This file is indexed.

/usr/share/avogadro/builder/amino/d-arg.zmat is in avogadro-data 1.2.0-3.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

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N    0.000000    0.000000    0.000000     0   0   0   -0.245284  N 
C    1.481667    0.000000    0.000000     1   0   0    0.087761  CA
C    1.529928  105.545788    0.000000     2   1   0    0.217715  C 
O    1.205646  130.286658   57.614229     3   2   1   -0.287208  O 
C    1.542707  115.874819  120.040615     2   1   3   -0.026113  C 
C    1.531084  111.478210   73.171062     5   2   1   -0.020371  H 
C    1.537074  110.603980  179.765799     6   5   2    0.064706  H 
N    1.498889  108.685588  179.194061     7   6   5   -0.276142  C 
C    1.450128  114.105014  181.146931     8   7   6    0.376231  H 
N    1.431841  113.882234   63.954343     9   8   7   -0.289263  H 
N    1.298166  119.074381  244.360156     9   8   7   -0.129780  C 
H    1.015136  111.023959  173.889632     1   2   3    0.141360  H 
H    1.127731  108.119180  243.933087     2   1   3    0.055691  H 
H    1.109154  110.119211  310.040602     5   2   1    0.028593  N 
H    1.110256  109.607752  194.730396     5   2   1    0.028593  H 
H    1.109448  109.990568   57.845188     6   5   2    0.029620  C 
H    1.108283  110.834159  301.404336     6   5   2    0.029620  N 
H    1.112879  110.268363   59.950746     7   6   5    0.065470  H 
H    1.112989  110.538405  302.387050     7   6   5    0.065470  N 
H    1.035320  110.553001   56.439623     8   7   6    0.257858  H 
H    1.011937  115.589032  154.143651    10   9   8    0.254646  H 
H    1.013845  116.289587   20.925783    10   9   8    0.254646  H  
H    1.012953  120.630702  187.027441    11   9   8    0.306182  HA