This file is indexed.

/usr/share/avogadro/builder/amino/d-thr.zmat is in avogadro-data 1.2.0-3.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

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N    0.000000    0.000000    0.000000     0   0   0   -0.242718  N 
C    1.475189    0.000000    0.000000     1   0   0    0.113126  CA
C    1.527524  115.391522    0.000000     2   1   0    0.220298  C 
O    1.206152  129.362142  165.993159     3   2   1   -0.287112  O 
O    2.464145   77.827537  125.083660     2   1   3   -0.390029  CG2
C    1.421585   36.636855  182.563376     5   2   1    0.076258  CB
C    1.521791  110.943414  236.522592     6   5   2   -0.037002  OG1
H    0.986121   91.106714   56.687267     5   2   1    0.209848  HG21
H    1.118121  101.784228  117.865671     6   5   2    0.061081  HG22
H    1.095524  112.580962   65.925301     7   6   5    0.025505  HG23
H    1.099792  110.317304  306.659685     7   6   5    0.025505  HB 
H    1.098326  111.591456  187.792403     7   6   5    0.025505  HA 
H    1.130129  106.902531  242.730935     2   1   3    0.058278  HG1
H    1.020990  110.739340  287.621003     1   2   3    0.141456  H