This file is indexed.

/usr/share/avogadro/builder/amino/l-cys.zmat is in avogadro-data 1.2.0-3.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

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N    0.000000    0.000000    0.000000     0   0   0   -0.244472  N 
C    1.465578    0.000000    0.000000     1   0   0    0.096333  CA
C    1.540418  105.891536    0.000000     2   1   0    0.218528  C 
O    1.230946  122.856752  349.177701     3   2   1   -0.287179  O 
H    1.097477  107.137842  116.232112     2   1   3    0.056504  HA 
C    1.534386  111.391877  238.241360     2   1   3    0.014675  CB
H    1.094231  110.767291  314.226133     6   2   1    0.039379  HB1
S    1.827297  113.514658  194.319804     6   2   1   -0.176229  SG
H    1.096542  110.667145   72.771773     6   2   1    0.039379  HB2
H    1.342296   96.303940  171.147318     8   6   2    0.101693  HG 
H    1.017627  116.966593    8.434510     1   2   3    0.141390  H