This file is indexed.

/usr/share/avogadro/builder/amino/d-leu.zmat is in avogadro-data 1.2.0-3.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

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N    0.000000    0.000000    0.000000     0   0   0   -0.245277  N 
C    1.486992    0.000000    0.000000     1   0   0    0.087893  CA
C    1.539162  107.764424    0.000000     2   1   0    0.217722  C 
O    1.205895  125.278508  158.918115     3   2   1   -0.287208  O 
C    1.536111  114.940208  122.689502     2   1   3   -0.026622  HA 
H    1.113977  109.147732  197.924489     5   2   1    0.028744  H  
H    1.106875  110.274518  312.068484     5   2   1    0.028744  CB
C    1.542464  112.801929   75.861792     5   2   1   -0.044859  HB1
C    1.533459  109.777371  191.375398     8   5   2   -0.062604  HB2
H    1.096299  111.859345  300.121590     9   8   5    0.023234  CG
H    1.096034  111.173945  180.599806     9   8   5    0.023234  HG 
H    1.095075  111.849803   60.734059     9   8   5    0.023234  CD1
C    1.533079  111.048548   68.782148     8   5   2   -0.062604  HD11
H    1.128161  108.655622  245.395864     2   1   3    0.055699  HD12
H    1.017211  110.690265  156.416595     1   2   3    0.141360  HD13
H    1.118386  108.980633  309.517345     8   5   2    0.029608  CD2
H    1.095349  111.341696  179.800543    13   8   5    0.023234  HD21
H    1.096829  111.722399   60.231702    13   8   5    0.023234  HD22
H    1.095092  111.835033  300.051037    13   8   5    0.023234  HD23