This file is indexed.

/usr/share/avogadro/builder/amino/d-cys.zmat is in avogadro-data 1.2.0-3.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

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N    0.000000    0.000000    0.000000     0   0   0   -0.244472  N 
C    1.478143    0.000000    0.000000     1   0   0    0.096333  CA
C    1.538028  111.567327    0.000000     2   1   0    0.218528  C 
O    1.207082  128.901033   16.295499     3   2   1   -0.287179  O 
C    1.528540  109.771016  121.124767     2   1   3    0.014675  HA 
S    1.816614  108.899648   65.563556     5   2   1   -0.176229  CB
H    1.130324  108.998082  241.160784     2   1   3    0.056504  HB1
H    1.106801  112.244149  303.425876     5   2   1    0.039379  SG
H    1.110461  111.112665  183.695478     5   2   1    0.039379  HB2
H    1.354868   99.318624  312.988701     6   5   2    0.101693  HG 
H    1.020348  111.577655  307.781947     1   2   3    0.141390  H