This file is indexed.

/usr/share/avogadro/builder/amino/d-trp.zmat is in avogadro-data 1.2.0-3.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

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N    0.000000    0.000000    0.000000     0   0   0   -0.244957  N 
C    1.485937    0.000000    0.000000     1   0   0    0.091665  CA
C    1.537258  108.068082    0.000000     2   1   0    0.218042  C 
O    1.205881  125.382128  156.174550     3   2   1   -0.287197  O 
C    1.542561  114.895551  122.947312     2   1   3   -0.001660  CB
H    1.117305  109.088186  187.164563     5   2   1    0.033366  HB1
H    1.109777  110.530804  301.386796     5   2   1    0.033366  HB2
C    1.482336  111.237326   65.655663     5   2   1   -0.020419  CG
C    1.444655  125.743915   68.063797     8   5   2    0.002882  CD1
C    1.435425  106.997686  181.232356     9   8   5    0.046731  NE1
C    1.410996  122.038206  179.215877    10   9   8   -0.037791  HE1
H    1.084530  120.972857  180.507012    11  10   9    0.063821  CE2
C    1.382173  117.098808    0.734064    11  10   9   -0.059784  CD2
H    1.090348  119.916566  180.079608    13  11  10    0.061822  CE3
C    1.421268  121.637648    0.266002    13  11  10   -0.061066  HE3
H    1.088652  118.442053  179.003608    15  13  11    0.061778  CZ3
C    1.383002  121.422504  359.350101    15  13  11   -0.052326  HZ3
H    1.088116  121.369228  179.369861    17  15  13    0.062417  CH2
N    1.403447  107.662961  359.448807    10   9   8   -0.360366  HH2
C    1.388180  126.741668  248.597665     8   5   2    0.005969  CZ2
H    1.075398  129.198074  358.071150    20   8   5    0.080975  HZ2
H    1.000406  125.982118  182.192496    19  10   9    0.165343  HD1
H    1.019404  110.191755  157.186525     1   2   3    0.141371  H  
H    1.127608  108.385585  244.931869     2   1   3    0.056018  HA