pychecker__ = 'no-special'


__all__ = [
    'Seed',
    'SeedError',
    'SeedStructure',
    'SeedVcs',
]


_logger = logging.getLogger(__name__)


_vcs_cache_dir = None


if sys.version >= '3':
    _string_types = str
    _text_type = str
else:
    _string_types = basestring
    _text_type = unicode


class AtomicFile(object):
    """Facilitate atomic writing of files.  Forces UTF-8 encoding."""

    def __init__(self, filename):
        self.filename = filename
        if sys.version_info[0] < 3:
            self.fd = codecs.open(
                '%s.new' % self.filename, 'w', 'UTF-8', 'replace')
        else:
            # io.open is available from Python 2.6, but we only use it with
            # Python 3 because it raises exceptions when passed bytes.
            self.fd = io.open(
                '%s.new' % self.filename, mode='w',
                encoding='UTF-8', errors='replace')

    def __enter__(self):
        return self.fd

    def __exit__(self, exc_type, unused_exc_value, unused_exc_tb):
        self.fd.close()
        if exc_type is None:
            os.rename('%s.new' % self.filename, self.filename)

    # Not really necessary, but reduces pychecker confusion.
    def write(self, s):
        self.fd.write(s)


class SeedError(RuntimeError):
    """An error opening or parsing a seed."""

    pass


def _ensure_unicode(s):
    if isinstance(s, _text_type):
        return s
    else:
        return _text_type(s, "utf8", "replace")


class SeedVcs(object):
    """Version control system to use for seeds."""

    # Detect from URL.
    AUTO = 1

    # Use Bazaar.
    BZR = 2

    # Use Git.
    GIT = 3


class Seed(object):
    """A single seed from a collection."""

    def _open_seed_bzr(self, base, branch, name):
        global _vcs_cache_dir
        if _vcs_cache_dir is None:
            _vcs_cache_dir = tempfile.mkdtemp(prefix='germinate-')
            atexit.register(
                shutil.rmtree, _vcs_cache_dir, ignore_errors=True)
        checkout = os.path.join(_vcs_cache_dir, branch)
        if not os.path.isdir(checkout):
            path = os.path.join(base, branch)
            if not path.endswith('/'):
                path += '/'
            command = ['bzr']
            # https://bugs.launchpad.net/bzr/+bug/39542
            if path.startswith('http:'):
                command.append('branch')
                _logger.info("Fetching branch of %s", path)
            else:
                command.extend(['checkout', '--lightweight'])
                _logger.info("Checking out %s", path)
            command.extend([path, checkout])
            status = subprocess.call(command)
            if status != 0:
                raise SeedError("Command failed with exit status %d:\n"
                                "  '%s'" % (status, ' '.join(command)))
        return open(os.path.join(checkout, name))

    def _open_seed_git(self, base, branch, name):
        global _vcs_cache_dir
        if _vcs_cache_dir is None:
            _vcs_cache_dir = tempfile.mkdtemp(prefix='germinate-')
            atexit.register(
                shutil.rmtree, _vcs_cache_dir, ignore_errors=True)
        checkout = os.path.join(_vcs_cache_dir, branch)
        if not os.path.isdir(checkout):
            # This is a very strange way to specify a git branch, but it's
            # hard to do better here without breaking backward-compatibility
            # in at least some of Germinate's own command-line arguments,
            # the public Python API, or "include" lines in seed STRUCTURE
            # files.
            if '.' in branch:
                repository, git_branch = branch.rsplit('.', 1)
            else:
                repository = branch
                git_branch = None
            path = os.path.join(base, repository)
            if not path.endswith('/'):
                path += '/'
            command = ['git', 'clone']
            if git_branch is not None:
                command.extend(['-b', git_branch])
                _logger.info("Cloning branch %s of %s", git_branch, path)
            else:
                _logger.info("Cloning %s", path)
            command.extend([path, checkout])
            status = subprocess.call(command)
            if status != 0:
                raise SeedError("Command failed with exit status %d:\n"
                                "  '%s'" % (status, ' '.join(command)))
        return open(os.path.join(checkout, name))

    def _open_seed_url(self, base, branch, name):
        path = os.path.join(base, branch)
        if not path.endswith('/'):
            path += '/'
        url = urljoin(path, name)
        if not _urlparse(url).scheme:
            fullpath = os.path.join(path, name)
            _logger.info("Using %s", fullpath)
            return open(fullpath)
        _logger.info("Downloading %s", url)
        req = Request(url)
        req.add_header('Cache-Control', 'no-cache')
        req.add_header('Pragma', 'no-cache')
        return urlopen(req)

