This file is indexed.

/usr/share/avogadro/builder/amino/d-val.zmat is in avogadro-data 1.2.0-3.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

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N    0.000000    0.000000    0.000000     0   0   0   -0.245026  N 
C    1.482917    0.000000    0.000000     1   0   0    0.089955  CA
C    1.526578  105.880998    0.000000     2   1   0    0.217973  C 
O    1.205383  129.232375  242.836109     3   2   1   -0.287198  O 
H    1.126351  108.107859  245.468510     2   1   3    0.055950  CB
H    1.018711  110.943956  289.827928     1   2   3    0.141370  CG2
C    1.557080  115.533191  122.195735     2   1   3   -0.022712  CG1
H    1.120368  108.054900  301.105019     7   2   1    0.031517  HA 
C    1.530035  110.273465  182.599274     7   2   1   -0.060794  H  
H    1.096352  112.235005  300.139265     9   7   2    0.023293  HB 
H    1.097074  111.103343  180.248418     9   7   2    0.023293  HG21
H    1.096883  112.083396   61.007768     9   7   2    0.023293  HG22
C    1.530292  110.197606   59.956600     7   2   1   -0.060794  HG23
H    1.096269  111.998079   55.775763    13   7   2    0.023293  HG11
H    1.095195  112.255211  294.191637    13   7   2    0.023293  HG12
H    1.097399  110.870031  174.943719    13   7   2    0.023293  HG13