    def _open_seed(self, base, branch, name, vcs=None):
        if vcs is not None:
            if vcs == SeedVcs.AUTO:
                # Slightly dodgy auto-sensing, but if we can't tell then
                # we'll try both.
                if base.startswith('git'):
                    vcs = SeedVcs.GIT
                elif base.startswith('bzr'):
                    vcs = SeedVcs.BZR
            if vcs == SeedVcs.AUTO:
                try:
                    return self._open_seed_git(base, branch, name)
                except SeedError:
                    return self._open_seed_bzr(base, branch, name)
            elif vcs == SeedVcs.GIT:
                return self._open_seed_git(base, branch, name)
            else:
                return self._open_seed_bzr(base, branch, name)
        else:
            return self._open_seed_url(base, branch, name)

    def __init__(self, bases, branches, name, vcs=None):
        """Read a seed from a collection."""
        if isinstance(branches, _string_types):
            branches = [branches]

        self._name = name
        self._base = None
        self._branch = None
        self._file = None

        fd = None
        ssh_host = None
        for base in bases:
            for branch in branches:
                try:
                    fd = self._open_seed(base, branch, name, vcs=vcs)
                    self._base = base
                    self._branch = branch
                    break
                except SeedError:
                    ssh_match = re.match(
                        r'(?:bzr|git)\+ssh://(?:[^/]*?@)?(.*?)(?:/|$)', base)
                    if ssh_match:
                        ssh_host = ssh_match.group(1)
                except (OSError, IOError, URLError):
                    pass
            if fd is not None:
                break

        if fd is None:
            if vcs is not None:
                _logger.warning("Could not open %s from checkout of (any of):",
                                name)
                for base in bases:
                    for branch in branches:
                        _logger.warning('  %s' % os.path.join(base, branch))

                if ssh_host is not None:
                    _logger.error("Do you need to set your user name on %s?",
                                  ssh_host)
                    _logger.error("Try a section such as this in "
                                  "~/.ssh/config:")
                    _logger.error("")
                    _logger.error("Host %s", ssh_host)
                    _logger.error("        User YOUR_USER_NAME")
            else:
                _logger.warning("Could not open (any of):")
                for base in bases:
                    for branch in branches:
                        path = os.path.join(base, branch)
                        if not path.endswith('/'):
                            path += '/'
                        _logger.warning('  %s' % urljoin(path, name))
            raise SeedError("Could not open %s" % name)

        try:
            self._text = fd.read()
            # In Python 3, we need to decode seed text read from URLs.
            if sys.version_info[0] >= 3 and isinstance(self._text, bytes):
                self._text = self._text.decode(errors="replace")
        finally:
            fd.close()

    def open(self):
        """Open a file object with the text of this seed."""
        if sys.version_info[0] < 3:
            self._file = io.BytesIO(self._text)
        else:
            self._file = io.StringIO(self._text)
        return self._file

    def read(self, *args, **kwargs):
        """Read text from this seed."""
        return self._file.read(*args, **kwargs)

    def readline(self, *args, **kwargs):
        """Read a line from this seed."""
        return self._file.readline(*args, **kwargs)

    def readlines(self, *args, **kwargs):
        """Read a list of lines from this seed."""
        return self._file.readlines(*args, **kwargs)

    def __next__(self):
        """Read the next line from this seed."""
        return next(self._file)

    if sys.version < '3':
        next = __next__

    def close(self):
        """Close the file object for this seed."""
        self._file.close()

    def __enter__(self):
        """Open a seed context, returning a file object."""
        return self.open()

    def __exit__(self, unused_exc_type, unused_exc_value, unused_exc_tb):
        """Close a seed context."""
        self.close()

    @property
    def name(self):
        """The seed's name."""
        return self._name

    @property
    def base(self):
        """The base URL where this seed was found."""
        return self._base

    @property
    def branch(self):
        """The name of the branch containing this seed."""
        return self._branch

    @property
    def text(self):
        """The text of this seed."""
        return self._text

    def __lt__(self, other):
        if not isinstance(other, Seed):
            return NotImplemented
        return self.text < other.text

    def __le__(self, other):
        if not isinstance(other, Seed):
            return NotImplemented
        return self.text <= other.text

    def __eq__(self, other):
        if not isinstance(other, Seed):
            return NotImplemented
        return self.text == other.text

    def __ne__(self, other):
        if not isinstance(other, Seed):
            return NotImplemented
        return self.text != other.text

    def __ge__(self, other):
        if not isinstance(other, Seed):
            return NotImplemented
        return self.text >= other.text

    def __gt__(self, other):
        if not isinstance(other, Seed):
            return NotImplemented
        return self.text > other.text

    __hash__ = None


class CustomSeed(Seed):
    """A seed created from custom input data."""

    def __init__(self, name, entries):
        self._name = name
        self._base = None
        self._branch = None
        self._text = '\n'.join(entries) + '\n'


class SingleSeedStructure(object):
    """A single seed collection structure file.

    The input data is an ordered sequence of lines as follows:

    SEED:[ INHERITED]

    INHERITED is a space-separated list of seeds from which SEED inherits.
    For example, "ship: base desktop" indicates that packages in the "ship"
    seed may depend on packages in the "base" or "desktop" seeds without
    requiring those packages to appear in the "ship" output.  INHERITED may
    be empty.

    The lines should be topologically sorted with respect to inheritance,
    with inherited-from seeds at the start.

    Any line as follows:

    include BRANCH

    causes another seed branch to be included.  Seed names will be resolved
    in included branches if they cannot be found in the current branch.

    This is for internal use; applications should use the SeedStructure
    class instead.

    """

    def __init__(self, branch, f):
        """Parse a single seed structure file."""
        self.seed_order = []
        self.inherit = {}
        self.branches = [branch]
        self.lines = []
        self.features = set()

        for line in f:
            line = line.strip()
            if not line:
                continue
            if line.startswith('#'):
                continue
            words = line.split()
            if words[0].endswith(':'):
                seed = words[0][:-1]
                if '/' in seed:
                    raise SeedError(
                        "seed name '%s' may not contain '/'" % seed)
                self.seed_order.append(seed)
                self.inherit[seed] = list(words[1:])
                self.lines.append(line)
            elif words[0] == 'include':
                self.branches.extend(words[1:])
            elif words[0] == 'feature':
                self.features.update(words[1:])
            else:
                _logger.error("Unparseable seed structure entry: %s", line)


class SeedStructure(collections.Mapping, object):
    """The full structure of a seed collection.

    This deals with acquiring the seed structure files and recursively
    acquiring any seed structure files it includes.

    """

    def __init__(self, branch, seed_bases=None, vcs=None):
        """Open a seed collection and read all the seeds it contains."""
        if seed_bases is None:
            if vcs is None:
                seed_bases = germinate.defaults.seeds
            elif vcs == SeedVcs.GIT:
                seed_bases = germinate.defaults.seeds_git
            else:
                seed_bases = germinate.defaults.seeds_bzr
            seed_bases = seed_bases.split(',')

        self._seed_bases = seed_bases
        self._branch = branch
        self._vcs = vcs
        self._features = set()
        self._seed_order, self._inherit, branches, self._lines = \
            self._parse(self._branch, set())
        self._seeds = {}
        for seed in self._seed_order:
            self._seeds[seed] = self.make_seed(
                seed_bases, branches, seed, vcs=vcs)
        self._expand_inheritance()

    def _parse(self, branch, got_branches):
        all_seed_order = []
        all_inherit = {}
        all_branches = []
        all_structure = []

        # Fetch this one
        with self.make_seed(
                self._seed_bases, branch, "STRUCTURE", self._vcs) as seed:
            structure = SingleSeedStructure(branch, seed)
        got_branches.add(branch)

        # Recursively expand included branches
        for child_branch in structure.branches:
            if child_branch in got_branches:
                continue
            (child_seed_order, child_inherit, child_branches,
             child_structure) = self._parse(child_branch, got_branches)
            all_seed_order.extend(child_seed_order)
            all_inherit.update(child_inherit)
            for grandchild_branch in child_branches:
                if grandchild_branch not in all_branches:
                    all_branches.append(grandchild_branch)
            for child_structure_line in child_structure:
                child_structure_name = child_structure_line.split()[0][:-1]
                for i in range(len(all_structure)):
                    if (all_structure[i].split()[0][:-1] ==
                        child_structure_name):
                        del all_structure[i]
                        break
                all_structure.append(child_structure_line)

        # Attach the main branch's data to the end
        all_seed_order.extend(structure.seed_order)
        all_inherit.update(structure.inherit)
        for child_branch in structure.branches:
            if child_branch not in all_branches:
                all_branches.append(child_branch)
        for structure_line in structure.lines:
            structure_name = structure_line.split()[0][:-1]
            for i in range(len(all_structure)):
                if all_structure[i].split()[0][:-1] == structure_name:
                    del all_structure[i]
                    break
            all_structure.append(structure_line)
        self._features.update(structure.features)

        # We generally want to process branches in reverse order, so that
        # later branches can override seeds from earlier branches
        all_branches.reverse()

        return all_seed_order, all_inherit, all_branches, all_structure

    def make_seed(self, bases, branches, name, vcs=None):
        """Read a seed from this collection.

        This can be overridden by subclasses in order to read seeds in a
        different way.
        """
        return Seed(bases, branches, name, vcs=vcs)

    def _expand_inheritance(self):
        """Expand out incomplete inheritance lists."""
        self._original_inherit = dict(self._inherit)

        self._names = topo_sort(self._inherit)
        for name in self._names:
            seen = set()
            new_inherit = []
            for inheritee in self._inherit[name]:
                for expanded in self._inherit[inheritee]:
                    if expanded not in seen:
                        new_inherit.append(expanded)
                        seen.add(expanded)
                if inheritee not in seen:
                    new_inherit.append(inheritee)
                    seen.add(inheritee)
            self._inherit[name] = new_inherit

    def limit(self, seeds):
        """Restrict the seeds we care about to this list."""
        self._names = []
        for name in seeds:
            for inherit in self._inherit[name]:
                if inherit not in self._names:
                    self._names.append(inherit)
            if name not in self._names:
                self._names.append(name)

    def add(self, name, entries, parent=None):
        """Add a custom seed."""
        self._names.append(name)
        if parent is not None:
            self._inherit[name] = self._inherit[parent] + [parent]
        else:
            self._inherit[name] = [parent]
        self._seeds[name] = CustomSeed(name, entries)

    def inner_seeds(self, seedname):
        """Return this seed and the seeds from which it inherits."""
        innerseeds = list(self._inherit[seedname])
        innerseeds.append(seedname)
        return innerseeds

    def strictly_outer_seeds(self, seedname):
        """Return the seeds that inherit from this seed."""
        outerseeds = []
        for seed in self._names:
            if seedname in self._inherit[seed]:
                outerseeds.append(seed)
        return outerseeds

    def outer_seeds(self, seedname):
        """Return this seed and the seeds that inherit from it."""
        outerseeds = [seedname]
        outerseeds.extend(self.strictly_outer_seeds(seedname))
        return outerseeds

    def __iter__(self):
        """Return an iterator over the seeds in this collection."""
        return iter(self._seeds)

    def __len__(self):
        """Return the number of seeds in this collection."""
        return len(self._seeds)

    def __getitem__(self, seedname):
        """Get a particular seed from this collection."""
        return self._seeds[seedname]

    @property
    def branch(self):
        """The name of this seed collection branch."""
        return self._branch

    @property
    def features(self):
        """The feature flags set for this seed collection."""
        return set(self._features)

    @property
    def supported(self):
        """The name of the "supported" seed (the last one in the structure)."""
        return self._seed_order[-1]

    @property
    def names(self):
        """All the seed names in this collection."""
        return list(self._names)

    def write(self, filename):
        """Write the text of the seed STRUCTURE file."""
        with AtomicFile(filename) as f:
            for line in self._lines:
                print(_ensure_unicode(line), file=f)

    def write_dot(self, filename):
        """Write a dot file representing this structure."""
        with AtomicFile(filename) as dotfile:
            print("digraph structure {", file=dotfile)
            print("    node [color=lightblue2, style=filled];", file=dotfile)

            for seed in self._seed_order:
                if seed not in self._original_inherit:
                    continue
                for inherit in self._original_inherit[seed]:
                    print("    \"%s\" -> \"%s\";" % (inherit, seed),
                          file=dotfile)

            print("}", file=dotfile)

    def write_seed_text(self, filename, seedname):
        """Write the text of a seed in this collection."""
        with AtomicFile(filename) as f:
            with self._seeds[seedname] as seed:
                for line in seed:
                    print(_ensure_unicode(line.rstrip('\n')), file=f)